• ENSG00000091844
  • 1 Isoform Switch
  • 2 Differential Exon Usage

ENSG00000091844

1 Isoform Switch

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

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TableFilter v0.7.3

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isoform_idColumn filter
gene_idColumn filter
condition_1Column filter
condition_2Column filter
gene_nameColumn filter
gene_biotypeColumn filter
iso_biotypeColumn filter
gene_overall_meanColumn filter
gene_value_1Column filter
gene_value_2Column filter
gene_stderr_1Column filter
gene_stderr_2Column filter
gene_log2_fold_changeColumn filter
iso_overall_meanColumn filter
iso_value_1Column filter
iso_value_2Column filter
iso_stderr_1Column filter
iso_stderr_2Column filter
iso_log2_fold_changeColumn filter
IF_overallColumn filter
IF1Column filter
IF2Column filter
dIFColumn filter
isoform_switch_q_valueColumn filter
gene_switch_q_valueColumn filter
PTCColumn filter
codingPotentialColumn filter
ENST00000206262 ENSG00000091844 HEK293_OSMI2_6hA HEK293_TMG_6hB RGS17 protein_coding protein_coding 2.713581 2.139658 3.000473 0.4569756 0.6216179 0.485883 0.7103582 0.2234394 1.247974 0.04122272 0.08240825 2.4299816 0.2588875 0.1055667 0.4407667 0.3352 0.0005478944 0.0005366928 FALSE TRUE
MSTRG.29186.3 ENSG00000091844 HEK293_OSMI2_6hA HEK293_TMG_6hB RGS17 protein_coding   2.713581 2.139658 3.000473 0.4569756 0.6216179 0.485883 1.9915084 1.9162186 1.752499 0.41694550 0.54035796 -0.1281488 0.7326125 0.8944333 0.5592333 -0.3352 0.0005366928 0.0005366928   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

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TableFilter v0.7.3

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groupIDColumn filter
featureIDColumn filter
exonBaseMeanColumn filter
dispersionColumn filter
pvalueColumn filter
padjColumn filter
seqnamesColumn filter
startColumn filter
endColumn filter
widthColumn filter
strandColumn filter
HEK293_TMG_6hBColumn filter
HEK293_OSMI2_6hAColumn filter
log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hBColumn filter
ENSG00000091844 E001 118.574144 0.0005443109 4.012833e-14 5.378621e-12 6 153004459 153011762 7304 - 2.056 1.858 -0.666
ENSG00000091844 E002 21.836101 0.0023250648 2.718699e-01 5.117415e-01 6 153024262 153024496 235 - 1.276 1.362 0.301
ENSG00000091844 E003 2.533986 0.0095775198 7.863675e-03 4.869577e-02 6 153025114 153025142 29 - 0.360 0.784 1.980
ENSG00000091844 E004 14.143172 0.0023369207 4.097918e-03 2.971603e-02 6 153026454 153026543 90 - 1.047 1.305 0.921
ENSG00000091844 E005 18.699986 0.0019951344 2.685975e-05 4.903679e-04 6 153043900 153044043 144 - 1.131 1.457 1.141
ENSG00000091844 E006 13.050942 0.0029528183 1.302447e-03 1.218317e-02 6 153131124 153131282 159 - 0.993 1.293 1.074