ENSG00000104133

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000261866 ENSG00000104133 HEK293_OSMI2_6hA HEK293_TMG_6hB SPG11 protein_coding protein_coding 5.644978 4.806015 7.607732 0.4752062 1.115052 0.6615216 2.1502372 1.3703489 3.2414991 0.3692384 0.61517257 1.2360720 0.36462917 0.28656667 0.43496667 0.14840000 0.682815768 0.005187902 FALSE TRUE
ENST00000558080 ENSG00000104133 HEK293_OSMI2_6hA HEK293_TMG_6hB SPG11 protein_coding retained_intron 5.644978 4.806015 7.607732 0.4752062 1.115052 0.6615216 0.4627624 0.5196244 0.4329760 0.2623977 0.10338684 -0.2577409 0.09008333 0.10776667 0.05553333 -0.05223333 0.984422597 0.005187902   FALSE
ENST00000558138 ENSG00000104133 HEK293_OSMI2_6hA HEK293_TMG_6hB SPG11 protein_coding protein_coding 5.644978 4.806015 7.607732 0.4752062 1.115052 0.6615216 0.4615974 0.6714201 0.1613768 0.1506350 0.05530063 -1.9913724 0.10109583 0.14040000 0.02246667 -0.11793333 0.005187902 0.005187902 FALSE TRUE
ENST00000560299 ENSG00000104133 HEK293_OSMI2_6hA HEK293_TMG_6hB SPG11 protein_coding retained_intron 5.644978 4.806015 7.607732 0.4752062 1.115052 0.6615216 0.4382744 0.2397053 1.2048767 0.2397053 0.95907938 2.2825115 0.07218750 0.05873333 0.13116667 0.07243333 0.628557196 0.005187902   FALSE
ENST00000683753 ENSG00000104133 HEK293_OSMI2_6hA HEK293_TMG_6hB SPG11 protein_coding retained_intron 5.644978 4.806015 7.607732 0.4752062 1.115052 0.6615216 0.2385475 0.3088454 0.0000000 0.2109596 0.00000000 -4.9947852 0.05296250 0.05913333 0.00000000 -0.05913333 0.276333955 0.005187902 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000104133 E001 1.2105377 0.6622216878 1.666476e-01   15 44554818 44555209 392 - 0.465 0.000 -13.745
ENSG00000104133 E002 0.0000000       15 44562696 44562696 1 -      
ENSG00000104133 E003 0.1308682 0.0326491905 3.379952e-01   15 44562697 44562715 19 - 0.000 0.146 12.053
ENSG00000104133 E004 10.2304247 0.1950726931 7.512602e-02 0.2350861631 15 44562716 44562853 138 - 0.853 1.227 1.372
ENSG00000104133 E005 40.8245970 0.6645288032 2.014630e-01 0.4315143754 15 44562854 44563120 267 - 1.437 1.789 1.198
ENSG00000104133 E006 16.1969097 0.3117575477 8.127918e-02 0.2474023847 15 44563121 44563131 11 - 1.026 1.421 1.397
ENSG00000104133 E007 25.3645631 0.5244849032 2.157264e-01 0.4483034098 15 44563132 44563246 115 - 1.263 1.572 1.068
ENSG00000104133 E008 11.1663638 0.2871938075 2.125965e-01 0.4447918992 15 44563247 44563251 5 - 0.962 1.212 0.906
ENSG00000104133 E009 17.1944110 0.3745359468 1.619034e-01 0.3795754727 15 44563252 44563301 50 - 1.092 1.417 1.147
ENSG00000104133 E010 10.7531236 0.0044046939 1.522543e-02 0.0789384497 15 44564547 44564552 6 - 0.932 1.198 0.969
ENSG00000104133 E011 29.4044505 0.0012885687 2.986699e-03 0.0233190868 15 44564553 44564698 146 - 1.375 1.586 0.725
ENSG00000104133 E012 34.5326826 0.0115693730 6.525489e-04 0.0070293564 15 44565854 44565965 112 - 1.405 1.685 0.959
ENSG00000104133 E013 27.4406663 0.0053970208 2.698469e-04 0.0034254902 15 44565966 44566009 44 - 1.303 1.590 0.991
ENSG00000104133 E014 3.4446231 0.5542066736 1.953061e-01 0.4237245923 15 44566010 44566144 135 - 0.777 0.259 -2.613
ENSG00000104133 E015 27.6733845 0.0016879409 9.146789e-05 0.0013866587 15 44566217 44566305 89 - 1.308 1.590 0.974
ENSG00000104133 E016 0.3503582 0.0393377979 7.794511e-01   15 44567338 44567423 86 - 0.101 0.146 0.613
ENSG00000104133 E017 38.0767775 0.0027436354 4.582696e-03 0.0323864853 15 44567424 44567592 169 - 1.495 1.685 0.648
ENSG00000104133 E018 26.2869760 0.0013216863 2.307385e-02 0.1061944729 15 44569398 44569505 108 - 1.350 1.523 0.596
ENSG00000104133 E019 18.7258837 0.0028210942 3.759054e-01 0.6089427637 15 44570525 44570552 28 - 1.248 1.338 0.315
ENSG00000104133 E020 28.8448481 0.0017595386 2.046643e-03 0.0173757392 15 44570553 44570652 100 - 1.365 1.586 0.759
ENSG00000104133 E021 14.9496292 0.0022727345 3.828842e-02 0.1503536439 15 44570653 44570658 6 - 1.105 1.304 0.707
ENSG00000104133 E022 1.6402066 0.0568517440 9.940622e-01 0.9986356770 15 44572469 44572682 214 - 0.409 0.415 0.033
ENSG00000104133 E023 31.0630316 0.0012164822 2.516332e-03 0.0204357040 15 44572683 44572820 138 - 1.402 1.612 0.718
ENSG00000104133 E024 0.7204775 0.0660062047 1.751609e-01   15 44572821 44572824 4 - 0.100 0.345 2.218
ENSG00000104133 E025 0.3088520 0.0267434745 7.862998e-01   15 44573119 44573356 238 - 0.101 0.146 0.610
ENSG00000104133 E026 0.1308682 0.0326491905 3.379952e-01   15 44573357 44573357 1 - 0.000 0.146 12.053
ENSG00000104133 E027 0.1308682 0.0326491905 3.379952e-01   15 44573358 44573368 11 - 0.000 0.146 12.053
ENSG00000104133 E028 3.8631844 0.0191454148 6.159835e-01 0.7809959891 15 44573369 44573546 178 - 0.641 0.733 0.382
ENSG00000104133 E029 48.7637620 0.0007542807 3.203574e-01 0.5600179138 15 44573547 44573745 199 - 1.659 1.730 0.240
ENSG00000104133 E030 1.4582786 0.0122209451 8.234952e-01 0.9099680029 15 44573746 44573820 75 - 0.363 0.414 0.290
ENSG00000104133 E031 30.5485635 0.0016532616 7.229191e-01 0.8499133816 15 44574902 44575041 140 - 1.488 1.485 -0.010
ENSG00000104133 E032 4.3423602 0.4129849898 7.288308e-01 0.8534988379 15 44575042 44575272 231 - 0.623 0.819 0.807
ENSG00000104133 E033 29.6361981 0.0014401193 3.000375e-01 0.5404403861 15 44583814 44583935 122 - 1.491 1.443 -0.165
ENSG00000104133 E034 41.5468603 0.0024449324 6.298881e-01 0.7903818304 15 44583936 44584164 229 - 1.601 1.651 0.172
ENSG00000104133 E035 30.2643147 0.0168549076 7.709391e-01 0.8792368410 15 44584165 44584258 94 - 1.489 1.494 0.019
ENSG00000104133 E036 32.6740196 0.0316405313 9.704941e-01 0.9871005107 15 44584259 44584414 156 - 1.508 1.545 0.124
ENSG00000104133 E037 25.2434319 0.0015683981 7.927585e-01 0.8920411005 15 44584415 44584558 144 - 1.398 1.436 0.133
ENSG00000104133 E038 11.5342325 0.0292299324 4.372295e-01 0.6566174844 15 44585636 44585651 16 - 1.027 1.146 0.430
ENSG00000104133 E039 25.4900902 0.0274903104 1.939821e-01 0.4221032155 15 44585652 44585761 110 - 1.348 1.495 0.508
ENSG00000104133 E040 22.0989065 0.0163840004 1.617743e-01 0.3794036392 15 44585762 44585837 76 - 1.294 1.437 0.497
ENSG00000104133 E041 15.4935645 0.0188116167 1.010939e-01 0.2837651036 15 44585838 44585850 13 - 1.129 1.313 0.650
ENSG00000104133 E042 0.1779838 0.0362606319 6.996510e-01   15 44588567 44588638 72 - 0.101 0.000 -10.866
ENSG00000104133 E043 31.9186486 0.0012489108 6.875888e-03 0.0440668693 15 44589252 44589414 163 - 1.428 1.616 0.641
ENSG00000104133 E044 0.0000000       15 44590421 44590937 517 -      
ENSG00000104133 E045 26.0247987 0.0017780159 1.932742e-01 0.4211779962 15 44592331 44592438 108 - 1.379 1.490 0.381
ENSG00000104133 E046 45.2794699 0.0068588312 8.141103e-01 0.9047073065 15 44595259 44595459 201 - 1.650 1.660 0.032
ENSG00000104133 E047 0.1614157 0.0331199907 7.002532e-01   15 44596060 44596082 23 - 0.101 0.000 -10.864
ENSG00000104133 E048 54.9079342 0.0055173966 4.429522e-01 0.6607185935 15 44596083 44596355 273 - 1.746 1.723 -0.077
ENSG00000104133 E049 18.5581858 0.0022552142 3.765937e-03 0.0278271448 15 44596784 44596803 20 - 1.355 1.127 -0.806
ENSG00000104133 E050 32.2283481 0.0063772531 2.205632e-03 0.0184379543 15 44596804 44596943 140 - 1.582 1.375 -0.710
ENSG00000104133 E051 0.6622309 0.1739476574 1.210710e-01   15 44596944 44597172 229 - 0.312 0.000 -12.876
ENSG00000104133 E052 0.3228314 0.3785411315 4.414386e-01   15 44597385 44598264 880 - 0.183 0.000 -11.870
ENSG00000104133 E053 20.6841492 0.0021687665 1.419264e-02 0.0751045771 15 44598265 44598353 89 - 1.393 1.219 -0.611
ENSG00000104133 E054 13.0081801 0.0025157574 1.065244e-02 0.0609024417 15 44598354 44598373 20 - 1.221 0.990 -0.834
ENSG00000104133 E055 0.7063259 0.7173495042 8.382581e-01   15 44598374 44598630 257 - 0.260 0.148 -1.018
ENSG00000104133 E056 31.4902084 0.0014832842 4.079144e-01 0.6343934451 15 44598631 44598836 206 - 1.513 1.479 -0.114
ENSG00000104133 E057 0.7502172 0.1759150634 2.321044e-02   15 44600260 44600466 207 - 0.000 0.422 14.099
ENSG00000104133 E058 16.9954853 0.0106562399 3.045892e-01 0.5451985520 15 44600467 44600498 32 - 1.192 1.307 0.404
ENSG00000104133 E059 24.5093597 0.0212161464 9.927940e-01 0.9980598375 15 44600499 44600632 134 - 1.390 1.403 0.043
ENSG00000104133 E060 1.2665030 0.0150635896 6.013217e-01   15 44601739 44601824 86 - 0.310 0.414 0.611
ENSG00000104133 E061 0.9388700 0.0576998287 6.464442e-01   15 44604105 44604197 93 - 0.251 0.342 0.615
ENSG00000104133 E062 1.3136187 0.0616662911 8.745896e-01   15 44604198 44604802 605 - 0.364 0.342 -0.131
ENSG00000104133 E063 1.6705665 0.0337274386 9.754910e-01 0.9895573531 15 44604803 44604927 125 - 0.409 0.415 0.034
ENSG00000104133 E064 15.3941048 0.0336541087 1.715095e-01 0.3925266570 15 44606025 44606034 10 - 1.265 1.102 -0.578
ENSG00000104133 E065 19.2255261 0.0249665873 4.698942e-02 0.1725268639 15 44606035 44606091 57 - 1.368 1.156 -0.747
ENSG00000104133 E066 0.3503582 0.0393377979 7.794511e-01   15 44606092 44606158 67 - 0.101 0.146 0.613
ENSG00000104133 E067 27.8055422 0.0023849689 4.020382e-02 0.1552135597 15 44608444 44608605 162 - 1.494 1.369 -0.433
ENSG00000104133 E068 20.2817182 0.0018107591 4.535739e-01 0.6683853493 15 44610840 44610917 78 - 1.290 1.368 0.271
ENSG00000104133 E069 23.4658091 0.0019142273 8.075716e-01 0.9007298751 15 44610918 44610985 68 - 1.374 1.376 0.006
ENSG00000104133 E070 23.0672199 0.0079944135 9.855950e-01 0.9946114767 15 44613430 44613508 79 - 1.359 1.378 0.065
ENSG00000104133 E071 14.8263143 0.0023726891 6.815293e-01 0.8236084944 15 44613509 44613536 28 - 1.193 1.176 -0.063
ENSG00000104133 E072 16.3052474 0.0021099875 1.618830e-01 0.3795587731 15 44615363 44615427 65 - 1.266 1.164 -0.363
ENSG00000104133 E073 24.0430920 0.0092183156 6.235987e-03 0.0408869947 15 44615428 44615566 139 - 1.471 1.249 -0.769
ENSG00000104133 E074 0.7088986 0.1581249371 1.896627e-01   15 44620125 44620189 65 - 0.101 0.346 2.223
ENSG00000104133 E075 36.7469732 0.0086156316 4.606583e-03 0.0325085936 15 44620190 44620403 214 - 1.639 1.443 -0.672
ENSG00000104133 E076 0.4868358 0.2869876994 8.457860e-01   15 44620404 44621709 1306 - 0.185 0.144 -0.439
ENSG00000104133 E077 0.0000000       15 44621710 44621758 49 -      
ENSG00000104133 E078 29.5758795 0.0124684935 4.478630e-02 0.1671046928 15 44621759 44621934 176 - 1.535 1.382 -0.526
ENSG00000104133 E079 17.6138774 0.0051076539 4.323215e-01 0.6529886985 15 44622220 44622347 128 - 1.278 1.230 -0.170
ENSG00000104133 E080 0.0000000       15 44622348 44622475 128 -      
ENSG00000104133 E081 0.7791197 0.0907885469 9.415419e-01   15 44622476 44622727 252 - 0.252 0.253 0.002
ENSG00000104133 E082 13.5431613 0.0026534026 5.944201e-02 0.2015709563 15 44622728 44622799 72 - 1.214 1.056 -0.570
ENSG00000104133 E083 0.0000000       15 44625709 44626330 622 -      
ENSG00000104133 E084 28.8746671 0.0015410080 1.965030e-03 0.0168368924 15 44626331 44626507 177 - 1.536 1.345 -0.659
ENSG00000104133 E085 0.0000000       15 44627636 44628668 1033 -      
ENSG00000104133 E086 32.5731819 0.0147256934 1.517852e-03 0.0137380081 15 44628669 44628844 176 - 1.609 1.351 -0.887
ENSG00000104133 E087 26.7609968 0.0014695964 3.989284e-04 0.0047217187 15 44629233 44629388 156 - 1.519 1.287 -0.806
ENSG00000104133 E088 0.1426347 0.0321121655 7.005566e-01   15 44631455 44631536 82 - 0.101 0.000 -10.862
ENSG00000104133 E089 0.0000000       15 44633470 44633504 35 -      
ENSG00000104133 E090 21.9846824 0.0016115545 6.516103e-02 0.2142549960 15 44633505 44633637 133 - 1.398 1.278 -0.419
ENSG00000104133 E091 19.1392213 0.0112500004 2.641105e-01 0.5033550323 15 44648866 44649011 146 - 1.330 1.247 -0.288
ENSG00000104133 E092 49.3597998 0.0026380218 2.773435e-05 0.0005037359 15 44651491 44651939 449 - 1.765 1.544 -0.750
ENSG00000104133 E093 0.0000000       15 44651940 44652070 131 -      
ENSG00000104133 E094 28.3114873 0.0043936544 1.422835e-04 0.0020079069 15 44652129 44652266 138 - 1.546 1.278 -0.926
ENSG00000104133 E095 23.6777429 0.0132610134 4.131283e-04 0.0048591792 15 44657095 44657263 169 - 1.485 1.183 -1.054
ENSG00000104133 E096 9.6476278 0.1433467951 3.710054e-01 0.6047323310 15 44657264 44657296 33 - 1.068 0.962 -0.390
ENSG00000104133 E097 23.3850442 0.0028463995 1.186288e-03 0.0113261967 15 44659079 44659303 225 - 1.461 1.229 -0.809
ENSG00000104133 E098 21.5919828 0.0015609136 4.713506e-04 0.0054151112 15 44660432 44660616 185 - 1.433 1.175 -0.900
ENSG00000104133 E099 12.7497790 0.0025017040 9.180995e-01 0.9612633200 15 44663391 44663688 298 - 1.122 1.151 0.103