ENSG00000082898

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000401558 ENSG00000082898 HEK293_OSMI2_6hA HEK293_TMG_6hB XPO1 protein_coding protein_coding 83.78236 24.75954 166.8617 3.748726 3.758704 2.7521 14.9785434 5.248580 27.301021 0.4544593 1.9237186 2.3767382 0.16275417 0.21713333 0.16380000 -0.05333333 4.769627e-01 2.154949e-38 FALSE TRUE
ENST00000406957 ENSG00000082898 HEK293_OSMI2_6hA HEK293_TMG_6hB XPO1 protein_coding protein_coding 83.78236 24.75954 166.8617 3.748726 3.758704 2.7521 19.9571645 0.000000 44.694843 0.0000000 3.3430651 12.1262154 0.13799167 0.00000000 0.26720000 0.26720000 2.154949e-38 2.154949e-38 FALSE TRUE
ENST00000676789 ENSG00000082898 HEK293_OSMI2_6hA HEK293_TMG_6hB XPO1 protein_coding protein_coding 83.78236 24.75954 166.8617 3.748726 3.758704 2.7521 14.4240021 2.935719 32.915273 1.8670421 1.9026086 3.4825037 0.12008750 0.11686667 0.19760000 0.08073333 8.154926e-01 2.154949e-38 FALSE TRUE
ENST00000677417 ENSG00000082898 HEK293_OSMI2_6hA HEK293_TMG_6hB XPO1 protein_coding protein_coding 83.78236 24.75954 166.8617 3.748726 3.758704 2.7521 0.8639461 2.558583 0.000000 1.6070472 0.0000000 -8.0048290 0.03034167 0.09273333 0.00000000 -0.09273333 1.155604e-01 2.154949e-38 FALSE TRUE
ENST00000677422 ENSG00000082898 HEK293_OSMI2_6hA HEK293_TMG_6hB XPO1 protein_coding nonsense_mediated_decay 83.78236 24.75954 166.8617 3.748726 3.758704 2.7521 2.6941420 1.778364 4.650923 0.1519494 0.9922174 1.3819757 0.06194167 0.07483333 0.02803333 -0.04680000 1.046062e-01 2.154949e-38 FALSE TRUE
ENST00000677803 ENSG00000082898 HEK293_OSMI2_6hA HEK293_TMG_6hB XPO1 protein_coding protein_coding 83.78236 24.75954 166.8617 3.748726 3.758704 2.7521 1.8874226 0.000000 0.000000 0.0000000 0.0000000 0.0000000 0.08713333 0.00000000 0.00000000 0.00000000   2.154949e-38 FALSE TRUE
ENST00000678741 ENSG00000082898 HEK293_OSMI2_6hA HEK293_TMG_6hB XPO1 protein_coding nonsense_mediated_decay 83.78236 24.75954 166.8617 3.748726 3.758704 2.7521 8.9146834 0.000000 20.906543 0.0000000 1.4625978 11.0304287 0.06321667 0.00000000 0.12530000 0.12530000 9.297714e-27 2.154949e-38 TRUE TRUE
MSTRG.18496.35 ENSG00000082898 HEK293_OSMI2_6hA HEK293_TMG_6hB XPO1 protein_coding   83.78236 24.75954 166.8617 3.748726 3.758704 2.7521 4.0329557 5.392933 6.466700 1.9237605 0.5473574 0.2615161 0.08645000 0.20266667 0.03893333 -0.16373333 1.283776e-03 2.154949e-38 FALSE TRUE
MSTRG.18496.38 ENSG00000082898 HEK293_OSMI2_6hA HEK293_TMG_6hB XPO1 protein_coding   83.78236 24.75954 166.8617 3.748726 3.758704 2.7521 0.5041930 1.609354 0.000000 1.6093539 0.0000000 -7.3392745 0.01819167 0.06016667 0.00000000 -0.06016667 7.305201e-01 2.154949e-38 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000082898 E001 1.9084776 0.1987578028 8.294046e-01 9.134607e-01 2 61476032 61477688 1657 - 0.354 0.407 0.301
ENSG00000082898 E002 6.8997733 0.0770456356 5.020746e-01 7.022511e-01 2 61477689 61477848 160 - 0.784 0.688 -0.389
ENSG00000082898 E003 6.2164099 0.0098406540 8.930867e-01 9.481933e-01 2 61477849 61477933 85 - 0.730 0.747 0.066
ENSG00000082898 E004 3.8215060 0.0063168351 5.005201e-02 1.798101e-01 2 61477934 61477941 8 - 0.503 0.851 1.482
ENSG00000082898 E005 4.7173946 0.0078620761 6.290397e-02 2.092400e-01 2 61477942 61477946 5 - 0.572 0.896 1.330
ENSG00000082898 E006 5.5743497 0.0365810867 2.158301e-02 1.012400e-01 2 61477947 61477953 7 - 0.603 1.008 1.612
ENSG00000082898 E007 9.7735058 0.0982208061 1.147749e-02 6.431067e-02 2 61477954 61477968 15 - 0.786 1.282 1.828
ENSG00000082898 E008 12.0955321 0.0301852370 3.003662e-03 2.341907e-02 2 61477969 61477969 1 - 0.892 1.318 1.544
ENSG00000082898 E009 13.7210937 0.0108495260 1.345085e-03 1.249870e-02 2 61477970 61477979 10 - 0.956 1.348 1.407
ENSG00000082898 E010 32.8446272 0.0011463670 3.809973e-03 2.807885e-02 2 61477980 61477992 13 - 1.345 1.601 0.878
ENSG00000082898 E011 826.5707959 0.0037664379 3.044476e-06 7.525794e-05 2 61477993 61478337 345 - 2.740 2.938 0.657
ENSG00000082898 E012 927.0385365 0.0033027325 4.669444e-07 1.459023e-05 2 61478338 61478699 362 - 2.791 2.986 0.651
ENSG00000082898 E013 864.4295919 0.0004183032 7.442885e-14 9.501883e-12 2 61478700 61478966 267 - 2.765 2.942 0.588
ENSG00000082898 E014 540.1683304 0.0003049239 9.104217e-06 1.934324e-04 2 61481185 61481281 97 - 2.570 2.707 0.457
ENSG00000082898 E015 13.9295536 0.0199434575 1.036464e-01 2.882805e-01 2 61481282 61482086 805 - 0.999 1.232 0.838
ENSG00000082898 E016 10.5141250 0.1341474281 3.399973e-02 1.388633e-01 2 61482087 61482379 293 - 0.822 1.299 1.746
ENSG00000082898 E017 422.1089284 0.0092343252 4.449863e-03 3.166251e-02 2 61482380 61482426 47 - 2.453 2.637 0.613
ENSG00000082898 E018 483.2228961 0.0548699566 5.039810e-02 1.806115e-01 2 61482427 61482539 113 - 2.498 2.739 0.801
ENSG00000082898 E019 1.8098045 0.0121989077 2.751641e-02 1.198308e-01 2 61482540 61482624 85 - 0.260 0.683 2.222
ENSG00000082898 E020 2.2207078 0.9025430723 6.952781e-01 8.324348e-01 2 61482625 61482817 193 - 0.339 0.696 1.748
ENSG00000082898 E021 3.1927707 0.2583927521 1.308149e-01 3.330591e-01 2 61482818 61482956 139 - 0.436 0.813 1.670
ENSG00000082898 E022 557.8122197 1.9486148344 4.890894e-01 6.934092e-01 2 61482957 61483091 135 - 2.543 2.851 1.026
ENSG00000082898 E023 1.7223657 0.4319193629 8.400548e-01 9.194361e-01 2 61483092 61483122 31 - 0.343 0.407 0.369
ENSG00000082898 E024 574.6069979 1.9608420741 5.104157e-01 7.082847e-01 2 61483937 61484105 169 - 2.564 2.841 0.925
ENSG00000082898 E025 16.9914670 0.0465478963 1.619971e-01 3.797163e-01 2 61484106 61485767 1662 - 1.078 1.304 0.803
ENSG00000082898 E026 665.3871658 0.0187489464 5.043570e-02 1.806840e-01 2 61485768 61485962 195 - 2.653 2.822 0.561
ENSG00000082898 E027 5.0386462 0.0105643261 7.457849e-01 8.642023e-01 2 61485963 61487541 1579 - 0.658 0.746 0.367
ENSG00000082898 E028 400.4236691 0.0005146910 5.715632e-02 1.963677e-01 2 61488165 61488213 49 - 2.450 2.544 0.314
ENSG00000082898 E029 415.8672819 0.0002426151 2.939815e-01 5.346185e-01 2 61488214 61488271 58 - 2.470 2.542 0.239
ENSG00000082898 E030 250.9627831 0.0017187389 5.496466e-01 7.360423e-01 2 61488588 61488590 3 - 2.251 2.321 0.233
ENSG00000082898 E031 710.3083081 0.0009015969 4.042069e-01 6.316961e-01 2 61488591 61488771 181 - 2.702 2.769 0.221
ENSG00000082898 E032 1.3496583 0.0161866284 6.733206e-01   2 61488772 61488932 161 - 0.291 0.402 0.672
ENSG00000082898 E033 592.8343517 0.0025171487 8.492709e-01 9.245292e-01 2 61490642 61490776 135 - 2.626 2.678 0.174
ENSG00000082898 E034 694.2945805 0.0051444085 6.718106e-01 8.174606e-01 2 61492035 61492196 162 - 2.693 2.754 0.203
ENSG00000082898 E035 208.7414555 0.0092256441 3.451327e-01 5.827039e-01 2 61492197 61492198 2 - 2.167 2.267 0.336
ENSG00000082898 E036 1.9638458 0.0102241601 9.920598e-01 9.977444e-01 2 61492199 61492250 52 - 0.374 0.403 0.161
ENSG00000082898 E037 685.2678490 0.0026397841 9.599571e-01 9.818470e-01 2 61492325 61492481 157 - 2.691 2.736 0.150
ENSG00000082898 E038 839.8609855 0.0032007395 4.466629e-02 1.667736e-01 2 61492567 61492748 182 - 2.788 2.770 -0.061
ENSG00000082898 E039 2.9511208 0.1193297086 6.507644e-01 8.040362e-01 2 61492749 61492914 166 - 0.504 0.405 -0.509
ENSG00000082898 E040 922.5523694 0.0036575844 1.345849e-04 1.915650e-03 2 61492915 61493053 139 - 2.838 2.757 -0.268
ENSG00000082898 E041 12.7658328 0.2608704200 2.580320e-01 4.967468e-01 2 61493054 61493637 584 - 1.038 0.807 -0.873
ENSG00000082898 E042 8.0000808 0.3080942715 4.881750e-01 6.927702e-01 2 61493638 61493893 256 - 0.759 1.084 1.233
ENSG00000082898 E043 892.3303740 0.0019043215 2.073173e-03 1.755622e-02 2 61493894 61494091 198 - 2.817 2.781 -0.120
ENSG00000082898 E044 9.6881972 0.0966122219 4.688698e-02 1.722774e-01 2 61494092 61495454 1363 - 0.810 1.215 1.499
ENSG00000082898 E045 753.0167089 0.0008449704 2.988409e-04 3.717680e-03 2 61495455 61495613 159 - 2.743 2.707 -0.119
ENSG00000082898 E046 620.7388597 0.0025649677 5.137953e-03 3.534278e-02 2 61496879 61496960 82 - 2.660 2.615 -0.149
ENSG00000082898 E047 503.4209878 0.0035736832 9.602455e-03 5.640085e-02 2 61496961 61497007 47 - 2.570 2.520 -0.167
ENSG00000082898 E048 7.3568618 0.1053402706 6.686661e-01 8.153227e-01 2 61497008 61498672 1665 - 0.807 0.745 -0.248
ENSG00000082898 E049 458.3051556 0.0029795642 6.037500e-03 3.990916e-02 2 61498673 61498739 67 - 2.530 2.478 -0.172
ENSG00000082898 E050 352.1166413 0.0008562678 4.188022e-02 1.596389e-01 2 61498740 61498792 53 - 2.411 2.398 -0.042
ENSG00000082898 E051 28.9185848 0.0414763277 4.934006e-01 6.962141e-01 2 61498793 61498864 72 - 1.318 1.436 0.410
ENSG00000082898 E052 328.0381727 0.0001686506 1.325863e-04 1.892914e-03 2 61498865 61498913 49 - 2.388 2.328 -0.199
ENSG00000082898 E053 699.7587406 0.0016667749 4.129670e-12 3.823953e-10 2 61499713 61499894 182 - 2.726 2.578 -0.494
ENSG00000082898 E054 5.7423627 0.0883103375 2.814402e-01 5.217456e-01 2 61499895 61500568 674 - 0.663 0.896 0.929
ENSG00000082898 E055 274.3029105 0.0032460985 5.153199e-07 1.589126e-05 2 61501996 61502005 10 - 2.323 2.157 -0.557
ENSG00000082898 E056 384.0304831 0.0017667222 1.320017e-07 4.771589e-06 2 61502006 61502040 35 - 2.464 2.334 -0.433
ENSG00000082898 E057 3.1676604 0.0161178835 6.888041e-01 8.283329e-01 2 61502146 61502248 103 - 0.503 0.607 0.483
ENSG00000082898 E058 440.6220841 0.0001654478 2.948484e-11 2.337630e-09 2 61502249 61502289 41 - 2.523 2.405 -0.395
ENSG00000082898 E059 328.9910680 0.0001501549 3.946294e-05 6.802391e-04 2 61502290 61502310 21 - 2.391 2.323 -0.225
ENSG00000082898 E060 2.0865317 0.0117826151 9.034856e-01 9.536402e-01 2 61502311 61502608 298 - 0.398 0.402 0.020
ENSG00000082898 E061 1.4417104 0.0130526641 5.461380e-02 1.904693e-01 2 61510623 61510929 307 - 0.226 0.607 2.158
ENSG00000082898 E062 0.5283420 0.4326001421 4.680541e-01   2 61514062 61514200 139 - 0.107 0.248 1.460
ENSG00000082898 E063 0.3559677 0.5683656284 1.000000e+00   2 61514201 61514982 782 - 0.108 0.001 -7.445
ENSG00000082898 E064 0.1614157 0.0340126615 1.000000e+00   2 61520391 61520475 85 - 0.056 0.000 -7.077
ENSG00000082898 E065 497.8156687 0.0002020731 2.924859e-15 4.616248e-13 2 61522611 61522683 73 - 2.579 2.436 -0.475
ENSG00000082898 E066 24.3918012 0.2251803670 9.025446e-01 9.531276e-01 2 61522684 61523690 1007 - 1.245 1.380 0.472
ENSG00000082898 E067 4.2369736 0.0452430603 2.353283e-01 4.712612e-01 2 61525270 61525333 64 - 0.569 0.803 0.987
ENSG00000082898 E068 2.1064804 0.0099489310 9.103805e-01 9.573509e-01 2 61525334 61525491 158 - 0.398 0.402 0.024
ENSG00000082898 E069 4.4273550 0.1386849229 5.532455e-01 7.385387e-01 2 61525492 61525559 68 - 0.639 0.513 -0.571
ENSG00000082898 E070 10.2459742 0.1832829310 6.049775e-01 7.735097e-01 2 61525560 61526066 507 - 0.901 1.034 0.496
ENSG00000082898 E071 2.5317185 0.4270195838 3.615465e-01 5.969404e-01 2 61526067 61526150 84 - 0.385 0.685 1.430
ENSG00000082898 E072 3.8638354 0.0067887665 2.434801e-01 4.804966e-01 2 61526151 61526419 269 - 0.602 0.402 -0.978
ENSG00000082898 E073 419.4061063 0.0001510479 9.527704e-10 5.589027e-08 2 61526420 61526461 42 - 2.501 2.393 -0.359
ENSG00000082898 E074 396.4908357 0.0001833431 3.285608e-10 2.088999e-08 2 61526462 61526505 44 - 2.478 2.360 -0.394
ENSG00000082898 E075 288.1298352 0.0001753399 2.766843e-11 2.202877e-09 2 61526506 61526521 16 - 2.345 2.184 -0.538
ENSG00000082898 E076 1.2563522 0.0133875477 7.628407e-01   2 61526522 61526523 2 - 0.291 0.246 -0.328
ENSG00000082898 E077 0.4764247 0.0213031887 4.483561e-01   2 61529066 61529159 94 - 0.105 0.246 1.483
ENSG00000082898 E078 482.9237542 0.0001258830 1.718436e-11 1.422173e-09 2 61533772 61533903 132 - 2.562 2.451 -0.372
ENSG00000082898 E079 29.5095150 0.0513141884 9.703238e-01 9.870112e-01 2 61533904 61534422 519 - 1.342 1.371 0.099
ENSG00000082898 E080 13.5530012 0.0065456615 5.817161e-01 7.582164e-01 2 61534423 61534518 96 - 1.035 1.007 -0.105
ENSG00000082898 E081 7.8948682 0.0041412368 4.056643e-01 6.327982e-01 2 61534519 61534557 39 - 0.837 0.746 -0.359
ENSG00000082898 E082 16.7744662 0.0176076584 4.223744e-01 6.454154e-01 2 61534558 61534654 97 - 1.093 1.229 0.486
ENSG00000082898 E083 10.8082822 0.0343203929 2.234959e-01 4.575783e-01 2 61534655 61534678 24 - 0.904 1.118 0.786
ENSG00000082898 E084 101.0258992 0.1199979348 9.316919e-01 9.679539e-01 2 61534679 61536201 1523 - 1.861 1.917 0.188
ENSG00000082898 E085 38.2405285 0.2145462561 8.794677e-01 9.410269e-01 2 61536202 61536588 387 - 1.424 1.604 0.619
ENSG00000082898 E086 18.9365322 0.2205739557 8.684762e-01 9.350910e-01 2 61536710 61536869 160 - 1.155 1.234 0.279
ENSG00000082898 E087 20.0896494 0.0528830267 6.132940e-01 7.791491e-01 2 61536870 61537018 149 - 1.173 1.286 0.398
ENSG00000082898 E088 11.9975565 0.0109127161 2.795786e-01 5.197013e-01 2 61537019 61537117 99 - 0.950 1.122 0.627
ENSG00000082898 E089 266.4756566 0.0035886950 6.302366e-03 4.121178e-02 2 61537562 61537587 26 - 2.298 2.224 -0.245
ENSG00000082898 E090 323.3666324 0.0009196880 3.415597e-06 8.307747e-05 2 61537588 61537668 81 - 2.386 2.285 -0.337
ENSG00000082898 E091 209.5356865 0.0014065594 7.924471e-06 1.715871e-04 2 61537669 61537743 75 - 2.202 2.070 -0.442
ENSG00000082898 E092 206.6900863 0.0116262120 2.058528e-01 4.368780e-01 2 61537744 61538069 326 - 2.185 2.141 -0.147
ENSG00000082898 E093 80.1648112 0.0005939665 1.807643e-01 4.049779e-01 2 61538070 61538137 68 - 1.775 1.747 -0.094
ENSG00000082898 E094 89.2308063 0.0005174730 1.201519e-01 3.160759e-01 2 61538138 61538191 54 - 1.822 1.787 -0.119
ENSG00000082898 E095 94.7088488 0.0006888704 2.152067e-01 4.477927e-01 2 61538192 61538356 165 - 1.845 1.828 -0.057
ENSG00000082898 E096 12.3915714 0.0050783241 5.847713e-01 7.601857e-01 2 61538492 61538741 250 - 1.001 0.973 -0.104