ENSG00000038382

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000344135 ENSG00000038382 HEK293_OSMI2_6hA HEK293_TMG_6hB TRIO protein_coding protein_coding 10.28557 13.16377 10.34248 0.2124396 0.8346264 -0.3476925 1.4551993 3.354273 0.2508621 0.3736429 0.1489804 -3.6889355 0.13500000 0.25583333 0.02486667 -0.23096667 3.025412e-02 1.146625e-06 FALSE TRUE
ENST00000508283 ENSG00000038382 HEK293_OSMI2_6hA HEK293_TMG_6hB TRIO protein_coding retained_intron 10.28557 13.16377 10.34248 0.2124396 0.8346264 -0.3476925 1.2137136 2.048318 1.4168264 0.6858728 0.7086689 -0.5286564 0.11045417 0.15446667 0.12693333 -0.02753333 9.236581e-01 1.146625e-06 FALSE FALSE
ENST00000508717 ENSG00000038382 HEK293_OSMI2_6hA HEK293_TMG_6hB TRIO protein_coding retained_intron 10.28557 13.16377 10.34248 0.2124396 0.8346264 -0.3476925 0.8392732 1.129760 0.0000000 0.3977113 0.0000000 -6.8325863 0.08231667 0.08673333 0.00000000 -0.08673333 3.109891e-04 1.146625e-06 FALSE TRUE
ENST00000512070 ENSG00000038382 HEK293_OSMI2_6hA HEK293_TMG_6hB TRIO protein_coding nonsense_mediated_decay 10.28557 13.16377 10.34248 0.2124396 0.8346264 -0.3476925 2.0538518 1.368401 3.9544746 0.2310899 0.3274842 1.5241337 0.20633333 0.10370000 0.38220000 0.27850000 1.146625e-06 1.146625e-06 TRUE TRUE
MSTRG.25950.5 ENSG00000038382 HEK293_OSMI2_6hA HEK293_TMG_6hB TRIO protein_coding   10.28557 13.16377 10.34248 0.2124396 0.8346264 -0.3476925 2.6404669 3.657419 2.7633386 0.4577782 0.2297070 -0.4031414 0.25935417 0.27806667 0.27186667 -0.00620000 1.000000e+00 1.146625e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000038382 E001 2.0649512 0.0179430231 9.512459e-01 9.776168e-01 5 14143342 14143684 343 + 0.476 0.504 0.135
ENSG00000038382 E002 0.0000000       5 14143685 14143701 17 +      
ENSG00000038382 E003 0.0000000       5 14143702 14143769 68 +      
ENSG00000038382 E004 0.1723744 0.0332918801 5.692067e-01   5 14143770 14143774 5 + 0.000 0.118 15.952
ENSG00000038382 E005 1.6118719 0.0114014461 7.760270e-01 8.823875e-01 5 14143775 14143836 62 + 0.425 0.409 -0.084
ENSG00000038382 E006 6.1123416 0.0068061771 2.408284e-01 4.775261e-01 5 14143837 14143882 46 + 0.902 0.801 -0.391
ENSG00000038382 E007 0.1723744 0.0332918801 5.692067e-01   5 14183798 14183959 162 + 0.000 0.118 15.952
ENSG00000038382 E008 15.3754456 0.0188748550 1.824293e-01 4.071959e-01 5 14270825 14270899 75 + 1.256 1.169 -0.306
ENSG00000038382 E009 30.4814977 0.0141527705 4.441119e-03 3.160902e-02 5 14280322 14280436 115 + 1.583 1.400 -0.631
ENSG00000038382 E010 45.8293201 0.0010247855 7.200841e-11 5.246110e-09 5 14286871 14287063 193 + 1.798 1.501 -1.008
ENSG00000038382 E011 0.5177432 0.0233764701 6.742110e-01   5 14287064 14287104 41 + 0.124 0.212 0.921
ENSG00000038382 E012 56.8517820 0.0055631831 4.025049e-08 1.640379e-06 5 14290716 14290976 261 + 1.880 1.608 -0.923
ENSG00000038382 E013 53.0617746 0.0007284650 1.547471e-06 4.160143e-05 5 14290977 14291228 252 + 1.818 1.637 -0.614
ENSG00000038382 E014 20.2617954 0.0021571103 1.876161e-03 1.623600e-02 5 14293012 14293040 29 + 1.424 1.237 -0.651
ENSG00000038382 E015 28.6303553 0.0014248693 1.801182e-05 3.495795e-04 5 14293041 14293134 94 + 1.582 1.354 -0.784
ENSG00000038382 E016 45.7306863 0.0035888951 1.048773e-06 2.962012e-05 5 14297072 14297263 192 + 1.781 1.552 -0.779
ENSG00000038382 E017 0.0000000       5 14297264 14297513 250 +      
ENSG00000038382 E018 39.4237204 0.0012624319 1.140519e-04 1.667123e-03 5 14304461 14304592 132 + 1.691 1.526 -0.563
ENSG00000038382 E019 56.8448911 0.0008447176 1.385354e-05 2.779923e-04 5 14316513 14316743 231 + 1.835 1.681 -0.519
ENSG00000038382 E020 44.0151440 0.0009192141 8.037710e-11 5.808460e-09 5 14330778 14330900 123 + 1.784 1.484 -1.020
ENSG00000038382 E021 45.3095781 0.0085859025 4.210296e-04 4.935154e-03 5 14336536 14336727 192 + 1.754 1.565 -0.643
ENSG00000038382 E022 30.2086359 0.5329672074 4.551742e-01 6.696211e-01 5 14358178 14358347 170 + 1.420 1.554 0.461
ENSG00000038382 E023 37.0465196 0.0024463849 5.735286e-01 7.526454e-01 5 14359357 14359531 175 + 1.578 1.596 0.062
ENSG00000038382 E024 46.2132903 0.0008093362 2.426786e-04 3.138797e-03 5 14363732 14363927 196 + 1.744 1.607 -0.464
ENSG00000038382 E025 39.2148744 0.0100598609 2.496556e-02 1.121206e-01 5 14364650 14364816 167 + 1.663 1.559 -0.355
ENSG00000038382 E026 35.3029606 0.0040936165 1.315029e-02 7.105072e-02 5 14366860 14366979 120 + 1.621 1.516 -0.359
ENSG00000038382 E027 60.3840960 0.0006673427 8.558413e-06 1.833731e-04 5 14368708 14368899 192 + 1.864 1.714 -0.505
ENSG00000038382 E028 58.5594973 0.0005968951 2.238304e-09 1.221451e-07 5 14369374 14369523 150 + 1.879 1.655 -0.758
ENSG00000038382 E029 53.2520251 0.0041431940 1.049524e-02 6.023544e-02 5 14374229 14374343 115 + 1.780 1.691 -0.300
ENSG00000038382 E030 56.3371971 0.0130599231 1.270005e-02 6.924014e-02 5 14378012 14378127 116 + 1.818 1.694 -0.422
ENSG00000038382 E031 60.7088456 0.0023187001 5.492224e-03 3.717939e-02 5 14381130 14381252 123 + 1.831 1.745 -0.290
ENSG00000038382 E032 0.4341107 0.0244411696 1.178312e-01   5 14387343 14387437 95 + 0.000 0.287 17.531
ENSG00000038382 E033 70.4540515 0.0067417682 3.013922e-01 5.418806e-01 5 14387438 14387632 195 + 1.857 1.850 -0.024
ENSG00000038382 E034 45.4471145 0.0007618393 4.911085e-01 6.947437e-01 5 14387732 14387847 116 + 1.661 1.678 0.058
ENSG00000038382 E035 0.3032425 0.0244411696 2.542309e-01   5 14387848 14387950 103 + 0.000 0.211 16.949
ENSG00000038382 E036 45.9165403 0.0018717517 5.609115e-03 3.777439e-02 5 14388613 14388679 67 + 1.723 1.626 -0.328
ENSG00000038382 E037 57.6807499 0.0007250169 1.313278e-02 7.100072e-02 5 14389289 14389398 110 + 1.800 1.737 -0.213
ENSG00000038382 E038 45.7439806 0.0054704933 2.907185e-01 5.313503e-01 5 14390231 14390300 70 + 1.674 1.657 -0.056
ENSG00000038382 E039 0.3559677 0.6053924257 2.956855e-01   5 14390334 14390472 139 + 0.227 0.000 -17.200
ENSG00000038382 E040 56.2032945 0.0049423392 4.417325e-01 6.599343e-01 5 14390901 14390990 90 + 1.749 1.756 0.024
ENSG00000038382 E041 56.9643935 0.0006187949 4.643145e-01 6.760980e-01 5 14394038 14394130 93 + 1.754 1.773 0.063
ENSG00000038382 E042 50.4656434 0.0013864449 2.591660e-01 4.980585e-01 5 14397043 14397154 112 + 1.714 1.709 -0.018
ENSG00000038382 E043 0.2027342 0.0458435604 5.684079e-01   5 14397155 14397341 187 + 0.000 0.119 15.955
ENSG00000038382 E044 61.4331809 0.0009198664 1.000577e-01 2.818966e-01 5 14398880 14399023 144 + 1.807 1.784 -0.076
ENSG00000038382 E045 40.4926525 0.0008417545 2.012463e-01 4.312842e-01 5 14399024 14399070 47 + 1.628 1.611 -0.061
ENSG00000038382 E046 4.7518521 0.0080599438 8.955309e-01 9.494962e-01 5 14399071 14399400 330 + 0.752 0.779 0.107
ENSG00000038382 E047 48.0236105 0.0008677793 7.753419e-01 8.819452e-01 5 14400963 14401064 102 + 1.671 1.709 0.129
ENSG00000038382 E048 59.1800439 0.0006683089 9.175299e-01 9.609893e-01 5 14405848 14405990 143 + 1.759 1.808 0.164
ENSG00000038382 E049 0.5778428 0.1552476284 1.321736e-01   5 14406214 14406572 359 + 0.000 0.293 17.571
ENSG00000038382 E050 52.0649723 0.0007500993 2.031685e-01 4.335489e-01 5 14406573 14406672 100 + 1.664 1.780 0.391
ENSG00000038382 E051 0.0000000       5 14418783 14418830 48 +      
ENSG00000038382 E052 29.2648523 0.0012414391 1.181937e-01 3.128820e-01 5 14419778 14419813 36 + 1.396 1.550 0.528
ENSG00000038382 E053 60.7428703 0.0009601172 7.240558e-01 8.506031e-01 5 14419814 14420021 208 + 1.769 1.806 0.124
ENSG00000038382 E054 0.4756169 0.0245215024 1.169158e-01   5 14420022 14420186 165 + 0.000 0.288 17.535
ENSG00000038382 E055 1.1603853 0.0140938730 8.903120e-01   5 14420458 14420800 343 + 0.300 0.353 0.333
ENSG00000038382 E056 0.3032425 0.0244411696 2.542309e-01   5 14440819 14441042 224 + 0.000 0.211 16.949
ENSG00000038382 E057 0.1308682 0.0309302325 5.707002e-01   5 14441043 14441360 318 + 0.000 0.118 15.947
ENSG00000038382 E058 57.6158987 0.0197137950 5.256691e-01 7.189741e-01 5 14461019 14461311 293 + 1.710 1.814 0.349
ENSG00000038382 E059 38.0063960 0.0010969821 8.537144e-01 9.269677e-01 5 14462755 14462925 171 + 1.574 1.617 0.145
ENSG00000038382 E060 42.2496123 0.0008699301 6.645586e-01 8.127522e-01 5 14465545 14465640 96 + 1.625 1.655 0.101
ENSG00000038382 E061 0.2735028 0.0263050279 8.932840e-01   5 14465641 14466451 811 + 0.124 0.118 -0.085
ENSG00000038382 E062 65.4193960 0.0006188588 1.350907e-01 3.398480e-01 5 14471318 14471466 149 + 1.829 1.817 -0.042
ENSG00000038382 E063 54.5905912 0.0010661457 5.293143e-01 7.215656e-01 5 14472592 14472658 67 + 1.734 1.756 0.077
ENSG00000038382 E064 41.5020784 0.0010641044 9.976910e-01 1.000000e+00 5 14473994 14474011 18 + 1.604 1.658 0.181
ENSG00000038382 E065 61.9727764 0.0007695178 3.115697e-01 5.519667e-01 5 14474012 14474097 86 + 1.798 1.806 0.026
ENSG00000038382 E066 56.5017292 0.0091135624 1.952537e-02 9.427546e-02 5 14476894 14476963 70 + 1.809 1.709 -0.338
ENSG00000038382 E067 0.6731895 0.0298183262 2.403105e-01   5 14476964 14477333 370 + 0.301 0.118 -1.669
ENSG00000038382 E068 61.9162349 0.0069109525 7.100744e-03 4.508261e-02 5 14479261 14479320 60 + 1.851 1.742 -0.370
ENSG00000038382 E069 45.7026564 0.0009089006 4.012245e-02 1.550074e-01 5 14479321 14479350 30 + 1.697 1.643 -0.186
ENSG00000038382 E070 67.9974545 0.0043563462 2.115916e-02 9.985283e-02 5 14479919 14480011 93 + 1.874 1.806 -0.228
ENSG00000038382 E071 51.6982226 0.0118797044 9.060582e-01 9.551412e-01 5 14481234 14481284 51 + 1.696 1.746 0.170
ENSG00000038382 E072 63.1338019 0.0064893749 6.904920e-01 8.293943e-01 5 14481541 14481618 78 + 1.790 1.821 0.106
ENSG00000038382 E073 1.2075010 0.0180445082 5.458543e-01   5 14481619 14481796 178 + 0.367 0.288 -0.496
ENSG00000038382 E074 1.8944256 0.9441489968 6.583350e-01 8.088984e-01 5 14482417 14482581 165 + 0.491 0.420 -0.361
ENSG00000038382 E075 96.1970579 0.0081533687 8.548157e-01 9.274913e-01 5 14482582 14482773 192 + 1.954 2.021 0.227
ENSG00000038382 E076 77.1459190 0.0005947474 2.255354e-01 4.599793e-01 5 14485069 14485246 178 + 1.841 1.945 0.347
ENSG00000038382 E077 49.7098522 0.0042506926 5.915960e-03 3.932772e-02 5 14487464 14487730 267 + 1.586 1.803 0.736
ENSG00000038382 E078 71.5645522 0.0055137107 1.023054e-04 1.524419e-03 5 14487731 14488260 530 + 1.703 1.976 0.919
ENSG00000038382 E079 0.3751086 0.0266173328 2.519442e-01   5 14488261 14488447 187 + 0.000 0.212 16.954
ENSG00000038382 E080 5.9396916 0.0045655069 3.602346e-01 5.958865e-01 5 14488448 14489029 582 + 0.752 0.914 0.633
ENSG00000038382 E081 2.1602826 0.0095932003 4.736709e-01 6.825354e-01 5 14489030 14489069 40 + 0.425 0.582 0.762
ENSG00000038382 E082 2.3557126 0.1004526068 4.731082e-01 6.822050e-01 5 14489070 14489165 96 + 0.597 0.497 -0.462
ENSG00000038382 E083 2.4554106 0.1561352449 3.339174e-01 5.725074e-01 5 14492370 14492566 197 + 0.603 0.462 -0.666
ENSG00000038382 E084 102.3506039 0.0015455565 1.670070e-02 8.436441e-02 5 14492567 14492814 248 + 1.933 2.080 0.495
ENSG00000038382 E085 91.4892723 0.0090924098 1.241468e-01 3.222959e-01 5 14496879 14497005 127 + 1.885 2.029 0.482
ENSG00000038382 E086 36.1008360 0.0027810807 5.208903e-02 1.846053e-01 5 14497006 14497017 12 + 1.470 1.643 0.591
ENSG00000038382 E087 61.1680927 0.0006329924 1.952191e-01 4.236365e-01 5 14497847 14497874 28 + 1.731 1.843 0.378
ENSG00000038382 E088 77.2444330 0.0051787309 6.561754e-01 8.074670e-01 5 14498089 14498138 50 + 1.876 1.905 0.097
ENSG00000038382 E089 110.3572469 0.0008796300 8.912504e-01 9.472483e-01 5 14498139 14498251 113 + 2.021 2.070 0.164
ENSG00000038382 E090 0.9476022 0.5237773411 9.861381e-01   5 14498516 14498518 3 + 0.224 0.305 0.593
ENSG00000038382 E091 118.6452306 0.0027539678 6.242158e-02 2.081900e-01 5 14498519 14498640 122 + 2.007 2.135 0.430
ENSG00000038382 E092 0.8818932 0.0393659445 7.955594e-01   5 14498641 14499181 541 + 0.221 0.289 0.513
ENSG00000038382 E093 84.1289376 0.0011474651 2.061272e-04 2.741926e-03 5 14502579 14502657 79 + 1.811 2.018 0.694
ENSG00000038382 E094 110.3356756 0.0025228809 1.616721e-08 7.238504e-07 5 14504393 14504593 201 + 1.877 2.165 0.967
ENSG00000038382 E095 4.3629085 0.0122273877 1.619198e-02 8.250137e-02 5 14504594 14504674 81 + 0.476 0.880 1.727
ENSG00000038382 E096 90.3134628 0.0514891096 2.956754e-03 2.314153e-02 5 14507122 14507260 139 + 1.731 2.102 1.249
ENSG00000038382 E097 447.5771224 1.5579341808 3.133888e-01 5.536145e-01 5 14507880 14510204 2325 + 2.368 2.810 1.472
ENSG00000038382 E098 0.5059767 0.0214877164 1.155238e-01   5 14531744 14532128 385 + 0.000 0.288 17.536