ENSG00000108883

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000402521 ENSG00000108883 HEK293_OSMI2_6hA HEK293_TMG_6hB EFTUD2 protein_coding protein_coding 144.1891 170.7626 117.9266 28.13179 4.803173 -0.5340653 12.046780 19.72056 3.772367 2.842170 0.8692781 -2.3830709 0.07980417 0.1177667 0.03200000 -0.08576667 1.490758e-03 2.399206e-49 FALSE TRUE
ENST00000588374 ENSG00000108883 HEK293_OSMI2_6hA HEK293_TMG_6hB EFTUD2 protein_coding nonsense_mediated_decay 144.1891 170.7626 117.9266 28.13179 4.803173 -0.5340653 2.477679 0.00000 8.364079 0.000000 0.4739314 9.7097868 0.02117083 0.0000000 0.07086667 0.07086667 2.399206e-49 2.399206e-49 FALSE FALSE
ENST00000591382 ENSG00000108883 HEK293_OSMI2_6hA HEK293_TMG_6hB EFTUD2 protein_coding protein_coding 144.1891 170.7626 117.9266 28.13179 4.803173 -0.5340653 12.049196 12.94011 1.903359 8.453404 1.2458112 -2.7587847 0.06466250 0.0643000 0.01566667 -0.04863333 5.124848e-01 2.399206e-49 FALSE TRUE
ENST00000592576 ENSG00000108883 HEK293_OSMI2_6hA HEK293_TMG_6hB EFTUD2 protein_coding protein_coding 144.1891 170.7626 117.9266 28.13179 4.803173 -0.5340653 60.783250 78.42059 42.265981 13.048416 1.8679711 -0.8915782 0.41164167 0.4586667 0.35910000 -0.09956667 1.731771e-01 2.399206e-49 FALSE TRUE
MSTRG.14462.9 ENSG00000108883 HEK293_OSMI2_6hA HEK293_TMG_6hB EFTUD2 protein_coding   144.1891 170.7626 117.9266 28.13179 4.803173 -0.5340653 41.492149 47.73664 52.317726 4.897642 3.6069758 0.1321763 0.32055417 0.2865667 0.44286667 0.15630000 1.660717e-02 2.399206e-49 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000108883 E001 54.0388105 6.471414e-04 6.568449e-02 2.154641e-01 17 44849948 44850809 862 - 1.644 1.750 0.359
ENSG00000108883 E002 42.2629382 8.571211e-03 6.614880e-01 8.108125e-01 17 44850810 44850865 56 - 1.575 1.624 0.165
ENSG00000108883 E003 62.3289132 7.160137e-04 1.133167e-01 3.046733e-01 17 44850866 44850915 50 - 1.712 1.800 0.298
ENSG00000108883 E004 53.8215279 1.129931e-03 3.396488e-01 5.776915e-01 17 44850916 44850916 1 - 1.669 1.730 0.205
ENSG00000108883 E005 424.0616604 1.789978e-03 5.869025e-06 1.324688e-04 17 44850917 44851046 130 - 2.503 2.648 0.484
ENSG00000108883 E006 704.5424932 3.171416e-03 2.298455e-03 1.904330e-02 17 44851047 44851119 73 - 2.744 2.861 0.391
ENSG00000108883 E007 1107.1033582 3.124924e-03 1.692280e-03 1.496813e-02 17 44851120 44851256 137 - 2.944 3.057 0.376
ENSG00000108883 E008 1313.4669910 9.612308e-04 1.074278e-06 3.026441e-05 17 44851257 44851369 113 - 3.022 3.128 0.354
ENSG00000108883 E009 1272.2784990 7.792857e-04 1.932535e-09 1.068323e-07 17 44851710 44851817 108 - 3.000 3.119 0.394
ENSG00000108883 E010 1375.2905997 7.486761e-04 7.393162e-12 6.515459e-10 17 44852409 44852562 154 - 3.025 3.156 0.433
ENSG00000108883 E011 800.2108220 3.100833e-03 3.134278e-07 1.025376e-05 17 44853296 44853390 95 - 2.760 2.934 0.579
ENSG00000108883 E012 962.6489243 1.078512e-03 5.628286e-13 6.049446e-11 17 44853517 44853635 119 - 2.846 3.010 0.544
ENSG00000108883 E013 35.8484031 1.728487e-01 2.041545e-01 4.348607e-01 17 44853636 44854268 633 - 1.657 1.472 -0.630
ENSG00000108883 E014 1072.3115355 1.000806e-03 4.907789e-04 5.590659e-03 17 44854269 44854356 88 - 2.950 3.033 0.278
ENSG00000108883 E015 1324.5378990 6.480138e-04 3.003843e-02 1.274614e-01 17 44854556 44854682 127 - 3.064 3.114 0.167
ENSG00000108883 E016 1076.0466908 6.169812e-04 1.366455e-01 3.423709e-01 17 44854918 44854974 57 - 2.981 3.021 0.133
ENSG00000108883 E017 951.9009851 2.554202e-04 4.751552e-01 6.836624e-01 17 44854975 44855004 30 - 2.952 2.953 0.006
ENSG00000108883 E018 1173.1537900 8.041652e-05 7.998076e-01 8.962515e-01 17 44857075 44857157 83 - 3.039 3.046 0.025
ENSG00000108883 E019 4.2523221 6.031300e-03 4.210587e-01 6.444754e-01 17 44857158 44857639 482 - 0.766 0.658 -0.443
ENSG00000108883 E020 1183.4467347 3.190856e-04 8.537466e-01 9.269777e-01 17 44859080 44859181 102 - 3.038 3.053 0.048
ENSG00000108883 E021 2.4880878 8.951797e-03 1.718944e-01 3.930716e-01 17 44859182 44859649 468 - 0.365 0.610 1.222
ENSG00000108883 E022 1252.7881018 9.331992e-05 6.652404e-01 8.131736e-01 17 44859905 44860045 141 - 3.062 3.077 0.051
ENSG00000108883 E023 3.8860449 7.275877e-03 1.191859e-02 6.610231e-02 17 44860046 44860431 386 - 0.880 0.527 -1.477
ENSG00000108883 E024 685.6134988 2.876720e-04 6.910050e-01 8.297229e-01 17 44860432 44860453 22 - 2.799 2.817 0.059
ENSG00000108883 E025 985.7449435 9.562303e-05 5.877279e-01 7.621447e-01 17 44860454 44860543 90 - 2.956 2.974 0.058
ENSG00000108883 E026 682.6460601 2.399101e-04 2.841544e-02 1.225673e-01 17 44862713 44862752 40 - 2.777 2.824 0.155
ENSG00000108883 E027 544.1185848 2.635901e-04 1.982972e-02 9.530845e-02 17 44862753 44862759 7 - 2.674 2.727 0.176
ENSG00000108883 E028 689.7588959 1.367816e-04 9.708232e-01 9.872449e-01 17 44862760 44862789 30 - 2.806 2.817 0.037
ENSG00000108883 E029 1053.7534569 1.001750e-04 5.891368e-02 2.003143e-01 17 44862790 44862906 117 - 2.974 3.008 0.112
ENSG00000108883 E030 5.5717149 1.034573e-01 7.878503e-01 8.893161e-01 17 44862907 44863595 689 - 0.832 0.776 -0.222
ENSG00000108883 E031 1014.9336674 1.098086e-04 3.797033e-01 6.119438e-01 17 44863655 44863782 128 - 2.967 2.988 0.072
ENSG00000108883 E032 3.3616789 8.038831e-03 6.228986e-01 7.857594e-01 17 44863783 44864062 280 - 0.655 0.585 -0.303
ENSG00000108883 E033 625.4763116 1.463902e-04 1.767359e-01 3.994235e-01 17 44864930 44864969 40 - 2.749 2.781 0.106
ENSG00000108883 E034 852.5909888 8.386981e-05 1.678856e-01 3.877594e-01 17 44864970 44865065 96 - 2.887 2.916 0.096
ENSG00000108883 E035 2.4523787 1.254503e-02 7.965845e-01 8.943314e-01 17 44865066 44865232 167 - 0.505 0.556 0.241
ENSG00000108883 E036 0.2617363 2.054661e-01 5.027353e-01   17 44865242 44865268 27 - 0.000 0.165 10.939
ENSG00000108883 E037 789.8690232 2.017311e-04 5.822599e-01 7.585642e-01 17 44867807 44867897 91 - 2.861 2.880 0.065
ENSG00000108883 E038 665.6567133 2.754312e-04 8.114176e-01 9.030800e-01 17 44868287 44868350 64 - 2.795 2.802 0.024
ENSG00000108883 E039 3.2674923 1.580653e-01 3.622506e-01 5.975360e-01 17 44868351 44868381 31 - 0.441 0.670 1.062
ENSG00000108883 E040 3.4071217 4.568385e-01 7.067666e-01 8.397841e-01 17 44868382 44868479 98 - 0.620 0.623 0.016
ENSG00000108883 E041 882.3552578 8.410293e-04 1.751060e-01 3.972882e-01 17 44872446 44872570 125 - 2.932 2.918 -0.046
ENSG00000108883 E042 12.8139414 3.304823e-01 7.847317e-02 2.417339e-01 17 44872571 44873167 597 - 1.331 0.946 -1.382
ENSG00000108883 E043 8.3847176 5.913153e-01 1.024853e-01 2.862043e-01 17 44875633 44875933 301 - 1.142 0.804 -1.261
ENSG00000108883 E044 394.5421215 1.271802e-03 1.308903e-01 3.332006e-01 17 44875934 44875938 5 - 2.593 2.565 -0.092
ENSG00000108883 E045 1059.7331077 1.123071e-03 3.484932e-02 1.412192e-01 17 44875939 44876088 150 - 3.022 2.993 -0.097
ENSG00000108883 E046 586.9490243 4.916697e-04 6.917172e-05 1.098051e-03 17 44876089 44876100 12 - 2.784 2.722 -0.206
ENSG00000108883 E047 7.4995057 2.624020e-02 7.086272e-01 8.409176e-01 17 44879516 44879555 40 - 0.930 0.885 -0.170
ENSG00000108883 E048 855.8878265 1.420989e-04 2.598708e-11 2.082683e-09 17 44879556 44879638 83 - 2.958 2.878 -0.265
ENSG00000108883 E049 3.3693992 6.909995e-03 1.272079e-02 6.933096e-02 17 44880477 44880553 77 - 0.827 0.462 -1.592
ENSG00000108883 E050 915.7547863 1.179910e-04 2.939485e-18 6.971958e-16 17 44880554 44880642 89 - 3.000 2.899 -0.339
ENSG00000108883 E051 471.8801767 1.228318e-04 1.173439e-12 1.184058e-10 17 44880643 44880644 2 - 2.720 2.607 -0.376
ENSG00000108883 E052 621.5614553 1.066462e-04 4.839356e-17 9.667310e-15 17 44881687 44881722 36 - 2.841 2.724 -0.389
ENSG00000108883 E053 0.2027342 3.192970e-02 8.963503e-01   17 44881723 44881843 121 - 0.000 0.093 9.979
ENSG00000108883 E054 712.5281197 8.857807e-05 1.356017e-13 1.644878e-11 17 44883093 44883128 36 - 2.887 2.793 -0.314
ENSG00000108883 E055 528.2556121 1.091899e-04 6.568215e-08 2.550729e-06 17 44883129 44883139 11 - 2.748 2.669 -0.262
ENSG00000108883 E056 548.9093710 1.070732e-04 2.391455e-08 1.030482e-06 17 44883140 44883158 19 - 2.765 2.686 -0.266
ENSG00000108883 E057 0.8995767 1.915993e-02 4.449783e-01   17 44883556 44883648 93 - 0.365 0.233 -0.894
ENSG00000108883 E058 879.4904081 1.194423e-04 4.994433e-19 1.275443e-16 17 44883649 44883724 76 - 2.985 2.878 -0.354
ENSG00000108883 E059 655.4650873 1.198975e-04 6.074113e-25 3.070012e-22 17 44885256 44885286 31 - 2.879 2.736 -0.476
ENSG00000108883 E060 812.1196371 6.497690e-04 1.192961e-13 1.461704e-11 17 44885287 44885334 48 - 2.960 2.840 -0.398
ENSG00000108883 E061 1009.9950038 6.799267e-04 1.122440e-08 5.202406e-07 17 44886585 44886662 78 - 3.035 2.950 -0.285
ENSG00000108883 E062 1018.8850079 8.258091e-03 1.810028e-01 4.052636e-01 17 44886663 44886750 88 - 3.021 2.967 -0.180
ENSG00000108883 E063 0.9764321 6.506647e-02 4.681998e-01   17 44891834 44892329 496 - 0.366 0.233 -0.898
ENSG00000108883 E064 0.1723744 4.002826e-02 8.960476e-01   17 44894134 44894244 111 - 0.000 0.092 9.977
ENSG00000108883 E065 0.7502172 9.559530e-02 1.475938e-01   17 44894245 44894416 172 - 0.000 0.293 12.001
ENSG00000108883 E066 862.9147583 3.655068e-02 9.312226e-01 9.676617e-01 17 44894417 44894525 109 - 2.927 2.908 -0.065
ENSG00000108883 E067 7.2780607 6.323093e-03 4.711514e-01 6.809851e-01 17 44895826 44895989 164 - 0.950 0.869 -0.306
ENSG00000108883 E068 1.6499815 2.068038e-01 8.291715e-01 9.133283e-01 17 44898975 44899041 67 - 0.440 0.388 -0.279
ENSG00000108883 E069 1.6095728 5.252777e-01 8.217329e-01 9.089563e-01 17 44899042 44899368 327 - 0.367 0.404 0.212
ENSG00000108883 E070 473.6880896 1.629469e+00 6.031528e-01 7.723223e-01 17 44899369 44899651 283 - 2.586 2.686 0.334