ENSG00000101868

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000379059 ENSG00000101868 HEK293_OSMI2_6hA HEK293_TMG_6hB POLA1 protein_coding protein_coding 17.6601 10.83813 27.20313 3.298168 1.192467 1.326857 1.126494 0.6030058 1.189305 0.3105130 0.2813175 0.9682265 0.06815417 0.09793333 0.04300000 -0.05493333 1.000000e+00 2.118684e-14 FALSE TRUE
ENST00000379068 ENSG00000101868 HEK293_OSMI2_6hA HEK293_TMG_6hB POLA1 protein_coding protein_coding 17.6601 10.83813 27.20313 3.298168 1.192467 1.326857 11.905950 5.8050970 23.097551 2.0867531 1.0292645 1.9904892 0.60174583 0.50043333 0.84910000 0.34866667 1.626627e-04 2.118684e-14 FALSE TRUE
ENST00000679301 ENSG00000101868 HEK293_OSMI2_6hA HEK293_TMG_6hB POLA1 protein_coding processed_transcript 17.6601 10.83813 27.20313 3.298168 1.192467 1.326857 2.045919 3.4728420 0.000000 1.6314686 0.0000000 -8.4441212 0.19441250 0.28100000 0.00000000 -0.28100000 2.118684e-14 2.118684e-14 FALSE TRUE
MSTRG.34044.1 ENSG00000101868 HEK293_OSMI2_6hA HEK293_TMG_6hB POLA1 protein_coding   17.6601 10.83813 27.20313 3.298168 1.192467 1.326857 1.632585 0.2066237 1.546081 0.1079855 0.1889339 2.8446539 0.07131667 0.01513333 0.05723333 0.04210000 1.656820e-01 2.118684e-14 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000101868 E001 0.3807181 0.0308008043 4.560851e-01   X 24693849 24693872 24 + 0.076 0.188 1.495
ENSG00000101868 E002 1.5062021 0.0126398636 2.580265e-01 4.967468e-01 X 24693873 24693908 36 + 0.405 0.188 -1.506
ENSG00000101868 E003 2.1308709 0.0095697311 8.540836e-02 2.553485e-01 X 24693909 24693917 9 + 0.520 0.188 -2.091
ENSG00000101868 E004 17.6151985 0.0883765633 3.076907e-01 5.483461e-01 X 24693918 24693940 23 + 1.252 1.107 -0.517
ENSG00000101868 E005 20.3004495 0.0500352099 3.994652e-01 6.278483e-01 X 24693941 24693946 6 + 1.299 1.205 -0.330
ENSG00000101868 E006 45.0486417 0.0110056033 5.565635e-02 1.928346e-01 X 24693947 24693986 40 + 1.643 1.503 -0.477
ENSG00000101868 E007 45.4515375 0.0165821765 6.994348e-02 2.246934e-01 X 24693987 24694004 18 + 1.647 1.503 -0.491
ENSG00000101868 E008 82.1630247 0.0059439856 9.253826e-02 2.684786e-01 X 24699425 24699549 125 + 1.890 1.802 -0.297
ENSG00000101868 E009 86.4427979 0.0029381658 3.382534e-03 2.565230e-02 X 24703251 24703347 97 + 1.925 1.784 -0.476
ENSG00000101868 E010 97.9796512 0.0024334944 1.315220e-05 2.661836e-04 X 24704389 24704469 81 + 1.992 1.788 -0.687
ENSG00000101868 E011 0.3206185 0.0274424043 7.260296e-01   X 24714317 24714553 237 + 0.141 0.000 -11.708
ENSG00000101868 E012 110.1268435 0.0077799028 1.759389e-04 2.402580e-03 X 24714554 24714669 116 + 2.044 1.825 -0.739
ENSG00000101868 E013 85.4678131 0.0006468251 2.022151e-06 5.273460e-05 X 24715141 24715203 63 + 1.935 1.724 -0.713
ENSG00000101868 E014 0.6246688 0.0191661843 2.673003e-01   X 24715204 24716361 1158 + 0.248 0.000 -12.708
ENSG00000101868 E015 112.0968797 0.0019688835 2.320055e-05 4.336328e-04 X 24716362 24716454 93 + 2.044 1.862 -0.611
ENSG00000101868 E016 108.3551871 0.0020112606 2.144027e-05 4.054171e-04 X 24716884 24716971 88 + 2.031 1.846 -0.622
ENSG00000101868 E017 162.7696284 0.0003765209 2.650587e-05 4.846368e-04 X 24717290 24717491 202 + 2.193 2.067 -0.421
ENSG00000101868 E018 131.6745941 0.0004094962 2.381445e-03 1.957238e-02 X 24717580 24717758 179 + 2.097 2.000 -0.324
ENSG00000101868 E019 108.8736215 0.0015316116 9.128162e-02 2.660371e-01 X 24723155 24723267 113 + 2.005 1.947 -0.194
ENSG00000101868 E020 100.1117197 0.0024399789 6.231569e-02 2.079798e-01 X 24724335 24724451 117 + 1.970 1.899 -0.237
ENSG00000101868 E021 0.3559677 0.5507396680 1.000000e+00   X 24724452 24724848 397 + 0.145 0.000 -11.753
ENSG00000101868 E022 0.3559677 0.5507396680 1.000000e+00   X 24725211 24725980 770 + 0.145 0.000 -11.753
ENSG00000101868 E023 87.4690515 0.0033563049 6.555703e-03 4.248346e-02 X 24725981 24726055 75 + 1.925 1.793 -0.445
ENSG00000101868 E024 0.8565226 0.8078062583 4.531604e-01   X 24726056 24726932 877 + 0.144 0.428 2.092
ENSG00000101868 E025 108.8376564 0.0041301965 1.481686e-02 7.738242e-02 X 24726933 24727071 139 + 2.014 1.907 -0.359
ENSG00000101868 E026 121.6625720 0.0003740975 2.805208e-02 1.214131e-01 X 24727782 24727936 155 + 2.056 1.988 -0.226
ENSG00000101868 E027 8.3987890 0.0151770037 5.249482e-01 7.184509e-01 X 24727937 24728628 692 + 0.897 0.987 0.336
ENSG00000101868 E028 75.5699061 0.0005639368 7.890488e-01 8.899011e-01 X 24732370 24732454 85 + 1.834 1.836 0.007
ENSG00000101868 E029 63.3182660 0.0007001204 4.357937e-01 6.555803e-01 X 24733755 24733816 62 + 1.765 1.741 -0.082
ENSG00000101868 E030 0.5008152 0.0463367954 4.260779e-01   X 24733817 24734353 537 + 0.198 0.000 -12.297
ENSG00000101868 E031 76.2166006 0.0019380185 5.457985e-01 7.333132e-01 X 24735399 24735488 90 + 1.841 1.826 -0.051
ENSG00000101868 E032 0.1426347 0.0343974465 1.000000e+00   X 24737357 24737624 268 + 0.076 0.000 -10.707
ENSG00000101868 E033 102.7079119 0.0005362904 5.196545e-01 7.147839e-01 X 24737625 24737741 117 + 1.970 1.958 -0.038
ENSG00000101868 E034 119.5617425 0.0047306101 2.777768e-01 5.178581e-01 X 24739375 24739550 176 + 2.041 2.001 -0.134
ENSG00000101868 E035 110.2122320 0.0004576801 1.161270e-02 6.486116e-02 X 24741375 24741504 130 + 2.015 1.929 -0.290
ENSG00000101868 E036 125.0619856 0.0003238131 4.811717e-01 6.878864e-01 X 24742002 24742121 120 + 2.052 2.041 -0.038
ENSG00000101868 E037 114.3438339 0.0003848409 7.679430e-02 2.383734e-01 X 24743230 24743329 100 + 2.022 1.969 -0.179
ENSG00000101868 E038 1.1859435 0.0556581028 3.654675e-01   X 24743330 24743608 279 + 0.247 0.422 1.097
ENSG00000101868 E039 0.3453689 0.0278287168 4.539700e-01   X 24744600 24744893 294 + 0.076 0.188 1.498
ENSG00000101868 E040 97.4984672 0.0004013138 4.594335e-01 6.727404e-01 X 24745418 24745502 85 + 1.945 1.929 -0.054
ENSG00000101868 E041 90.1398435 0.0005490681 7.180251e-01 8.470020e-01 X 24745503 24745542 40 + 1.900 1.929 0.096
ENSG00000101868 E042 157.9021538 0.0004379412 7.663914e-01 8.764426e-01 X 24748311 24748460 150 + 2.149 2.153 0.012
ENSG00000101868 E043 154.5141038 0.0002755293 3.492854e-01 5.866202e-01 X 24748870 24748992 123 + 2.144 2.128 -0.054
ENSG00000101868 E044 0.6709767 0.0839448374 1.000000e+00   X 24775197 24775356 160 + 0.198 0.188 -0.092
ENSG00000101868 E045 0.3032425 0.0260401674 4.009535e-02   X 24791833 24793045 1213 + 0.000 0.318 14.659
ENSG00000101868 E046 0.0000000       X 24793821 24795009 1189 +      
ENSG00000101868 E047 0.5177432 0.0330050621 1.495191e-01   X 24809275 24809495 221 + 0.076 0.319 2.500
ENSG00000101868 E048 85.9309785 0.0013063006 6.890253e-01 8.284529e-01 X 24809898 24809930 33 + 1.888 1.885 -0.012
ENSG00000101868 E049 111.9177854 0.0004249203 7.466783e-01 8.647508e-01 X 24810708 24810800 93 + 2.000 2.002 0.008
ENSG00000101868 E050 169.3167636 0.0004192275 5.120421e-01 7.094901e-01 X 24812658 24812829 172 + 2.182 2.177 -0.017
ENSG00000101868 E051 90.5211767 0.0004612527 7.390023e-01 8.597864e-01 X 24812830 24812863 34 + 1.901 1.929 0.094
ENSG00000101868 E052 156.7124008 0.0003354921 1.605817e-02 8.202324e-02 X 24814979 24815111 133 + 2.119 2.209 0.300
ENSG00000101868 E053 138.4133749 0.0005481667 1.841057e-04 2.495839e-03 X 24821452 24821583 132 + 2.050 2.188 0.461
ENSG00000101868 E054 143.1966516 0.0038689321 9.419059e-04 9.436680e-03 X 24826427 24826601 175 + 2.060 2.214 0.516
ENSG00000101868 E055 149.0400919 0.0096788722 5.946379e-03 3.947741e-02 X 24841652 24841830 179 + 2.066 2.250 0.613
ENSG00000101868 E056 1.3681088 0.2738719397 8.225031e-02   X 24841831 24841983 153 + 0.201 0.574 2.228
ENSG00000101868 E057 140.2252689 0.0063473559 2.399646e-03 1.968196e-02 X 24843546 24843677 132 + 2.044 2.219 0.584
ENSG00000101868 E058 2.2883903 0.1705027542 7.107670e-02 2.268968e-01 X 24845868 24846033 166 + 0.336 0.753 2.002
ENSG00000101868 E059 126.3362580 0.0003677286 3.188979e-06 7.824808e-05 X 24888006 24888122 117 + 2.001 2.172 0.575
ENSG00000101868 E060 0.8402147 0.1499437234 2.153282e-01   X 24889129 24890126 998 + 0.295 0.000 -13.047
ENSG00000101868 E061 0.0000000       X 24913975 24914546 572 +      
ENSG00000101868 E062 118.4333870 0.0031095774 2.226513e-04 2.922049e-03 X 24930453 24930549 97 + 1.970 2.144 0.583
ENSG00000101868 E063 489.0172321 0.0018132670 7.581569e-20 2.185950e-17 X 24995805 24996986 1182 + 2.559 2.796 0.792