ENSG00000278540

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000614428 ENSG00000278540 HEK293_OSMI2_2hA HEK293_TMG_2hB ACACA protein_coding protein_coding 23.41941 25.05191 19.15747 2.037031 0.8224548 -0.3868368 5.5925513 1.9227055 6.507005 1.2001147 0.49746073 1.7535872 0.25581667 0.071800000 0.34293333 0.27113333 5.252526e-03 5.128135e-13 FALSE TRUE
ENST00000614438 ENSG00000278540 HEK293_OSMI2_2hA HEK293_TMG_2hB ACACA protein_coding protein_coding 23.41941 25.05191 19.15747 2.037031 0.8224548 -0.3868368 1.9351490 1.1535241 1.743550 1.1535241 0.87531925 0.5917775 0.08033333 0.044200000 0.08926667 0.04506667 5.356305e-01 5.128135e-13 FALSE TRUE
ENST00000616317 ENSG00000278540 HEK293_OSMI2_2hA HEK293_TMG_2hB ACACA protein_coding protein_coding 23.41941 25.05191 19.15747 2.037031 0.8224548 -0.3868368 3.1754880 3.5301768 3.132059 0.2582811 0.24189180 -0.1721113 0.14182917 0.142066667 0.16313333 0.02106667 6.054050e-01 5.128135e-13 FALSE TRUE
ENST00000619546 ENSG00000278540 HEK293_OSMI2_2hA HEK293_TMG_2hB ACACA protein_coding protein_coding 23.41941 25.05191 19.15747 2.037031 0.8224548 -0.3868368 7.6307996 11.7832668 2.302043 1.2520428 0.22043618 -2.3507236 0.30059167 0.469433333 0.12146667 -0.34796667 5.128135e-13 5.128135e-13 FALSE TRUE
MSTRG.14206.14 ENSG00000278540 HEK293_OSMI2_2hA HEK293_TMG_2hB ACACA protein_coding   23.41941 25.05191 19.15747 2.037031 0.8224548 -0.3868368 0.4813383 0.2056729 1.108542 0.1040554 0.06764357 2.3747027 0.02216667 0.007666667 0.05776667 0.05010000 1.757162e-04 5.128135e-13 FALSE TRUE
MSTRG.14206.27 ENSG00000278540 HEK293_OSMI2_2hA HEK293_TMG_2hB ACACA protein_coding   23.41941 25.05191 19.15747 2.037031 0.8224548 -0.3868368 1.7971945 4.9230258 1.596470 0.3538669 0.74458112 -1.6185786 0.08022917 0.200833333 0.08430000 -0.11653333 2.290132e-01 5.128135e-13 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000278540 E001 1.5457760 0.0615212814 3.195313e-03 1.084202e-02 17 37084992 37084993 2 - 0.000 0.567 25.279
ENSG00000278540 E002 2.7969547 0.0224266313 2.624342e-05 1.583003e-04 17 37084994 37084997 4 - 0.000 0.778 26.240
ENSG00000278540 E003 1073.4941183 0.0102196090 6.438270e-13 1.631066e-11 17 37084998 37086816 1819 - 2.805 3.161 1.185
ENSG00000278540 E004 114.3141010 0.0094431770 3.153042e-04 1.442105e-03 17 37086817 37086875 59 - 1.915 2.161 0.826
ENSG00000278540 E005 70.2424977 0.0176953348 1.402398e-02 3.828016e-02 17 37086876 37086879 4 - 1.720 1.944 0.755
ENSG00000278540 E006 131.2792931 0.0074148687 1.754401e-05 1.102083e-04 17 37086880 37087035 156 - 1.962 2.227 0.884
ENSG00000278540 E007 139.1833846 0.0076371660 4.118042e-05 2.366818e-04 17 37087036 37087176 141 - 1.996 2.246 0.839
ENSG00000278540 E008 83.0054629 0.0025684482 1.299630e-06 1.053399e-05 17 37087177 37087221 45 - 1.764 2.027 0.885
ENSG00000278540 E009 120.8754480 0.0007804190 4.198923e-10 6.668399e-09 17 37087222 37087319 98 - 1.929 2.189 0.872
ENSG00000278540 E010 138.7149778 0.0053490251 1.351456e-06 1.091391e-05 17 37087320 37087439 120 - 1.984 2.249 0.886
ENSG00000278540 E011 146.4486400 0.0068550048 3.088312e-04 1.415472e-03 17 37088938 37089074 137 - 2.039 2.257 0.727
ENSG00000278540 E012 143.2364594 0.0027630359 6.096403e-03 1.886364e-02 17 37096996 37097166 171 - 2.075 2.223 0.494
ENSG00000278540 E013 148.9588228 0.0002261055 3.372270e-04 1.529276e-03 17 37097830 37097984 155 - 2.092 2.239 0.491
ENSG00000278540 E014 132.5526046 0.0002631639 3.843219e-02 8.816098e-02 17 37111531 37111643 113 - 2.067 2.173 0.354
ENSG00000278540 E015 136.1913935 0.0002611546 3.063985e-01 4.485629e-01 17 37113088 37113265 178 - 2.100 2.173 0.242
ENSG00000278540 E016 134.6447490 0.0002440368 3.566341e-03 1.191655e-02 17 37121355 37121490 136 - 2.059 2.190 0.439
ENSG00000278540 E017 121.1850347 0.0003791769 3.113345e-04 1.425739e-03 17 37122531 37122627 97 - 1.996 2.157 0.538
ENSG00000278540 E018 0.3289534 0.0282331451 9.772596e-01   17 37122628 37122794 167 - 0.120 0.125 0.061
ENSG00000278540 E019 101.1578660 0.0003976611 3.256866e-03 1.102264e-02 17 37125698 37125794 97 - 1.928 2.075 0.492
ENSG00000278540 E020 106.2678173 0.0003071944 3.143709e-02 7.475883e-02 17 37129365 37129485 121 - 1.969 2.085 0.388
ENSG00000278540 E021 109.3300697 0.0003045343 9.408463e-01 9.668244e-01 17 37130075 37130218 144 - 2.022 2.061 0.129
ENSG00000278540 E022 103.4607091 0.0002730497 6.626825e-01 7.709416e-01 17 37149864 37149974 111 - 1.988 2.044 0.188
ENSG00000278540 E023 103.9050279 0.0002618034 9.376127e-01 9.647762e-01 17 37151301 37151421 121 - 1.998 2.041 0.146
ENSG00000278540 E024 77.1273900 0.0010370387 4.836793e-01 6.217116e-01 17 37155683 37155780 98 - 1.886 1.896 0.036
ENSG00000278540 E025 0.1451727 0.0429263894 4.739713e-01   17 37161600 37161780 181 - 0.120 0.000 -22.482
ENSG00000278540 E026 158.7914226 0.0033708634 3.126575e-01 4.551933e-01 17 37161781 37162050 270 - 2.203 2.202 -0.003
ENSG00000278540 E027 117.3631789 0.0002528848 5.551367e-01 6.840259e-01 17 37179260 37179406 147 - 2.062 2.084 0.072
ENSG00000278540 E028 111.1552359 0.0002604233 3.684834e-01 5.129003e-01 17 37181201 37181356 156 - 2.044 2.054 0.035
ENSG00000278540 E029 56.7760165 0.0004281959 4.483001e-03 1.449302e-02 17 37188277 37188302 26 - 1.809 1.717 -0.310
ENSG00000278540 E030 99.7652579 0.0004609563 5.331236e-04 2.283694e-03 17 37188303 37188480 178 - 2.045 1.961 -0.282
ENSG00000278540 E031 91.9719188 0.0127403209 1.864593e-01 3.093102e-01 17 37191120 37191275 156 - 1.987 1.948 -0.133
ENSG00000278540 E032 107.5934991 0.0077590049 1.708717e-01 2.893069e-01 17 37192090 37192305 216 - 2.050 2.022 -0.093
ENSG00000278540 E033 47.6683545 0.0081930223 5.024606e-01 6.385225e-01 17 37193374 37193415 42 - 1.688 1.682 -0.022
ENSG00000278540 E034 0.1482932 0.0414497628 5.055518e-01   17 37193416 37193458 43 - 0.000 0.124 22.324
ENSG00000278540 E035 54.6025733 0.0062221262 5.522535e-02 1.183783e-01 17 37200139 37200183 45 - 1.782 1.705 -0.261
ENSG00000278540 E036 34.7499586 0.0006657644 1.828504e-03 6.691240e-03 17 37200427 37200428 2 - 1.624 1.481 -0.491
ENSG00000278540 E037 56.5495625 0.0067507455 4.444324e-03 1.438320e-02 17 37200429 37200483 55 - 1.826 1.692 -0.450
ENSG00000278540 E038 73.6771337 0.0003472738 1.392219e-04 7.001453e-04 17 37205765 37205872 108 - 1.932 1.816 -0.390
ENSG00000278540 E039 79.5274276 0.0053964511 1.037584e-02 2.968665e-02 17 37206783 37206879 97 - 1.956 1.857 -0.331
ENSG00000278540 E040 75.7879598 0.0108597294 4.785932e-04 2.078112e-03 17 37207657 37207729 73 - 1.978 1.788 -0.642
ENSG00000278540 E041 73.2600425 0.0006647179 1.529671e-06 1.220740e-05 17 37207730 37207800 71 - 1.952 1.791 -0.544
ENSG00000278540 E042 34.6953773 0.0006868361 1.270760e-01 2.300616e-01 17 37210467 37210490 24 - 1.583 1.534 -0.167
ENSG00000278540 E043 0.1482932 0.0414497628 5.055518e-01   17 37221518 37221723 206 - 0.000 0.124 22.324
ENSG00000278540 E044 76.9449906 0.0004026080 1.829956e-04 8.906809e-04 17 37221724 37221842 119 - 1.948 1.837 -0.371
ENSG00000278540 E045 0.1451727 0.0429263894 4.739713e-01   17 37221985 37222028 44 - 0.120 0.000 -22.482
ENSG00000278540 E046 67.7043290 0.0032705219 6.366385e-05 3.493794e-04 17 37223512 37223601 90 - 1.913 1.753 -0.542
ENSG00000278540 E047 74.5114555 0.0080539624 1.019348e-06 8.439489e-06 17 37224992 37225105 114 - 1.992 1.743 -0.838
ENSG00000278540 E048 0.0000000       17 37225400 37225571 172 -      
ENSG00000278540 E049 72.9581909 0.0099818630 8.643735e-06 5.827093e-05 17 37226339 37226452 114 - 1.979 1.746 -0.786
ENSG00000278540 E050 66.9299707 0.0062392629 4.607352e-07 4.103855e-06 17 37234975 37235099 125 - 1.946 1.701 -0.828
ENSG00000278540 E051 54.5528710 0.0017919774 3.041407e-09 4.121029e-08 17 37240476 37240564 89 - 1.865 1.601 -0.896
ENSG00000278540 E052 59.4244901 0.0075031486 6.511362e-04 2.719784e-03 17 37241953 37242053 101 - 1.862 1.695 -0.562
ENSG00000278540 E053 78.6214380 0.0091502141 5.245045e-04 2.251151e-03 17 37243371 37243559 189 - 1.981 1.817 -0.551
ENSG00000278540 E054 61.7420407 0.0279510955 1.047415e-02 2.991732e-02 17 37244588 37244734 147 - 1.882 1.705 -0.596
ENSG00000278540 E055 56.0886086 0.0041004791 3.780153e-05 2.192306e-04 17 37245080 37245214 135 - 1.846 1.659 -0.633
ENSG00000278540 E056 66.5423108 0.0075186339 7.101074e-07 6.089707e-06 17 37246826 37246976 151 - 1.946 1.688 -0.871
ENSG00000278540 E057 0.0000000       17 37247902 37248010 109 -      
ENSG00000278540 E058 69.6534361 0.0144655219 3.661020e-06 2.688357e-05 17 37248011 37248156 146 - 1.981 1.681 -1.012
ENSG00000278540 E059 45.4640267 0.0471157913 9.424558e-03 2.734275e-02 17 37248593 37248674 82 - 1.783 1.523 -0.882
ENSG00000278540 E060 0.1515154 0.0426033290 4.736188e-01   17 37248675 37248676 2 - 0.120 0.000 -22.483
ENSG00000278540 E061 49.2741896 0.0277857482 1.674252e-03 6.200412e-03 17 37252005 37252108 104 - 1.818 1.556 -0.890
ENSG00000278540 E062 66.2383209 0.0263273611 9.346052e-04 3.735235e-03 17 37252886 37253036 151 - 1.945 1.684 -0.880
ENSG00000278540 E063 67.4410732 0.0084288989 8.659966e-06 5.836373e-05 17 37257703 37257866 164 - 1.943 1.709 -0.790
ENSG00000278540 E064 61.1791219 0.0328335976 7.152214e-03 2.161857e-02 17 37258212 37258373 162 - 1.890 1.683 -0.699
ENSG00000278540 E065 58.2100181 0.0199569367 7.228732e-05 3.912636e-04 17 37259360 37259530 171 - 1.898 1.617 -0.951
ENSG00000278540 E066 63.8145953 0.0312635097 1.337834e-04 6.757187e-04 17 37263685 37263894 210 - 1.948 1.642 -1.031
ENSG00000278540 E067 49.0173870 0.0172883867 1.690217e-04 8.309716e-04 17 37270751 37270861 111 - 1.816 1.564 -0.855
ENSG00000278540 E068 32.9319954 0.0119761356 1.099211e-05 7.233897e-05 17 37274193 37274216 24 - 1.668 1.356 -1.072
ENSG00000278540 E069 44.3986045 0.0152540760 9.776227e-07 8.127065e-06 17 37274217 37274299 83 - 1.809 1.458 -1.196
ENSG00000278540 E070 46.3750648 0.0116530919 4.212448e-06 3.047333e-05 17 37275951 37276049 99 - 1.809 1.506 -1.030
ENSG00000278540 E071 40.7034277 0.0180931819 5.630740e-04 2.395848e-03 17 37277033 37277114 82 - 1.735 1.480 -0.868
ENSG00000278540 E072 47.3470901 0.0108469608 4.034118e-06 2.931312e-05 17 37277896 37277987 92 - 1.816 1.525 -0.986
ENSG00000278540 E073 29.7940634 0.0009759748 1.107537e-08 1.354198e-07 17 37277988 37278005 18 - 1.637 1.307 -1.138
ENSG00000278540 E074 53.5873720 0.0025778429 9.680219e-11 1.712154e-09 17 37283267 37283405 139 - 1.877 1.570 -1.038
ENSG00000278540 E075 52.8866062 0.0004561850 5.787687e-16 2.257019e-14 17 37284838 37284970 133 - 1.889 1.530 -1.217
ENSG00000278540 E076 7.8064248 0.0029953736 1.969727e-05 1.223713e-04 17 37289418 37289528 111 - 1.138 0.668 -1.802
ENSG00000278540 E077 0.4783925 0.0221900365 5.396178e-01 6.708613e-01 17 37299280 37299767 488 - 0.214 0.125 -0.939
ENSG00000278540 E078 44.7340394 0.0228262366 2.977446e-05 1.773465e-04 17 37328645 37328961 317 - 1.385 1.809 1.445
ENSG00000278540 E079 28.5225426 0.0284149769 1.939042e-02 5.018041e-02 17 37328962 37328986 25 - 1.297 1.583 0.986
ENSG00000278540 E080 112.2253150 0.0042804261 1.202278e-01 2.203232e-01 17 37330173 37330335 163 - 2.073 2.038 -0.115
ENSG00000278540 E081 74.3751770 0.0081039906 2.289766e-01 3.612186e-01 17 37330336 37330425 90 - 1.896 1.857 -0.132
ENSG00000278540 E082 45.9165708 0.0057307528 3.641539e-01 5.085258e-01 17 37339804 37339819 16 - 1.677 1.657 -0.068
ENSG00000278540 E083 50.8744881 0.0024743100 5.516892e-02 1.182841e-01 17 37339820 37339850 31 - 1.744 1.681 -0.215
ENSG00000278540 E084 2.2830798 0.0064664260 6.663669e-01 7.738166e-01 17 37345253 37345382 130 - 0.464 0.563 0.475
ENSG00000278540 E085 45.5963766 0.0046764952 2.476709e-01 3.832092e-01 17 37358999 37359233 235 - 1.683 1.650 -0.112
ENSG00000278540 E086 0.0000000       17 37360205 37360232 28 -      
ENSG00000278540 E087 0.1817044 0.0383749681 5.053530e-01   17 37360233 37360391 159 - 0.000 0.125 22.329
ENSG00000278540 E088 0.4407149 0.0229210063 5.402669e-01 6.714244e-01 17 37365443 37365750 308 - 0.214 0.124 -0.941
ENSG00000278540 E089 0.0000000       17 37366943 37367060 118 -      
ENSG00000278540 E090 0.2965864 0.2204247239 2.662501e-01   17 37367592 37367722 131 - 0.000 0.217 23.295
ENSG00000278540 E091 0.0000000       17 37368699 37368727 29 -      
ENSG00000278540 E092 0.1817044 0.0383749681 5.053530e-01   17 37369370 37369487 118 - 0.000 0.125 22.329
ENSG00000278540 E093 52.6820650 0.0004530928 1.023779e-01 1.941440e-01 17 37406262 37406836 575 - 1.659 1.779 0.407