• ENSG00000004897
  • 1 Isoform Switch
  • 2 Differential Exon Usage

ENSG00000004897

1 Isoform Switch

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

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isoform_idColumn filter
gene_idColumn filter
condition_1Column filter
condition_2Column filter
gene_nameColumn filter
gene_biotypeColumn filter
iso_biotypeColumn filter
gene_overall_meanColumn filter
gene_value_1Column filter
gene_value_2Column filter
gene_stderr_1Column filter
gene_stderr_2Column filter
gene_log2_fold_changeColumn filter
iso_overall_meanColumn filter
iso_value_1Column filter
iso_value_2Column filter
iso_stderr_1Column filter
iso_stderr_2Column filter
iso_log2_fold_changeColumn filter
IF_overallColumn filter
IF1Column filter
IF2Column filter
dIFColumn filter
isoform_switch_q_valueColumn filter
gene_switch_q_valueColumn filter
PTCColumn filter
codingPotentialColumn filter
ENST00000066544 ENSG00000004897 HEK293_OSMI2_6hA HEK293_TMG_6hB CDC27 protein_coding protein_coding 33.8213 10.66884 66.31797 1.626485 0.4228047 2.634863 13.8645436 4.7812889 24.697748 0.86260058 2.64629995 2.366478 0.47980417 0.44560000 0.37296667 -0.07263333 7.606379e-01 1.015923e-07 FALSE TRUE
ENST00000527547 ENSG00000004897 HEK293_OSMI2_6hA HEK293_TMG_6hB CDC27 protein_coding protein_coding 33.8213 10.66884 66.31797 1.626485 0.4228047 2.634863 6.5800503 0.9262385 13.008374 0.92623847 0.64233275 3.797529 0.11937083 0.07103333 0.19613333 0.12510000 3.004303e-01 1.015923e-07 FALSE TRUE
ENST00000531206 ENSG00000004897 HEK293_OSMI2_6hA HEK293_TMG_6hB CDC27 protein_coding protein_coding 33.8213 10.66884 66.31797 1.626485 0.4228047 2.634863 2.8627210 0.1783375 5.964179 0.01399482 0.02580906 4.987348 0.05916667 0.01733333 0.08996667 0.07263333 1.015923e-07 1.015923e-07 FALSE TRUE
ENST00000570740 ENSG00000004897 HEK293_OSMI2_6hA HEK293_TMG_6hB CDC27 protein_coding nonsense_mediated_decay 33.8213 10.66884 66.31797 1.626485 0.4228047 2.634863 4.6424504 2.7922457 7.863501 0.74192598 0.44868752 1.490422 0.16196250 0.25323333 0.11860000 -0.13463333 1.263373e-02 1.015923e-07   FALSE
ENST00000575483 ENSG00000004897 HEK293_OSMI2_6hA HEK293_TMG_6hB CDC27 protein_coding protein_coding 33.8213 10.66884 66.31797 1.626485 0.4228047 2.634863 0.7095585 0.0000000 3.367097 0.00000000 2.52360315 8.399640 0.01167083 0.00000000 0.05030000 0.05030000 5.728929e-01 1.015923e-07 FALSE FALSE
MSTRG.14536.3 ENSG00000004897 HEK293_OSMI2_6hA HEK293_TMG_6hB CDC27 protein_coding   33.8213 10.66884 66.31797 1.626485 0.4228047 2.634863 2.4867626 1.0454723 5.183610 0.62019641 0.80211962 2.298849 0.08507500 0.10636667 0.07823333 -0.02813333 9.882125e-01 1.015923e-07 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

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groupIDColumn filter
featureIDColumn filter
exonBaseMeanColumn filter
dispersionColumn filter
pvalueColumn filter
padjColumn filter
seqnamesColumn filter
startColumn filter
endColumn filter
widthColumn filter
strandColumn filter
HEK293_TMG_6hBColumn filter
HEK293_OSMI2_6hAColumn filter
log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hBColumn filter
ENSG00000004897 E001 723.8595422 1.9390657809 0.5003166068 0.700966095 17 47117703 47120254 2552 - 2.671 2.929 0.856
ENSG00000004897 E002 175.2766994 1.4758058031 0.4731659923 0.682253632 17 47120255 47120609 355 - 2.065 2.294 0.766
ENSG00000004897 E003 168.1439625 1.4497416737 0.4182072557 0.642284138 17 47120610 47120770 161 - 2.031 2.324 0.979
ENSG00000004897 E004 134.5671554 1.3746714579 0.4171132366 0.641485738 17 47120771 47120809 39 - 1.939 2.216 0.927
ENSG00000004897 E005 142.9869673 1.4067941404 0.4589591653 0.672457665 17 47120810 47120879 70 - 1.976 2.211 0.786
ENSG00000004897 E006 179.7881792 1.4720660649 0.4220195778 0.645151868 17 47120880 47121017 138 - 2.061 2.348 0.960
ENSG00000004897 E007 175.4426510 0.0099783811 0.0960924166 0.274885411 17 47122444 47122536 93 - 2.085 2.240 0.518
ENSG00000004897 E008 107.2773548 0.0038855215 0.5188251318 0.714245570 17 47122537 47122551 15 - 1.883 1.991 0.363
ENSG00000004897 E009 139.8561290 0.0032280101 0.5939706357 0.766317021 17 47122552 47122600 49 - 1.998 2.099 0.339
ENSG00000004897 E010 5.3322649 0.0552464194 0.2722862685 0.512195206 17 47122601 47122619 19 - 0.636 0.891 1.026
ENSG00000004897 E011 158.9725483 0.0137113010 0.6779610827 0.821433389 17 47123886 47123960 75 - 2.061 2.110 0.166
ENSG00000004897 E012 202.8828013 0.0236569984 0.6564632213 0.807633904 17 47129393 47129521 129 - 2.165 2.215 0.169
ENSG00000004897 E013 178.6915977 0.0370598506 0.8796071411 0.941092094 17 47132257 47132374 118 - 2.107 2.176 0.232
ENSG00000004897 E014 239.6516591 0.0216801033 0.4065475550 0.633439689 17 47137152 47137360 209 - 2.242 2.263 0.070
ENSG00000004897 E015 201.5054397 0.0199782895 0.3073423097 0.547954826 17 47138739 47138891 153 - 2.169 2.180 0.034
ENSG00000004897 E016 0.9034506 0.5488980530 0.1244738528   17 47139771 47139973 203 - 0.109 0.527 3.054
ENSG00000004897 E017 0.8627522 0.0215058219 0.9177035457   17 47141844 47141852 9 - 0.191 0.244 0.448
ENSG00000004897 E018 223.4903082 0.0155504476 0.2570525671 0.495864977 17 47141853 47142022 170 - 2.214 2.224 0.031
ENSG00000004897 E019 49.3357431 0.0418864529 0.6301059733 0.790444962 17 47142023 47142025 3 - 1.565 1.591 0.087
ENSG00000004897 E020 253.8738073 0.0222615533 0.3583830508 0.594501587 17 47142229 47142427 199 - 2.267 2.290 0.076
ENSG00000004897 E021 108.9483131 0.0284942894 0.2170463403 0.449919375 17 47142428 47142436 9 - 1.910 1.885 -0.085
ENSG00000004897 E022 201.6746350 0.0294586250 0.0951174224 0.273189116 17 47143883 47143982 100 - 2.179 2.125 -0.180
ENSG00000004897 E023 116.7077724 0.0342271046 0.0213519847 0.100497716 17 47151806 47151813 8 - 1.955 1.815 -0.473
ENSG00000004897 E024 196.4262805 0.0254059460 0.0498891289 0.179399516 17 47151814 47151918 105 - 2.171 2.090 -0.273
ENSG00000004897 E025 9.7897175 0.0038265782 0.0024946184 0.020297220 17 47151919 47151936 18 - 0.961 0.513 -1.849
ENSG00000004897 E026 124.7831828 0.0290440047 0.2832002254 0.523636434 17 47154672 47154697 26 - 1.967 1.951 -0.052
ENSG00000004897 E027 133.1890243 0.0293697998 0.1458010634 0.356064568 17 47154698 47154754 57 - 2.000 1.949 -0.171
ENSG00000004897 E028 98.5726007 0.0432458136 0.1380628588 0.344549499 17 47154755 47154786 32 - 1.875 1.792 -0.280
ENSG00000004897 E029 7.6166228 0.7423740755 0.5105278394 0.708365270 17 47154787 47154864 78 - 0.796 0.908 0.432
ENSG00000004897 E030 6.8895834 0.0111152138 0.8347869612 0.916433314 17 47156647 47156912 266 - 0.756 0.848 0.364
ENSG00000004897 E031 133.0683114 0.0325250476 0.1028202312 0.286814062 17 47156913 47156983 71 - 2.002 1.938 -0.213
ENSG00000004897 E032 125.0466950 0.0273657121 0.1152656700 0.307904708 17 47156984 47157054 71 - 1.973 1.927 -0.157
ENSG00000004897 E033 79.9152481 0.0326953709 0.0759476362 0.236665894 17 47157055 47157059 5 - 1.789 1.691 -0.330
ENSG00000004897 E034 109.0373954 0.0203408573 0.0634264420 0.210417438 17 47157060 47157124 65 - 1.917 1.849 -0.231
ENSG00000004897 E035 213.4495115 0.0126180657 0.0120807434 0.066781292 17 47157230 47157384 155 - 2.206 2.136 -0.236
ENSG00000004897 E036 146.9608616 0.0003771425 0.0003885384 0.004620318 17 47158206 47158303 98 - 2.052 1.978 -0.246
ENSG00000004897 E037 147.8558416 1.4566378839 0.6962523738 0.833137216 17 47169917 47170042 126 - 2.036 2.041 0.015
ENSG00000004897 E038 157.7153738 0.0100246290 0.1223686290 0.319523062 17 47171917 47172064 148 - 2.073 2.035 -0.127
ENSG00000004897 E039 0.1426347 0.0313724044 1.0000000000   17 47181282 47181561 280 - 0.056 0.001 -6.260
ENSG00000004897 E040 117.2624618 0.0111425910 0.0597450563 0.202201855 17 47181562 47181637 76 - 1.946 1.907 -0.133
ENSG00000004897 E041 1.6668801 0.0113136561 0.4423949531 0.660322371 17 47188746 47189145 400 - 0.323 0.513 1.032
ENSG00000004897 E042 85.2114013 0.0254859175 0.1523399780 0.365750536 17 47189146 47189260 115 - 1.809 1.769 -0.135
ENSG00000004897 E043 8.9813310 0.1114861479 0.0414482153 0.158497192 17 47189261 47189422 162 - 0.916 0.519 -1.655