ENSG00000090861

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000261772 ENSG00000090861 HEK293_OSMI2_6hA HEK293_TMG_6hB AARS1 protein_coding protein_coding 84.77547 129.5842 57.32832 24.5782 2.525363 -1.176429 67.332782 108.14469 40.321174 26.353384 2.5349655 -1.42312898 0.77275 0.81193333 0.7023667 -0.1095667 0.51758862 0.03215885 FALSE  
ENST00000674963 ENSG00000090861 HEK293_OSMI2_6hA HEK293_TMG_6hB AARS1 protein_coding protein_coding 84.77547 129.5842 57.32832 24.5782 2.525363 -1.176429 9.195972 10.32024 9.644311 1.272537 0.2595652 -0.09762833 0.11875 0.08386667 0.1689667 0.0851000 0.03215885 0.03215885 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000090861 E001 18.9174510 2.189272e-03 2.592264e-06 6.537362e-05 16 70251983 70252027 45 - 1.495 1.118 -1.319
ENSG00000090861 E002 79.7791805 2.106847e-02 1.205405e-05 2.464253e-04 16 70252028 70252269 242 - 2.089 1.725 -1.227
ENSG00000090861 E003 41.6295398 4.696062e-03 1.168710e-08 5.393313e-07 16 70252270 70252297 28 - 1.808 1.445 -1.238
ENSG00000090861 E004 35.5377122 1.073393e-03 2.669028e-08 1.137707e-06 16 70252298 70252302 5 - 1.729 1.393 -1.150
ENSG00000090861 E005 34.5998720 1.020007e-03 8.697715e-07 2.515450e-05 16 70252303 70252304 2 - 1.698 1.396 -1.032
ENSG00000090861 E006 35.2192210 1.031656e-03 1.856494e-06 4.882691e-05 16 70252305 70252306 2 - 1.698 1.406 -0.997
ENSG00000090861 E007 39.4282630 9.841251e-04 2.685021e-04 3.411735e-03 16 70252307 70252309 3 - 1.698 1.483 -0.734
ENSG00000090861 E008 417.4169375 6.516914e-04 4.316416e-02 1.629781e-01 16 70252310 70252488 179 - 2.530 2.580 0.167
ENSG00000090861 E009 1365.4006572 5.863213e-04 5.368603e-08 2.127187e-06 16 70252489 70252906 418 - 3.014 3.103 0.296
ENSG00000090861 E010 897.5577265 1.237538e-04 1.093115e-04 1.610306e-03 16 70253268 70253381 114 - 2.856 2.913 0.190
ENSG00000090861 E011 72.6946244 6.363635e-02 2.244203e-01 4.587076e-01 16 70253382 70253665 284 - 1.929 1.763 -0.559
ENSG00000090861 E012 42.0068616 7.039447e-02 1.977600e-01 4.268075e-01 16 70253666 70253713 48 - 1.711 1.521 -0.645
ENSG00000090861 E013 862.1066834 1.676794e-04 4.088979e-05 7.013459e-04 16 70253714 70253800 87 - 2.834 2.898 0.212
ENSG00000090861 E014 927.6141255 1.068036e-03 1.670073e-04 2.300215e-03 16 70253919 70254038 120 - 2.852 2.933 0.270
ENSG00000090861 E015 8.9764047 9.956570e-02 8.601377e-01 9.304350e-01 16 70254039 70254268 230 - 0.927 0.954 0.103
ENSG00000090861 E016 4.1831892 1.720917e-01 1.749735e-01 3.971257e-01 16 70254269 70254390 122 - 0.411 0.734 1.485
ENSG00000090861 E017 3.8543885 1.913111e-01 1.117813e-01 3.020460e-01 16 70254391 70254483 93 - 0.314 0.716 1.982
ENSG00000090861 E018 6.6042102 1.455939e-01 3.748899e-01 6.081049e-01 16 70254484 70254620 137 - 0.679 0.871 0.770
ENSG00000090861 E019 829.3879403 1.315269e-03 9.373036e-05 1.416406e-03 16 70254621 70254734 114 - 2.794 2.887 0.311
ENSG00000090861 E020 20.2748129 1.190518e-01 4.216382e-01 6.448802e-01 16 70254735 70255185 451 - 1.373 1.234 -0.486
ENSG00000090861 E021 10.0197425 1.683850e-01 4.434610e-01 6.610362e-01 16 70255442 70255719 278 - 1.086 0.953 -0.488
ENSG00000090861 E022 7.0270228 1.078630e-01 6.382822e-01 7.959160e-01 16 70255720 70255727 8 - 0.923 0.830 -0.356
ENSG00000090861 E023 749.2177485 4.042431e-04 4.254264e-05 7.251549e-04 16 70255728 70255836 109 - 2.764 2.839 0.251
ENSG00000090861 E024 214.1257819 1.266129e-01 1.574310e-01 3.728673e-01 16 70255837 70258032 2196 - 2.430 2.208 -0.742
ENSG00000090861 E025 379.0890203 1.868368e-04 2.668059e-03 2.138969e-02 16 70258033 70258052 20 - 2.475 2.542 0.224
ENSG00000090861 E026 861.0418120 2.143720e-03 8.328772e-02 2.513447e-01 16 70258053 70258217 165 - 2.844 2.894 0.167
ENSG00000090861 E027 8.6551078 1.659883e-02 1.484346e-01 3.600315e-01 16 70258218 70258244 27 - 1.066 0.883 -0.682
ENSG00000090861 E028 24.0227709 1.464702e-01 8.107861e-01 9.027085e-01 16 70258245 70258979 735 - 1.364 1.339 -0.085
ENSG00000090861 E029 561.0473751 1.731259e-04 3.638164e-01 5.989064e-01 16 70258980 70259023 44 - 2.683 2.701 0.061
ENSG00000090861 E030 454.9350632 1.792863e-04 9.601222e-01 9.819134e-01 16 70259024 70259035 12 - 2.605 2.606 0.004
ENSG00000090861 E031 864.5774519 1.117643e-04 4.678867e-03 3.289638e-02 16 70259036 70259186 151 - 2.851 2.894 0.142
ENSG00000090861 E032 708.0663790 1.027258e-04 2.863474e-01 5.270042e-01 16 70261044 70261150 107 - 2.784 2.802 0.061
ENSG00000090861 E033 355.0934971 1.121663e-03 7.735436e-01 8.808259e-01 16 70261151 70261157 7 - 2.492 2.501 0.029
ENSG00000090861 E034 1.0646060 7.399915e-01 3.474898e-01   16 70261158 70261413 256 - 0.000 0.351 11.543
ENSG00000090861 E035 455.5020513 3.897877e-04 8.597387e-01 9.302154e-01 16 70262346 70262366 21 - 2.603 2.608 0.017
ENSG00000090861 E036 425.3657241 6.446511e-04 6.721443e-01 8.176733e-01 16 70262367 70262372 6 - 2.570 2.580 0.034
ENSG00000090861 E037 769.5388545 1.041500e-04 4.939866e-01 6.966923e-01 16 70262373 70262472 100 - 2.839 2.830 -0.028
ENSG00000090861 E038 398.6823506 1.499531e-04 4.942218e-02 1.782185e-01 16 70262473 70262484 12 - 2.575 2.537 -0.126
ENSG00000090861 E039 487.4505467 1.418430e-04 2.702968e-01 5.102671e-01 16 70262485 70262524 40 - 2.648 2.630 -0.062
ENSG00000090861 E040 0.6730019 1.938749e-02 3.297067e-01   16 70264804 70264957 154 - 0.315 0.144 -1.440
ENSG00000090861 E041 804.4553032 1.004219e-04 6.769352e-01 8.207793e-01 16 70264958 70265102 145 - 2.855 2.851 -0.014
ENSG00000090861 E042 2.7843158 7.002385e-02 6.483745e-01 8.024319e-01 16 70265103 70265515 413 - 0.492 0.571 0.370
ENSG00000090861 E043 748.3189700 9.715436e-05 1.901014e-01 4.170629e-01 16 70265538 70265662 125 - 2.834 2.816 -0.059
ENSG00000090861 E044 874.9221380 1.932505e-04 6.947999e-02 2.237301e-01 16 70267659 70267809 151 - 2.906 2.882 -0.080
ENSG00000090861 E045 681.3487513 1.437913e-04 6.194464e-01 7.834806e-01 16 70268271 70268379 109 - 2.783 2.777 -0.020
ENSG00000090861 E046 2.5290465 9.139984e-03 8.761380e-01 9.392889e-01 16 70268380 70268395 16 - 0.495 0.525 0.143
ENSG00000090861 E047 775.8341315 1.433761e-04 1.006212e-02 5.842779e-02 16 70269618 70269763 146 - 2.862 2.825 -0.123
ENSG00000090861 E048 3.7695325 1.049408e-01 6.561983e-01 8.074733e-01 16 70269764 70269834 71 - 0.559 0.648 0.394
ENSG00000090861 E049 731.1155339 1.183708e-04 7.546909e-05 1.181887e-03 16 70270196 70270340 145 - 2.852 2.795 -0.191
ENSG00000090861 E050 585.7932707 8.548695e-04 1.087237e-01 2.969586e-01 16 70271781 70271888 108 - 2.736 2.704 -0.106
ENSG00000090861 E051 494.2352261 2.060167e-04 6.702095e-03 4.320742e-02 16 70271889 70271972 84 - 2.675 2.626 -0.161
ENSG00000090861 E052 603.0423941 4.124848e-04 1.289284e-04 1.847524e-03 16 70276486 70276631 146 - 2.774 2.705 -0.229
ENSG00000090861 E053 787.2573547 1.564339e-04 8.175939e-09 3.916678e-07 16 70276966 70277154 189 - 2.901 2.817 -0.278
ENSG00000090861 E054 0.5955263 2.055642e-02 9.647834e-01   16 70278900 70279045 146 - 0.185 0.200 0.142
ENSG00000090861 E055 0.5061644 4.879057e-01 8.222651e-01   16 70279046 70279340 295 - 0.185 0.146 -0.415
ENSG00000090861 E056 1.1669748 3.740466e-01 5.943641e-01   16 70279409 70279653 245 - 0.406 0.259 -0.923
ENSG00000090861 E057 603.7450177 1.461704e-04 1.603216e-06 4.295723e-05 16 70282620 70282784 165 - 2.784 2.706 -0.258
ENSG00000090861 E058 0.1723744 4.909970e-02 1.000000e+00   16 70289216 70289317 102 - 0.000 0.078 9.762
ENSG00000090861 E059 228.0798184 2.416126e-04 8.172798e-01 9.065661e-01 16 70289421 70289482 62 - 2.311 2.306 -0.016
ENSG00000090861 E060 83.3842082 5.723366e-04 7.847027e-01 8.873567e-01 16 70289483 70289529 47 - 1.883 1.873 -0.035
ENSG00000090861 E061 6.9275718 9.124295e-02 8.462450e-01 9.228686e-01 16 70289530 70289580 51 - 0.800 0.887 0.337
ENSG00000090861 E062 0.4644705 2.176816e-02 3.851870e-01   16 70289593 70289707 115 - 0.000 0.201 11.452