ENSG00000278259

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000614623 ENSG00000278259 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO19 protein_coding protein_coding 24.25684 29.95716 19.56764 1.023885 0.2312567 -0.6141754 7.573756 9.572505 5.076210 0.34601349 0.06787061 -0.9138117 0.3090792 0.3202000 0.2595000 -0.06070000 0.122177212 0.003108196 FALSE  
ENST00000620567 ENSG00000278259 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO19 protein_coding retained_intron 24.25684 29.95716 19.56764 1.023885 0.2312567 -0.6141754 3.353262 5.372116 2.051287 1.16132802 0.20658240 -1.3846281 0.1327458 0.1777333 0.1050333 -0.07270000 0.298856580 0.003108196 FALSE  
ENST00000621344 ENSG00000278259 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO19 protein_coding protein_coding 24.25684 29.95716 19.56764 1.023885 0.2312567 -0.6141754 4.588224 8.028350 3.630743 0.08530135 0.20184340 -1.1426666 0.1852292 0.2687333 0.1857000 -0.08303333 0.009619147 0.003108196 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000278259 E001 0.2987644 0.0273932154 7.555489e-02   17 36494558 36494819 262 - 0.279 0.000 -11.837
ENSG00000278259 E002 2.1861807 0.0082768534 7.468664e-01 8.345224e-01 17 36494996 36495635 640 - 0.512 0.460 -0.258
ENSG00000278259 E003 0.8502072 0.0143250879 7.874445e-01 8.638773e-01 17 36495636 36495637 2 - 0.279 0.232 -0.351
ENSG00000278259 E004 0.8502072 0.0143250879 7.874445e-01 8.638773e-01 17 36495638 36495639 2 - 0.279 0.232 -0.351
ENSG00000278259 E005 19.2546391 0.0046195554 9.656111e-05 5.059104e-04 17 36495640 36495754 115 - 0.959 1.352 1.406
ENSG00000278259 E006 98.4228598 0.0024688686 6.596177e-02 1.366372e-01 17 36495755 36495932 178 - 1.899 1.988 0.297
ENSG00000278259 E007 232.5396090 0.0057739973 4.998324e-01 6.360955e-01 17 36495933 36496184 252 - 2.305 2.343 0.127
ENSG00000278259 E008 192.0916897 0.0083291952 5.593922e-01 6.874988e-01 17 36496185 36496406 222 - 2.220 2.260 0.133
ENSG00000278259 E009 147.4774630 0.0012007807 1.391033e-02 3.802369e-02 17 36498266 36498554 289 - 2.067 2.159 0.307
ENSG00000278259 E010 35.1190173 0.0245877838 4.286491e-01 5.713786e-01 17 36498555 36498559 5 - 1.462 1.541 0.270
ENSG00000278259 E011 7.2930333 0.0044363723 2.079076e-06 1.611511e-05 17 36498560 36498883 324 - 1.188 0.633 -2.129
ENSG00000278259 E012 80.8271638 0.0003632238 1.513106e-01 2.634559e-01 17 36499075 36499160 86 - 1.824 1.889 0.219
ENSG00000278259 E013 12.2245765 0.0124534948 6.211387e-01 7.381543e-01 17 36499161 36499344 184 - 1.038 1.099 0.223
ENSG00000278259 E014 31.0261896 0.0183041279 3.075309e-03 1.048799e-02 17 36499670 36500829 1160 - 1.637 1.380 -0.880
ENSG00000278259 E015 108.4352953 0.0002907301 4.087540e-01 5.523734e-01 17 36500830 36500959 130 - 2.017 1.991 -0.088
ENSG00000278259 E016 99.3293120 0.0003269381 5.272022e-02 1.139913e-01 17 36501069 36501165 97 - 2.008 1.939 -0.231
ENSG00000278259 E017 94.7621201 0.0009010520 1.527775e-01 2.654393e-01 17 36501166 36501235 70 - 1.980 1.927 -0.178
ENSG00000278259 E018 4.7971723 0.0034170382 1.313669e-02 3.622256e-02 17 36501236 36501768 533 - 0.937 0.608 -1.323
ENSG00000278259 E019 1.7692009 0.1394348897 3.111176e-01 4.535579e-01 17 36501852 36501901 50 - 0.568 0.337 -1.203
ENSG00000278259 E020 2.6235716 0.0567893756 5.211127e-01 6.550108e-01 17 36501902 36501961 60 - 0.447 0.579 0.633
ENSG00000278259 E021 3.4051734 0.0059787289 2.930833e-03 1.006066e-02 17 36502815 36503096 282 - 0.863 0.423 -1.935
ENSG00000278259 E022 102.3871717 0.0007751272 9.730369e-01 9.871686e-01 17 36503097 36503200 104 - 1.974 1.979 0.018
ENSG00000278259 E023 65.9077491 0.0004057385 7.137600e-01 8.101499e-01 17 36503950 36504012 63 - 1.775 1.795 0.069
ENSG00000278259 E024 43.8474565 0.0005269295 9.865606e-01 9.956527e-01 17 36504013 36504020 8 - 1.609 1.613 0.015
ENSG00000278259 E025 26.4346060 0.0012619202 4.981926e-04 2.153295e-03 17 36504021 36504901 881 - 1.552 1.317 -0.811
ENSG00000278259 E026 8.8571956 0.0366847009 1.925634e-02 4.989135e-02 17 36504902 36505154 253 - 1.162 0.848 -1.160
ENSG00000278259 E027 5.3657944 0.0840358534 1.630308e-01 2.790893e-01 17 36505155 36505177 23 - 0.938 0.677 -1.032
ENSG00000278259 E028 7.5891628 0.0032406923 3.757799e-03 1.246199e-02 17 36505178 36505296 119 - 1.104 0.774 -1.244
ENSG00000278259 E029 77.5888230 0.0005148826 9.860295e-01 9.952811e-01 17 36505297 36505396 100 - 1.853 1.855 0.009
ENSG00000278259 E030 38.8733921 0.0071154852 6.863718e-01 7.888964e-01 17 36505397 36505404 8 - 1.579 1.553 -0.086
ENSG00000278259 E031 81.7243419 0.0003496133 3.640089e-01 5.084187e-01 17 36506456 36506608 153 - 1.904 1.870 -0.115
ENSG00000278259 E032 0.0000000       17 36506609 36506806 198 -      
ENSG00000278259 E033 102.4024328 0.0038328970 7.625790e-01 8.461502e-01 17 36506963 36507139 177 - 1.982 1.972 -0.033
ENSG00000278259 E034 53.2906570 0.0028009858 5.726182e-01 6.986906e-01 17 36507399 36507422 24 - 1.715 1.687 -0.095
ENSG00000278259 E035 81.7116988 0.0003743973 9.025965e-01 9.419752e-01 17 36507423 36507512 90 - 1.871 1.880 0.029
ENSG00000278259 E036 1.3349293 0.0104843288 3.628088e-01 5.072287e-01 17 36507513 36507617 105 - 0.447 0.288 -0.936
ENSG00000278259 E037 4.3166984 0.0041696693 5.165309e-01 6.510833e-01 17 36507791 36507802 12 - 0.618 0.719 0.427
ENSG00000278259 E038 45.7241649 0.0004845959 9.544529e-01 9.754601e-01 17 36507803 36507832 30 - 1.632 1.632 0.001
ENSG00000278259 E039 39.4461051 0.0006612462 2.594635e-01 3.968528e-01 17 36507833 36507842 10 - 1.609 1.546 -0.215
ENSG00000278259 E040 68.8749632 0.0035130249 2.312443e-01 3.639671e-01 17 36507843 36507924 82 - 1.844 1.784 -0.202
ENSG00000278259 E041 8.4438032 0.0267605960 4.108831e-05 2.362169e-04 17 36507925 36508896 972 - 1.235 0.700 -2.013
ENSG00000278259 E042 3.1366099 0.0207460114 2.619360e-01 3.996568e-01 17 36508897 36509061 165 - 0.703 0.525 -0.784
ENSG00000278259 E043 41.4342867 0.0121538399 1.479701e-01 2.589152e-01 17 36509062 36509066 5 - 1.662 1.552 -0.376
ENSG00000278259 E044 59.8218100 0.0039077341 5.353839e-01 6.672349e-01 17 36509067 36509135 69 - 1.764 1.732 -0.108
ENSG00000278259 E045 0.2934659 0.0293018153 6.313656e-01   17 36509136 36509922 787 - 0.161 0.092 -0.938
ENSG00000278259 E046 83.5599837 0.0003663723 2.566310e-01 3.936133e-01 17 36510746 36510917 172 - 1.916 1.873 -0.145
ENSG00000278259 E047 11.6427532 0.0015792342 8.350014e-06 5.648389e-05 17 36510918 36511206 289 - 1.309 0.880 -1.554
ENSG00000278259 E048 10.0862507 0.0031496728 7.157614e-05 3.878131e-04 17 36511207 36511364 158 - 1.247 0.838 -1.500
ENSG00000278259 E049 56.0360475 0.0011930017 1.696442e-01 2.877379e-01 17 36511365 36511455 91 - 1.758 1.691 -0.226
ENSG00000278259 E050 7.5301859 0.0508599481 8.068508e-01 8.773200e-01 17 36512658 36512779 122 - 0.914 0.884 -0.112
ENSG00000278259 E051 4.7019955 0.1612795211 2.277209e-01 3.596856e-01 17 36512874 36513085 212 - 0.864 0.641 -0.901
ENSG00000278259 E052 25.0546786 0.0049395585 1.612225e-03 5.999786e-03 17 36513086 36513165 80 - 1.175 1.451 0.964
ENSG00000278259 E053 106.3869048 0.0080036945 1.886736e-03 6.872986e-03 17 36513166 36513428 263 - 1.855 2.043 0.630
ENSG00000278259 E054 141.2119658 0.0002869446 8.493489e-03 2.502124e-02 17 36513429 36513505 77 - 2.048 2.138 0.302
ENSG00000278259 E055 159.9862279 0.0065958552 2.040926e-03 7.353436e-03 17 36513629 36513725 97 - 2.050 2.210 0.535
ENSG00000278259 E056 170.6155850 0.0001996504 3.621563e-03 1.207254e-02 17 36514446 36514548 103 - 2.131 2.221 0.301
ENSG00000278259 E057 141.3743741 0.0002279712 4.775534e-03 1.530476e-02 17 36515113 36515182 70 - 2.045 2.141 0.321
ENSG00000278259 E058 101.7963019 0.0021013110 8.540102e-01 9.096666e-01 17 36515858 36515874 17 - 1.961 1.973 0.039
ENSG00000278259 E059 111.9848466 0.0006245235 8.783278e-01 9.258656e-01 17 36515875 36515917 43 - 2.006 2.015 0.030
ENSG00000278259 E060 128.8494533 0.0002867377 9.385052e-01 9.653961e-01 17 36515918 36515990 73 - 2.072 2.073 0.003
ENSG00000278259 E061 148.3208205 0.0036388722 7.482170e-01 8.354993e-01 17 36525228 36525341 114 - 2.145 2.136 -0.030
ENSG00000278259 E062 137.2652159 0.0027309091 9.145154e-01 9.498945e-01 17 36527551 36527653 103 - 2.099 2.107 0.028
ENSG00000278259 E063 97.6690059 0.0028100750 9.504121e-01 9.729687e-01 17 36527654 36527699 46 - 1.953 1.959 0.021
ENSG00000278259 E064 81.0296303 0.0029939656 6.414562e-01 7.544949e-01 17 36528064 36528080 17 - 1.892 1.874 -0.061
ENSG00000278259 E065 146.7062382 0.0034590489 4.140867e-01 5.574919e-01 17 36528081 36528202 122 - 2.152 2.123 -0.097
ENSG00000278259 E066 141.9598497 0.0020131971 1.527851e-01 2.654476e-01 17 36532527 36532647 121 - 2.151 2.101 -0.165
ENSG00000278259 E067 72.5238283 0.0005104675 4.219428e-01 5.650971e-01 17 36532648 36532681 34 - 1.847 1.815 -0.109
ENSG00000278259 E068 0.7717446 0.2187802945 3.625594e-01 5.069698e-01 17 36533160 36533291 132 - 0.371 0.166 -1.533
ENSG00000278259 E069 0.7707005 0.6295262624 2.915071e-01 4.323787e-01 17 36533292 36533423 132 - 0.447 0.092 -2.924
ENSG00000278259 E070 0.6244956 0.0423149963 5.269852e-01 6.601618e-01 17 36533424 36533608 185 - 0.279 0.167 -0.939
ENSG00000278259 E071 0.1817044 0.0401954685 9.320894e-01   17 36533922 36533952 31 - 0.000 0.092 10.235
ENSG00000278259 E072 126.3924160 0.0017249625 7.754332e-02 1.555143e-01 17 36533953 36534104 152 - 2.108 2.045 -0.212
ENSG00000278259 E073 1.1760376 0.0132733252 4.979809e-02 1.088006e-01 17 36534105 36534219 115 - 0.000 0.383 12.822
ENSG00000278259 E074 1.4329848 0.0105138775 5.782925e-01 7.034214e-01 17 36534673 36534683 11 - 0.279 0.383 0.651
ENSG00000278259 E075 3.9678005 0.0045271740 6.267960e-01 7.426830e-01 17 36534684 36534760 77 - 0.703 0.633 -0.297
ENSG00000278259 E076 71.1699810 0.0004272011 1.950623e-02 5.042502e-02 17 36534761 36535251 491 - 1.884 1.786 -0.333
ENSG00000278259 E077 2.2456031 0.0080793850 3.814520e-01 5.257390e-01 17 36535252 36535633 382 - 0.568 0.423 -0.711
ENSG00000278259 E078 0.8502072 0.0143250879 7.874445e-01 8.638773e-01 17 36542081 36542165 85 - 0.279 0.232 -0.351
ENSG00000278259 E079 0.2998086 0.0292530282 6.302091e-01   17 36542166 36542243 78 - 0.161 0.092 -0.939
ENSG00000278259 E080 1.3619092 0.0099383503 5.798557e-01 7.046920e-01 17 36543126 36543435 310 - 0.279 0.382 0.649