ENSG00000074755

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000381638 ENSG00000074755 HEK293_OSMI2_6hA HEK293_TMG_6hB ZZEF1 protein_coding protein_coding 10.45635 15.1989 9.101538 0.5941135 0.3887968 -0.7391493 6.0939746 10.1407936 3.095460 1.1265375 0.03434672 -1.7087134 0.5700042 0.6633000 0.34130000 -0.32200000 0.001002932 0.00014728 FALSE TRUE
ENST00000572699 ENSG00000074755 HEK293_OSMI2_6hA HEK293_TMG_6hB ZZEF1 protein_coding nonsense_mediated_decay 10.45635 15.1989 9.101538 0.5941135 0.3887968 -0.7391493 0.3021679 0.1177771 0.663161 0.1177771 0.12650468 2.3973225 0.0309000 0.0084000 0.07246667 0.06406667 0.140036188 0.00014728 TRUE FALSE
MSTRG.13446.2 ENSG00000074755 HEK293_OSMI2_6hA HEK293_TMG_6hB ZZEF1 protein_coding   10.45635 15.1989 9.101538 0.5941135 0.3887968 -0.7391493 1.6393181 1.7829196 2.962300 0.2223808 0.59447625 0.7292689 0.1675042 0.1185667 0.32160000 0.20303333 0.029414321 0.00014728 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000074755 E001 158.4052916 0.5918973502 7.850793e-02 2.418121e-01 17 4004445 4004974 530 - 1.721 2.296 1.931
ENSG00000074755 E002 614.9115624 1.4816019120 3.560181e-01 5.925271e-01 17 4004975 4006504 1530 - 2.467 2.858 1.301
ENSG00000074755 E003 74.1323166 0.4720837942 1.751601e-01 3.973797e-01 17 4006505 4006561 57 - 1.570 1.941 1.256
ENSG00000074755 E004 78.9436701 0.4606361872 1.322267e-01 3.353113e-01 17 4006562 4006623 62 - 1.549 1.977 1.449
ENSG00000074755 E005 97.1832286 0.5605221007 1.804045e-01 4.045214e-01 17 4006624 4006692 69 - 1.665 2.061 1.335
ENSG00000074755 E006 211.2030405 1.1589132767 4.018503e-01 6.299122e-01 17 4006693 4006970 278 - 2.083 2.377 0.984
ENSG00000074755 E007 22.0762296 0.3374935745 5.625326e-01 7.450668e-01 17 4008260 4008882 623 - 1.230 1.383 0.532
ENSG00000074755 E008 99.4849578 0.6265313903 2.772836e-01 5.173082e-01 17 4008883 4008954 72 - 1.751 2.055 1.020
ENSG00000074755 E009 3.6455674 0.2012294518 1.859133e-01 4.117364e-01 17 4008955 4009603 649 - 0.369 0.745 1.767
ENSG00000074755 E010 116.5025761 0.6762833847 2.782523e-01 5.183765e-01 17 4009604 4009757 154 - 1.812 2.124 1.047
ENSG00000074755 E011 115.1828097 0.0007076813 8.865195e-05 1.351085e-03 17 4013449 4013614 166 - 1.875 2.106 0.774
ENSG00000074755 E012 109.1546315 0.0004640927 1.479652e-02 7.731507e-02 17 4014090 4014188 99 - 1.893 2.065 0.577
ENSG00000074755 E013 70.1008004 0.0005656572 3.254455e-03 2.492925e-02 17 4014347 4014377 31 - 1.671 1.890 0.741
ENSG00000074755 E014 134.6481682 0.0004809813 9.880309e-03 5.761636e-02 17 4014378 4014515 138 - 1.986 2.154 0.563
ENSG00000074755 E015 127.0593519 0.0118434979 2.878736e-01 5.286570e-01 17 4016323 4016466 144 - 1.974 2.124 0.504
ENSG00000074755 E016 5.6402912 0.0354695794 3.349181e-02 1.374533e-01 17 4016467 4016632 166 - 0.960 0.709 -0.982
ENSG00000074755 E017 3.4998194 0.0071007145 2.752320e-01 5.152651e-01 17 4016633 4016774 142 - 0.706 0.600 -0.456
ENSG00000074755 E018 8.2732123 0.2014716582 2.095742e-01 4.413890e-01 17 4016775 4017370 596 - 1.026 0.893 -0.497
ENSG00000074755 E019 152.7891987 0.0138086690 6.973396e-02 2.242587e-01 17 4017371 4017647 277 - 2.015 2.217 0.677
ENSG00000074755 E020 80.9760212 0.0071750386 2.197127e-02 1.024893e-01 17 4017648 4017730 83 - 1.726 1.946 0.742
ENSG00000074755 E021 103.5107727 0.0031366004 4.296409e-01 6.507632e-01 17 4017836 4017971 136 - 1.910 2.026 0.389
ENSG00000074755 E022 91.2223585 0.0005037303 5.908426e-01 7.642785e-01 17 4019669 4019769 101 - 1.870 1.970 0.336
ENSG00000074755 E023 2.6108415 0.0089553272 2.421306e-01 4.789459e-01 17 4019770 4020012 243 - 0.621 0.486 -0.624
ENSG00000074755 E024 126.6310494 0.0045831939 6.708646e-01 8.169066e-01 17 4021129 4021320 192 - 2.038 2.101 0.210
ENSG00000074755 E025 0.5953387 0.0450837631 2.102771e-01   17 4022416 4022416 1 - 0.000 0.281 14.918
ENSG00000074755 E026 4.4734527 0.0060515879 6.267206e-02 2.087426e-01 17 4022417 4022708 292 - 0.450 0.812 1.596
ENSG00000074755 E027 101.1686662 0.0051917755 9.351146e-01 9.697712e-01 17 4022709 4022828 120 - 1.930 2.008 0.263
ENSG00000074755 E028 123.2234814 0.0003612479 3.834850e-01 6.151487e-01 17 4024919 4025118 200 - 1.992 2.101 0.364
ENSG00000074755 E029 105.2142621 0.0004068772 1.540042e-01 3.680321e-01 17 4032126 4032258 133 - 1.908 2.041 0.445
ENSG00000074755 E030 107.9024978 0.0125242574 1.281556e-01 3.288735e-01 17 4032828 4033002 175 - 1.877 2.063 0.623
ENSG00000074755 E031 4.0970110 0.0068074879 1.805162e-01 4.046382e-01 17 4033003 4033359 357 - 0.778 0.647 -0.542
ENSG00000074755 E032 6.5911920 0.2319306877 2.797323e-01 5.198277e-01 17 4033531 4034014 484 - 0.921 0.814 -0.409
ENSG00000074755 E033 135.8356965 0.0003867450 9.039248e-03 5.400620e-02 17 4034015 4034292 278 - 1.992 2.160 0.563
ENSG00000074755 E034 90.1743695 0.0005219576 8.433007e-01 9.212846e-01 17 4042429 4042568 140 - 1.891 1.960 0.233
ENSG00000074755 E035 98.5267219 0.0028981700 6.397474e-01 7.967601e-01 17 4044224 4044374 151 - 1.905 2.004 0.334
ENSG00000074755 E036 87.1900048 0.0004587323 5.061346e-01 7.050444e-01 17 4049708 4049859 152 - 1.886 1.936 0.168
ENSG00000074755 E037 119.1208626 0.0009117764 2.508584e-01 4.889108e-01 17 4050781 4051043 263 - 2.029 2.064 0.118
ENSG00000074755 E038 101.3909696 0.0007107642 6.575696e-01 8.083860e-01 17 4051971 4052136 166 - 1.941 2.002 0.204
ENSG00000074755 E039 77.9997823 0.0084388125 2.126292e-01 4.448197e-01 17 4054057 4054195 139 - 1.866 1.871 0.017
ENSG00000074755 E040 80.2383725 0.0076766619 9.087538e-02 2.653039e-01 17 4056216 4056345 130 - 1.894 1.877 -0.057
ENSG00000074755 E041 92.7750003 0.0246152092 1.288926e-01 3.300502e-01 17 4057994 4058155 162 - 1.973 1.930 -0.145
ENSG00000074755 E042 71.8416019 0.0092405189 1.338454e-01 3.378216e-01 17 4059171 4059290 120 - 1.844 1.830 -0.046
ENSG00000074755 E043 72.3214058 0.0007103107 3.164483e-02 1.321795e-01 17 4062753 4062917 165 - 1.854 1.836 -0.061
ENSG00000074755 E044 111.0074990 0.0003922282 1.575837e-03 1.415045e-02 17 4064361 4064798 438 - 2.049 2.013 -0.118
ENSG00000074755 E045 42.2882297 0.0008688407 1.556004e-03 1.400940e-02 17 4064799 4064829 31 - 1.675 1.573 -0.347
ENSG00000074755 E046 58.1769884 0.0019431647 2.716887e-04 3.444939e-03 17 4066447 4066536 90 - 1.816 1.706 -0.373
ENSG00000074755 E047 28.1430700 0.0014414393 1.568286e-02 8.066971e-02 17 4066537 4066540 4 - 1.497 1.407 -0.312
ENSG00000074755 E048 52.0072010 0.0040740039 2.082191e-02 9.873894e-02 17 4067163 4067242 80 - 1.740 1.681 -0.200
ENSG00000074755 E049 47.5666698 0.0011850369 6.801761e-03 4.370064e-02 17 4070684 4070778 95 - 1.711 1.640 -0.242
ENSG00000074755 E050 35.4433175 0.0010602105 2.648581e-03 2.125963e-02 17 4070779 4070810 32 - 1.608 1.501 -0.365
ENSG00000074755 E051 55.2035357 0.0070684733 4.400367e-02 1.650981e-01 17 4070811 4070924 114 - 1.753 1.704 -0.164
ENSG00000074755 E052 4.5050340 0.0058148432 9.078317e-04 9.159381e-03 17 4071339 4071446 108 - 0.941 0.547 -1.616
ENSG00000074755 E053 54.3079598 0.0029481561 2.336736e-02 1.071012e-01 17 4072608 4072756 149 - 1.745 1.696 -0.165
ENSG00000074755 E054 0.0000000       17 4072757 4072827 71 -      
ENSG00000074755 E055 69.3411616 0.0066260170 1.907590e-03 1.645607e-02 17 4074150 4074351 202 - 1.884 1.783 -0.342
ENSG00000074755 E056 60.4516975 0.0010305186 1.804602e-05 3.500433e-04 17 4075097 4075178 82 - 1.843 1.713 -0.438
ENSG00000074755 E057 0.0000000       17 4075179 4075180 2 -      
ENSG00000074755 E058 79.0370345 0.0006301133 3.165511e-06 7.781943e-05 17 4075263 4075429 167 - 1.954 1.837 -0.394
ENSG00000074755 E059 0.1723744 0.0349474676 1.000000e+00   17 4075952 4076636 685 - 0.000 0.090 12.927
ENSG00000074755 E060 59.7494189 0.0032796979 1.113653e-04 1.634888e-03 17 4076637 4076759 123 - 1.843 1.715 -0.431
ENSG00000074755 E061 55.6625813 0.0008315449 2.897763e-07 9.555471e-06 17 4076868 4076989 122 - 1.837 1.662 -0.592
ENSG00000074755 E062 55.9136781 0.0013900978 3.264721e-05 5.798816e-04 17 4077883 4078042 160 - 1.813 1.679 -0.454
ENSG00000074755 E063 47.1674210 0.0019435943 3.287957e-04 4.024873e-03 17 4081376 4081490 115 - 1.734 1.609 -0.422
ENSG00000074755 E064 42.7372395 0.0064683547 9.738188e-04 9.707492e-03 17 4082437 4082504 68 - 1.703 1.559 -0.491
ENSG00000074755 E065 28.6037362 0.0015010681 4.480333e-04 5.205334e-03 17 4082505 4082507 3 - 1.545 1.383 -0.557
ENSG00000074755 E066 58.2495264 0.0025816076 9.613840e-06 2.026125e-04 17 4085670 4085803 134 - 1.843 1.689 -0.518
ENSG00000074755 E067 44.1015998 0.0248040406 7.546571e-02 2.357885e-01 17 4086486 4086655 170 - 1.681 1.597 -0.286
ENSG00000074755 E068 27.5387656 0.0162898029 3.933660e-01 6.230353e-01 17 4087434 4087534 101 - 1.430 1.432 0.009
ENSG00000074755 E069 53.2622667 0.0205505579 1.420527e-02 7.514984e-02 17 4088678 4088893 216 - 1.792 1.669 -0.419
ENSG00000074755 E070 47.1119758 0.0012559825 7.360559e-08 2.822927e-06 17 4090719 4090830 112 - 1.788 1.578 -0.713
ENSG00000074755 E071 57.7821455 0.0029466139 2.150405e-08 9.366254e-07 17 4095831 4095979 149 - 1.876 1.658 -0.736
ENSG00000074755 E072 43.1264966 0.0061040111 2.519560e-06 6.386321e-05 17 4096609 4096700 92 - 1.755 1.529 -0.769
ENSG00000074755 E073 50.6501932 0.0007549200 1.375978e-11 1.156795e-09 17 4102317 4102415 99 - 1.845 1.581 -0.895
ENSG00000074755 E074 58.6267235 0.0034513076 1.902524e-09 1.052075e-07 17 4104633 4104811 179 - 1.898 1.657 -0.816
ENSG00000074755 E075 42.6036798 0.0018382335 1.809873e-03 1.576519e-02 17 4105693 4105809 117 - 1.680 1.576 -0.353
ENSG00000074755 E076 50.9670455 0.0074104209 9.345224e-03 5.528557e-02 17 4109653 4109863 211 - 1.749 1.660 -0.299
ENSG00000074755 E077 46.4329086 0.0342152842 7.358677e-04 7.747985e-03 17 4112609 4112808 200 - 1.807 1.547 -0.882
ENSG00000074755 E078 53.9376102 0.0217381886 1.424442e-05 2.847927e-04 17 4114299 4114470 172 - 1.886 1.602 -0.960
ENSG00000074755 E079 58.0899439 0.0097553797 1.337519e-09 7.622200e-08 17 4116972 4117166 195 - 1.934 1.617 -1.073
ENSG00000074755 E080 35.7586949 0.0071923416 3.015729e-07 9.898342e-06 17 4123907 4124051 145 - 1.711 1.434 -0.948
ENSG00000074755 E081 32.0858183 0.0133792260 4.010547e-02 1.549757e-01 17 4142542 4143030 489 - 1.552 1.463 -0.306
ENSG00000074755 E082 3.1143045 0.3319385091 5.576763e-01 7.416107e-01 17 4143549 4143692 144 - 0.656 0.580 -0.334