ENSG00000104365

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000520201 ENSG00000104365 HEK293_OSMI2_6hA HEK293_TMG_6hB IKBKB protein_coding retained_intron 14.70822 16.77895 17.0752 1.539344 0.2161578 0.02523525 1.418783 1.541736 1.747567 0.6301829 0.11402223 0.1796971 0.09066667 0.08690000 0.10253333 0.01563333 0.883356145 4.192292e-05 TRUE TRUE
ENST00000520810 ENSG00000104365 HEK293_OSMI2_6hA HEK293_TMG_6hB IKBKB protein_coding protein_coding 14.70822 16.77895 17.0752 1.539344 0.2161578 0.02523525 1.354475 1.729955 0.000000 0.8983903 0.00000000 -7.4429063 0.09277083 0.10566667 0.00000000 -0.10566667 0.001495882 4.192292e-05 FALSE TRUE
ENST00000522785 ENSG00000104365 HEK293_OSMI2_6hA HEK293_TMG_6hB IKBKB protein_coding processed_transcript 14.70822 16.77895 17.0752 1.539344 0.2161578 0.02523525 1.098672 1.133723 1.731661 0.5766469 0.19629943 0.6067259 0.07246667 0.06310000 0.10140000 0.03830000 0.695739976 4.192292e-05   FALSE
ENST00000523599 ENSG00000104365 HEK293_OSMI2_6hA HEK293_TMG_6hB IKBKB protein_coding retained_intron 14.70822 16.77895 17.0752 1.539344 0.2161578 0.02523525 1.038542 1.099605 1.286756 0.3134247 0.06561491 0.2248612 0.06756667 0.06353333 0.07536667 0.01183333 0.886881294 4.192292e-05 FALSE TRUE
MSTRG.31448.1 ENSG00000104365 HEK293_OSMI2_6hA HEK293_TMG_6hB IKBKB protein_coding   14.70822 16.77895 17.0752 1.539344 0.2161578 0.02523525 3.304409 4.638975 3.380426 1.5140050 0.20428782 -0.4554459 0.23865833 0.29173333 0.19783333 -0.09390000 0.871109145 4.192292e-05 FALSE TRUE
MSTRG.31448.12 ENSG00000104365 HEK293_OSMI2_6hA HEK293_TMG_6hB IKBKB protein_coding   14.70822 16.77895 17.0752 1.539344 0.2161578 0.02523525 1.512749 1.403366 1.828007 0.4971433 0.32821656 0.3790072 0.10570000 0.08090000 0.10663333 0.02573333 0.837526422 4.192292e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000104365 E001 0.2027342 0.0372316249 6.387225e-01   8 42271098 42271126 29 + 0.000 0.105 9.401
ENSG00000104365 E002 0.0000000       8 42271302 42271309 8 +      
ENSG00000104365 E003 0.0000000       8 42271310 42271315 6 +      
ENSG00000104365 E004 0.0000000       8 42271316 42271317 2 +      
ENSG00000104365 E005 0.0000000       8 42271318 42271318 1 +      
ENSG00000104365 E006 1.6256636 0.0116332481 6.255253e-01 7.876135e-01 8 42271319 42271333 15 + 0.463 0.374 -0.480
ENSG00000104365 E007 3.5298717 0.0941678884 7.575276e-01 8.711445e-01 8 42271334 42271369 36 + 0.679 0.612 -0.290
ENSG00000104365 E008 4.1784831 0.0982492980 9.778604e-01 9.907123e-01 8 42271370 42271388 19 + 0.711 0.693 -0.074
ENSG00000104365 E009 4.3398988 0.0762930085 8.172936e-01 9.065661e-01 8 42271389 42271389 1 + 0.743 0.692 -0.210
ENSG00000104365 E010 6.8372954 0.0175711630 8.219719e-01 9.090892e-01 8 42271390 42271435 46 + 0.873 0.896 0.088
ENSG00000104365 E011 8.3593599 0.0163845318 5.663487e-01 7.475500e-01 8 42271436 42271462 27 + 0.916 0.979 0.238
ENSG00000104365 E012 9.2903939 0.0298350026 5.845786e-01 7.600574e-01 8 42271463 42271469 7 + 0.954 1.019 0.242
ENSG00000104365 E013 0.1426347 0.0315626651 3.642455e-01   8 42271470 42271571 102 + 0.140 0.000 -13.493
ENSG00000104365 E014 0.2852693 0.2797072166 1.861383e-01   8 42271572 42271586 15 + 0.243 0.000 -13.296
ENSG00000104365 E015 0.9928828 0.3396285414 9.720726e-01   8 42271587 42271733 147 + 0.325 0.311 -0.088
ENSG00000104365 E016 0.9762444 0.0156286727 6.639764e-01   8 42271734 42272082 349 + 0.246 0.320 0.517
ENSG00000104365 E017 44.7840078 0.0007754885 8.416354e-01 9.204008e-01 8 42272083 42272205 123 + 1.652 1.655 0.013
ENSG00000104365 E018 1.1909328 0.0152769342 4.335204e-01   8 42272206 42272429 224 + 0.402 0.260 -0.894
ENSG00000104365 E019 35.9686500 0.0010878380 5.165082e-01 7.126663e-01 8 42288634 42288728 95 + 1.543 1.575 0.108
ENSG00000104365 E020 28.1168901 0.0114699992 5.540419e-01 7.391442e-01 8 42290156 42290167 12 + 1.489 1.430 -0.203
ENSG00000104365 E021 33.2643059 0.0013776130 3.025788e-01 5.431261e-01 8 42290168 42290191 24 + 1.566 1.496 -0.242
ENSG00000104365 E022 43.0788211 0.0016988091 7.192298e-01 8.476773e-01 8 42290192 42290228 37 + 1.629 1.642 0.044
ENSG00000104365 E023 46.4725045 0.0008458813 6.362002e-01 7.944416e-01 8 42290229 42290273 45 + 1.687 1.655 -0.108
ENSG00000104365 E024 54.1853486 0.0083216151 3.499262e-01 5.871932e-01 8 42293443 42293512 70 + 1.776 1.708 -0.230
ENSG00000104365 E025 2.3417308 0.0627706555 5.268631e-02 1.859382e-01 8 42293513 42293568 56 + 0.683 0.323 -1.794
ENSG00000104365 E026 69.2975058 0.0005595337 4.362065e-02 1.641870e-01 8 42305187 42305275 89 + 1.892 1.799 -0.313
ENSG00000104365 E027 35.6591503 0.0211643754 9.464580e-01 9.755659e-01 8 42306343 42306367 25 + 1.566 1.548 -0.061
ENSG00000104365 E028 51.9519208 0.0079546363 3.171683e-01 5.571634e-01 8 42306368 42306432 65 + 1.758 1.685 -0.249
ENSG00000104365 E029 74.8832580 0.0049037688 5.463544e-01 7.337162e-01 8 42308901 42309025 125 + 1.897 1.857 -0.135
ENSG00000104365 E030 0.0000000       8 42309462 42309765 304 +      
ENSG00000104365 E031 0.1426347 0.0315626651 3.642455e-01   8 42314025 42314321 297 + 0.140 0.000 -13.493
ENSG00000104365 E032 80.7167886 0.0040258262 1.119494e-01 3.023327e-01 8 42314322 42314429 108 + 1.955 1.870 -0.286
ENSG00000104365 E033 87.3535345 0.0005712325 7.990715e-02 2.446424e-01 8 42316210 42316339 130 + 1.984 1.910 -0.248
ENSG00000104365 E034 113.5405746 0.0057314762 3.383156e-02 1.384174e-01 8 42316710 42316904 195 + 2.114 2.006 -0.362
ENSG00000104365 E035 0.8571428 0.0168391680 4.300135e-01   8 42316905 42317224 320 + 0.331 0.190 -1.064
ENSG00000104365 E036 60.4534019 0.0029754547 3.757889e-01 6.088367e-01 8 42317657 42317709 53 + 1.813 1.763 -0.170
ENSG00000104365 E037 63.6315267 0.0006604409 5.962996e-01 7.678543e-01 8 42317710 42317771 62 + 1.790 1.807 0.058
ENSG00000104365 E038 63.7109671 0.0054230040 3.953454e-01 6.246103e-01 8 42318552 42318607 56 + 1.774 1.814 0.136
ENSG00000104365 E039 63.1861464 0.0032487166 2.213853e-01 4.551392e-01 8 42318608 42318675 68 + 1.762 1.817 0.186
ENSG00000104365 E040 23.5642019 0.0806071738 8.704583e-02 2.583520e-01 8 42318676 42318864 189 + 1.496 1.280 -0.751
ENSG00000104365 E041 19.2762634 0.1152756351 1.211549e-01 3.176950e-01 8 42319156 42319249 94 + 1.413 1.202 -0.735
ENSG00000104365 E042 11.8597866 0.1421121893 1.753773e-01 3.976807e-01 8 42319250 42319269 20 + 1.201 1.017 -0.662
ENSG00000104365 E043 127.3892590 0.0003945813 9.669879e-01 9.853933e-01 8 42319270 42319421 152 + 2.104 2.099 -0.019
ENSG00000104365 E044 13.2995578 0.0986331677 3.273647e-01 5.664671e-01 8 42319422 42319584 163 + 1.210 1.097 -0.403
ENSG00000104365 E045 84.9974268 0.0005507189 6.866078e-01 8.268868e-01 8 42319585 42319646 62 + 1.940 1.917 -0.077
ENSG00000104365 E046 18.5181477 0.0057689675 5.887875e-03 3.918858e-02 8 42319647 42319752 106 + 1.405 1.167 -0.836
ENSG00000104365 E047 16.4637569 0.0026283789 1.492210e-01 3.611137e-01 8 42319753 42319870 118 + 1.302 1.174 -0.452
ENSG00000104365 E048 48.2706459 0.0728241251 1.109776e-01 3.005686e-01 8 42319871 42320472 602 + 1.776 1.610 -0.561
ENSG00000104365 E049 26.4879728 0.0889408897 4.929573e-01 6.959356e-01 8 42320473 42320674 202 + 1.467 1.409 -0.199
ENSG00000104365 E050 11.8036942 0.1515601484 6.788779e-01 8.220431e-01 8 42320675 42320705 31 + 1.092 1.106 0.049
ENSG00000104365 E051 12.9350326 0.0550702943 4.782172e-01 6.859372e-01 8 42320706 42320734 29 + 1.178 1.103 -0.269
ENSG00000104365 E052 112.5725984 0.0003670322 4.095655e-01 6.357418e-01 8 42320735 42320844 110 + 2.066 2.032 -0.117
ENSG00000104365 E053 21.6427063 0.0603606182 1.624027e-01 3.803377e-01 8 42320845 42321895 1051 + 1.436 1.267 -0.587
ENSG00000104365 E054 91.3607972 0.0004573163 1.354194e-01 3.404289e-01 8 42321896 42321945 50 + 1.994 1.931 -0.210
ENSG00000104365 E055 109.8358761 0.0004403874 1.107409e-01 3.002050e-01 8 42322054 42322153 100 + 2.071 2.009 -0.206
ENSG00000104365 E056 3.8899661 0.0970206494 9.917737e-01 9.976121e-01 8 42322154 42322346 193 + 0.680 0.703 0.095
ENSG00000104365 E057 92.5376746 0.0010232580 9.306772e-01 9.673391e-01 8 42322347 42322417 71 + 1.964 1.960 -0.014
ENSG00000104365 E058 64.9010901 0.0024575402 3.203208e-01 5.599943e-01 8 42322418 42322440 23 + 1.787 1.828 0.139
ENSG00000104365 E059 74.3461096 0.0064814809 3.881813e-03 2.848346e-02 8 42322441 42322494 54 + 1.769 1.924 0.522
ENSG00000104365 E060 1.7533389 0.0466370410 4.344032e-01 6.545495e-01 8 42325294 42325361 68 + 0.518 0.372 -0.762
ENSG00000104365 E061 1.5043262 0.0225564814 4.716881e-02 1.729387e-01 8 42325610 42325969 360 + 0.140 0.504 2.520
ENSG00000104365 E062 124.6468496 0.0007464380 3.226594e-06 7.900085e-05 8 42325970 42326097 128 + 1.992 2.145 0.512
ENSG00000104365 E063 8.8006021 0.0426938154 2.557145e-01 4.944010e-01 8 42326098 42326468 371 + 1.071 0.908 -0.602
ENSG00000104365 E064 119.8068855 0.0004089810 1.695620e-06 4.516799e-05 8 42329124 42329214 91 + 1.978 2.133 0.518
ENSG00000104365 E065 13.0200611 0.0134596673 3.178668e-02 1.325763e-01 8 42329215 42329367 153 + 1.260 1.034 -0.807
ENSG00000104365 E066 10.0346904 0.0346210777 1.938381e-01 4.219264e-01 8 42329368 42329499 132 + 1.123 0.953 -0.623
ENSG00000104365 E067 52.3488698 0.0294931248 3.806632e-01 6.127465e-01 8 42329500 42330913 1414 + 1.760 1.689 -0.239
ENSG00000104365 E068 141.9630878 0.0015268361 1.001365e-05 2.099442e-04 8 42330914 42331206 293 + 2.057 2.204 0.493
ENSG00000104365 E069 288.6005921 0.0014791338 1.398367e-03 1.288733e-02 8 42331207 42332460 1254 + 2.406 2.483 0.254