ENSG00000053747

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000313654 ENSG00000053747 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA3 protein_coding protein_coding 2.496524 3.472645 1.537256 0.3199237 0.2052658 -1.170472 0.73076423 1.0910603 0.59852169 0.10551713 0.30465378 -0.8555129 0.35701667 0.32446667 0.45306667 0.12860000 9.804046e-01 3.610471e-10 FALSE TRUE
ENST00000399516 ENSG00000053747 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA3 protein_coding protein_coding 2.496524 3.472645 1.537256 0.3199237 0.2052658 -1.170472 0.13393424 0.0000000 0.27630254 0.00000000 0.27630254 4.8394686 0.05762917 0.00000000 0.15156667 0.15156667 7.628279e-01 3.610471e-10 FALSE TRUE
ENST00000585600 ENSG00000053747 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA3 protein_coding non_stop_decay 2.496524 3.472645 1.537256 0.3199237 0.2052658 -1.170472 0.71927233 0.7197398 0.14949958 0.33083903 0.08422082 -2.1938295 0.26276250 0.19440000 0.08760000 -0.10680000 6.973670e-01 3.610471e-10 FALSE TRUE
ENST00000586709 ENSG00000053747 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA3 protein_coding retained_intron 2.496524 3.472645 1.537256 0.3199237 0.2052658 -1.170472 0.01666482 0.0000000 0.10705245 0.00000000 0.10705245 3.5490833 0.00863750 0.00000000 0.05873333 0.05873333 7.103834e-01 3.610471e-10 FALSE FALSE
ENST00000586751 ENSG00000053747 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA3 protein_coding protein_coding 2.496524 3.472645 1.537256 0.3199237 0.2052658 -1.170472 0.07592972 0.0000000 0.20418991 0.00000000 0.10254184 4.4208186 0.04495833 0.00000000 0.11820000 0.11820000 9.218174e-02 3.610471e-10 FALSE TRUE
ENST00000588770 ENSG00000053747 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA3 protein_coding processed_transcript 2.496524 3.472645 1.537256 0.3199237 0.2052658 -1.170472 0.51160427 1.1100935 0.00000000 0.11352609 0.00000000 -6.8074754 0.15482083 0.31930000 0.00000000 -0.31930000 3.610471e-10 3.610471e-10 FALSE TRUE
ENST00000649721 ENSG00000053747 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA3 protein_coding protein_coding 2.496524 3.472645 1.537256 0.3199237 0.2052658 -1.170472 0.11640183 0.3288833 0.04372753 0.05158561 0.04372753 -2.6570551 0.04196250 0.09873333 0.02650000 -0.07223333 4.279354e-01 3.610471e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000053747 E001 1.2738774 0.0133903542 3.010713e-01   18 23689453 23689597 145 + 0.183 0.379 1.409
ENSG00000053747 E002 1.7983277 0.0653447676 5.748317e-01 0.7535550446 18 23689598 23689683 86 + 0.312 0.418 0.625
ENSG00000053747 E003 10.0368570 0.0051766053 4.334893e-01 0.6538686281 18 23689684 23689977 294 + 1.059 0.962 -0.357
ENSG00000053747 E004 12.7689976 0.0169078341 9.924833e-01 0.9979306322 18 23713920 23714072 153 + 1.096 1.086 -0.037
ENSG00000053747 E005 9.6829484 0.0039446165 4.161668e-01 0.6407308288 18 23747943 23748060 118 + 1.059 0.961 -0.363
ENSG00000053747 E006 12.7952641 0.0414123532 1.628055e-01 0.3809277490 18 23749428 23749546 119 + 1.222 1.027 -0.700
ENSG00000053747 E007 17.3073013 0.0273968625 5.399372e-01 0.7289604734 18 23750918 23751088 171 + 1.263 1.181 -0.289
ENSG00000053747 E008 13.7411805 0.0505768592 5.240697e-01 0.7178888267 18 23753721 23753812 92 + 1.183 1.084 -0.353
ENSG00000053747 E009 12.6203306 0.0226586858 4.875096e-02 0.1766950207 18 23758396 23758511 116 + 1.249 1.007 -0.870
ENSG00000053747 E010 11.0799918 0.0229414277 5.505127e-01 0.7367195417 18 23763405 23763523 119 + 1.096 1.009 -0.316
ENSG00000053747 E011 10.2758479 0.0807887463 8.227168e-01 0.9095517297 18 23773497 23773587 91 + 0.990 1.008 0.069
ENSG00000053747 E012 9.9651084 0.0036441309 3.767289e-01 0.6096554216 18 23775792 23775923 132 + 1.060 0.953 -0.395
ENSG00000053747 E013 6.8053671 0.0689844423 8.302159e-01 0.9138983155 18 23777557 23777619 63 + 0.867 0.825 -0.161
ENSG00000053747 E014 11.6016487 0.1105531821 9.599329e-01 0.9818469648 18 23784023 23784157 135 + 1.070 1.036 -0.126
ENSG00000053747 E015 3.0756017 0.0113085063 5.834122e-01 0.7592568919 18 23796023 23796148 126 + 0.491 0.579 0.413
ENSG00000053747 E016 9.5248467 0.0394118972 4.903153e-01 0.6942143705 18 23810366 23810503 138 + 1.043 0.943 -0.369
ENSG00000053747 E017 5.4800699 0.0553398545 8.866173e-01 0.9449064276 18 23813057 23813103 47 + 0.755 0.786 0.124
ENSG00000053747 E018 6.2440494 0.0133554107 2.113280e-01 0.4433562280 18 23814403 23814502 100 + 0.947 0.775 -0.664
ENSG00000053747 E019 6.8136922 0.0045474255 3.985165e-01 0.6270767748 18 23815188 23815240 53 + 0.921 0.805 -0.447
ENSG00000053747 E020 9.4871742 0.0290654912 1.773360e-02 0.0881229881 18 23815468 23815573 106 + 1.166 0.849 -1.171
ENSG00000053747 E021 7.6266539 0.0038155478 2.908795e-03 0.0228525339 18 23816388 23816487 100 + 1.115 0.761 -1.336
ENSG00000053747 E022 8.2315617 0.0044143060 8.583124e-05 0.0013157717 18 23819841 23819997 157 + 1.195 0.746 -1.682
ENSG00000053747 E023 7.2024044 0.0046029389 1.399002e-03 0.0128924879 18 23822252 23822375 124 + 1.115 0.730 -1.462
ENSG00000053747 E024 7.7166630 0.0313762750 3.501610e-01 0.5873763492 18 23824423 23824565 143 + 0.993 0.857 -0.516
ENSG00000053747 E025 5.3897851 0.0052213322 5.748309e-01 0.7535550446 18 23826702 23826799 98 + 0.715 0.790 0.301
ENSG00000053747 E026 8.4966108 0.0039078066 5.045468e-03 0.0348761403 18 23827314 23827403 90 + 1.149 0.830 -1.186
ENSG00000053747 E027 6.7001501 0.0053529277 3.263227e-01 0.5655024057 18 23827404 23827467 64 + 0.947 0.816 -0.500
ENSG00000053747 E028 8.1275010 0.0037126773 2.601907e-01 0.4991554394 18 23833828 23833952 125 + 1.018 0.878 -0.523
ENSG00000053747 E029 4.9701720 0.0085917972 6.369594e-02 0.2110311572 18 23833953 23833988 36 + 0.920 0.660 -1.037
ENSG00000053747 E030 0.6542209 0.0198600579 3.582795e-01   18 23834284 23834837 554 + 0.311 0.145 -1.397
ENSG00000053747 E031 8.6767896 0.0637558267 2.824959e-01 0.5228977744 18 23836981 23837089 109 + 1.074 0.894 -0.665
ENSG00000053747 E032 1.0239076 0.0201311839 7.765319e-01   18 23837090 23837312 223 + 0.311 0.255 -0.391
ENSG00000053747 E033 3.0775951 0.0264565305 2.780360e-01 0.5181326808 18 23838781 23838795 15 + 0.714 0.528 -0.812
ENSG00000053747 E034 5.8560614 0.1740957040 9.564775e-01 0.9800994727 18 23838796 23838878 83 + 0.821 0.799 -0.085
ENSG00000053747 E035 10.6036369 0.0883592134 8.501945e-02 0.2546475034 18 23839785 23839929 145 + 1.230 0.915 -1.144
ENSG00000053747 E036 8.2012566 0.0187826704 6.623617e-03 0.0428200239 18 23842395 23842521 127 + 1.148 0.803 -1.288
ENSG00000053747 E037 9.7852760 0.0096719101 2.736771e-02 0.1193934921 18 23842611 23842750 140 + 1.165 0.910 -0.934
ENSG00000053747 E038 9.7957910 0.0221904215 1.835228e-01 0.4084876954 18 23845009 23845124 116 + 1.115 0.947 -0.617
ENSG00000053747 E039 12.1548229 0.0088906152 9.766736e-01 0.9900769101 18 23846297 23846508 212 + 1.080 1.075 -0.016
ENSG00000053747 E040 10.3641928 0.0069644637 1.837166e-01 0.4087369680 18 23847464 23847668 205 + 1.116 0.961 -0.565
ENSG00000053747 E041 10.8395884 0.0029428134 5.969222e-02 0.2020834393 18 23857844 23857988 145 + 1.165 0.961 -0.740
ENSG00000053747 E042 11.5883279 0.0100129718 1.435195e-01 0.3526776794 18 23858689 23858829 141 + 1.165 0.999 -0.601
ENSG00000053747 E043 11.0827313 0.0031079834 4.934718e-02 0.1780236583 18 23861646 23861807 162 + 1.180 0.971 -0.760
ENSG00000053747 E044 10.0491998 0.0050295473 1.288512e-01 0.3299790059 18 23864785 23864883 99 + 1.116 0.942 -0.639
ENSG00000053747 E045 9.7338106 0.0056372616 2.171610e-01 0.4500394666 18 23867834 23867917 84 + 1.080 0.933 -0.542
ENSG00000053747 E046 12.9929852 0.0103644017 6.084513e-01 0.7758724323 18 23871431 23871661 231 + 1.061 1.111 0.180
ENSG00000053747 E047 0.0000000       18 23873020 23873044 25 +      
ENSG00000053747 E048 0.0000000       18 23873045 23873215 171 +      
ENSG00000053747 E049 9.9004554 0.1180859766 8.739342e-01 0.9381543508 18 23876294 23876407 114 + 1.028 0.978 -0.182
ENSG00000053747 E050 9.1412820 0.1860678828 9.171662e-01 0.9607826060 18 23881936 23882045 110 + 1.008 0.935 -0.271
ENSG00000053747 E051 8.1394640 0.0370875861 3.159864e-01 0.5559986902 18 23884773 23884853 81 + 0.798 0.944 0.561
ENSG00000053747 E052 7.0596612 0.0220531597 9.995179e-01 1.0000000000 18 23890011 23890117 107 + 0.864 0.855 -0.036
ENSG00000053747 E053 6.4546514 0.0045619478 9.585814e-01 0.9811634910 18 23894298 23894348 51 + 0.830 0.830 0.000
ENSG00000053747 E054 10.8167800 0.0037832502 9.922297e-01 0.9978132263 18 23894907 23895058 152 + 1.039 1.030 -0.033
ENSG00000053747 E055 0.2027342 0.0378171114 1.000000e+00   18 23898261 23898451 191 + 0.000 0.079 9.610
ENSG00000053747 E056 0.3751086 0.0248172431 6.021935e-01   18 23898737 23898737 1 + 0.000 0.146 10.576
ENSG00000053747 E057 11.6650595 0.0139576184 5.824516e-01 0.7586567907 18 23898738 23898848 111 + 1.114 1.044 -0.254
ENSG00000053747 E058 13.9818587 0.0023618777 5.905259e-01 0.7640695058 18 23898954 23899065 112 + 1.098 1.143 0.165
ENSG00000053747 E059 18.0434773 0.0024685956 6.058730e-01 0.7741183281 18 23899288 23899455 168 + 1.195 1.234 0.136
ENSG00000053747 E060 0.1426347 0.0318462387 1.854057e-01   18 23899456 23899700 245 + 0.183 0.000 -12.488
ENSG00000053747 E061 14.6255325 0.0146963718 4.811101e-01 0.6878388207 18 23901127 23901323 197 + 1.196 1.109 -0.310
ENSG00000053747 E062 9.3181599 0.0057781843 3.933601e-01 0.6230353427 18 23903009 23903125 117 + 1.039 0.933 -0.395
ENSG00000053747 E063 11.0371793 0.0030719881 5.990270e-01 0.7695687134 18 23903933 23904087 155 + 1.079 1.015 -0.235
ENSG00000053747 E064 11.6421213 0.0031573269 7.784857e-01 0.8838399476 18 23904553 23904694 142 + 1.040 1.062 0.081
ENSG00000053747 E065 11.6277772 0.0030761479 7.603503e-01 0.8727550008 18 23905522 23905624 103 + 1.079 1.039 -0.146
ENSG00000053747 E066 13.3948351 0.0041153750 6.141798e-01 0.7796753728 18 23907550 23907666 117 + 1.149 1.091 -0.209
ENSG00000053747 E067 17.6565002 0.0022341775 8.570532e-01 0.9288543807 18 23907756 23907935 180 + 1.237 1.212 -0.085
ENSG00000053747 E068 18.2544979 0.0018736362 9.144506e-01 0.9593191456 18 23909153 23909295 143 + 1.236 1.238 0.005
ENSG00000053747 E069 19.6430606 0.0018417165 6.633585e-01 0.8120092995 18 23912711 23912881 171 + 1.298 1.253 -0.158
ENSG00000053747 E070 21.1303322 0.0108495120 7.601200e-01 0.8725969864 18 23914410 23914561 152 + 1.320 1.283 -0.131
ENSG00000053747 E071 19.4405458 0.0018076045 3.356269e-01 0.5740997361 18 23914698 23914860 163 + 1.209 1.285 0.268
ENSG00000053747 E072 24.1418839 0.0018402599 7.711977e-01 0.8793811095 18 23915289 23915422 134 + 1.341 1.355 0.049
ENSG00000053747 E073 23.6007326 0.0165067122 6.872201e-01 0.8273132517 18 23916551 23916695 145 + 1.321 1.347 0.093
ENSG00000053747 E074 17.2109252 0.0089344944 6.288246e-01 0.7897359260 18 23920935 23921054 120 + 1.181 1.218 0.132
ENSG00000053747 E075 16.5560971 0.0019586301 7.491528e-01 0.8662630969 18 23921452 23921585 134 + 1.180 1.202 0.077
ENSG00000053747 E076 14.9774789 0.0028242489 9.622529e-02 0.2751379367 18 23928123 23928240 118 + 1.039 1.201 0.583
ENSG00000053747 E077 18.2571751 0.0019673366 6.244097e-02 0.2082355433 18 23928625 23928765 141 + 1.115 1.280 0.586
ENSG00000053747 E078 15.7178628 0.0026343154 3.299260e-01 0.5689034120 18 23931062 23931154 93 + 1.115 1.201 0.307
ENSG00000053747 E079 11.5917706 0.0237982058 5.623756e-01 0.7449809103 18 23931155 23931201 47 + 1.114 1.031 -0.303
ENSG00000053747 E080 0.0000000       18 23931202 23931419 218 +      
ENSG00000053747 E081 0.0000000       18 23931420 23931691 272 +      
ENSG00000053747 E082 18.5661699 0.0054298778 2.726486e-01 0.5125087553 18 23932160 23932291 132 + 1.180 1.275 0.336
ENSG00000053747 E083 0.1614157 0.0323541757 1.852292e-01   18 23932292 23932585 294 + 0.183 0.000 -12.487
ENSG00000053747 E084 21.4760765 0.0015486481 5.202046e-02 0.1844540362 18 23933782 23933935 154 + 1.180 1.340 0.563
ENSG00000053747 E085 22.9220207 0.0015666330 5.351806e-02 0.1879090670 18 23939223 23939386 164 + 1.209 1.363 0.540
ENSG00000053747 E086 28.7388682 0.0016833011 1.765659e-02 0.0878473783 18 23943788 23943971 184 + 1.286 1.460 0.605
ENSG00000053747 E087 14.3482799 0.0082599867 4.120578e-01 0.6376374416 18 23946144 23946183 40 + 1.079 1.162 0.296
ENSG00000053747 E088 22.4615623 0.0015852410 4.215323e-05 0.0007193115 18 23946184 23946284 101 + 1.018 1.392 1.329
ENSG00000053747 E089 0.3150090 0.0263344960 4.892318e-01   18 23946477 23946837 361 + 0.183 0.079 -1.394
ENSG00000053747 E090 26.8256907 0.0015612150 1.427002e-05 0.0002852375 18 23949765 23949892 128 + 1.098 1.463 1.284
ENSG00000053747 E091 17.0009268 0.0024603467 3.087545e-03 0.0239433822 18 23949893 23949924 32 + 0.972 1.267 1.062
ENSG00000053747 E092 31.0609055 0.0013152533 1.614772e-04 0.0022362020 18 23950029 23950159 131 + 1.236 1.518 0.979
ENSG00000053747 E093 27.9233666 0.0018561958 1.402168e-03 0.0129181537 18 23951684 23951777 94 + 1.223 1.471 0.864
ENSG00000053747 E094 29.8245928 0.0012261392 1.131246e-03 0.0108999486 18 23952990 23953109 120 + 1.249 1.492 0.842
ENSG00000053747 E095 46.4410751 0.0009209622 3.163802e-02 0.1321607771 18 23954503 23956222 1720 + 1.538 1.656 0.404