ENSG00000071894

Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000526271 ENSG00000071894 HEK293_OSMI2_6hA HEK293_TMG_6hB CPSF1 protein_coding retained_intron 107.0053 138.9734 90.06732 14.87571 4.004816 -0.6256772 5.854785 6.731875 5.977846 0.9272389 0.5370193 -0.171112874 0.05437917 0.04806667 0.06633333 0.01826667 0.3448920 0.0001703542 FALSE  
ENST00000527827 ENSG00000071894 HEK293_OSMI2_6hA HEK293_TMG_6hB CPSF1 protein_coding retained_intron 107.0053 138.9734 90.06732 14.87571 4.004816 -0.6256772 15.417791 17.253019 16.001784 6.7181821 0.8504219 -0.108550719 0.14621667 0.11790000 0.17760000 0.05970000 0.5987909 0.0001703542 FALSE  
ENST00000529288 ENSG00000071894 HEK293_OSMI2_6hA HEK293_TMG_6hB CPSF1 protein_coding retained_intron 107.0053 138.9734 90.06732 14.87571 4.004816 -0.6256772 11.670894 14.380371 12.438743 5.2067493 0.4890200 -0.209103675 0.10872083 0.09906667 0.13816667 0.03910000 0.6694805 0.0001703542    
ENST00000531480 ENSG00000071894 HEK293_OSMI2_6hA HEK293_TMG_6hB CPSF1 protein_coding retained_intron 107.0053 138.9734 90.06732 14.87571 4.004816 -0.6256772 12.818493 14.732054 8.321997 1.8189039 1.2738119 -0.823203331 0.11594583 0.10560000 0.09156667 -0.01403333 0.7932752 0.0001703542 FALSE  
ENST00000532725 ENSG00000071894 HEK293_OSMI2_6hA HEK293_TMG_6hB CPSF1 protein_coding retained_intron 107.0053 138.9734 90.06732 14.87571 4.004816 -0.6256772 7.018599 7.976497 8.007568 1.6309274 0.4372089 0.005601829 0.06711667 0.05640000 0.08940000 0.03300000 0.2467507 0.0001703542    
ENST00000616140 ENSG00000071894 HEK293_OSMI2_6hA HEK293_TMG_6hB CPSF1 protein_coding protein_coding 107.0053 138.9734 90.06732 14.87571 4.004816 -0.6256772 33.312061 48.353127 25.906203 5.7578908 0.5385150 -0.900053138 0.31237917 0.35796667 0.28853333 -0.06943333 0.7945635 0.0001703542 FALSE  
ENST00000620219 ENSG00000071894 HEK293_OSMI2_6hA HEK293_TMG_6hB CPSF1 protein_coding protein_coding 107.0053 138.9734 90.06732 14.87571 4.004816 -0.6256772 11.388455 19.781263 5.919191 1.9689300 0.5927088 -1.738956381 0.10604583 0.14570000 0.06540000 -0.08030000 0.0180855 0.0001703542 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.