ENSG00000263072

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000570901 ENSG00000263072 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 15.91951 22.47222 11.40367 1.545364 0.5120285 -0.978022 1.088895 1.937976 0.6329587 0.42980332 0.0131015 -1.5991782 0.06474583 0.08446667 0.05576667 -0.02870000 4.061593e-01 1.479061e-15   FALSE
ENST00000571963 ENSG00000263072 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 15.91951 22.47222 11.40367 1.545364 0.5120285 -0.978022 1.534999 3.890428 0.0000000 0.65828460 0.0000000 -8.6074888 0.08057917 0.17476667 0.00000000 -0.17476667 1.479061e-15 1.479061e-15   FALSE
ENST00000575089 ENSG00000263072 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 15.91951 22.47222 11.40367 1.545364 0.5120285 -0.978022 4.858015 4.917824 4.5344143 0.77317788 0.5447260 -0.1168564 0.31596667 0.21763333 0.39550000 0.17786667 6.032386e-03 1.479061e-15   FALSE
ENST00000576943 ENSG00000263072 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 15.91951 22.47222 11.40367 1.545364 0.5120285 -0.978022 1.113458 2.250014 1.3352920 0.07876387 0.2983557 -0.7484125 0.07148750 0.10073333 0.11543333 0.01470000 8.377602e-01 1.479061e-15 FALSE TRUE
ENST00000653148 ENSG00000263072 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 15.91951 22.47222 11.40367 1.545364 0.5120285 -0.978022 1.448672 1.868825 0.8408140 0.07476867 0.1835635 -1.1429150 0.09110417 0.08363333 0.07350000 -0.01013333 8.201522e-01 1.479061e-15   FALSE
ENST00000658602 ENSG00000263072 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 15.91951 22.47222 11.40367 1.545364 0.5120285 -0.978022 1.104910 1.165314 0.8497506 0.35013402 0.2926298 -0.4510558 0.07305417 0.05213333 0.07710000 0.02496667 8.071780e-01 1.479061e-15   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000263072 E001 0.1515154 0.0425819659 1.949110e-01   16 3100696 3100716 21 - 0.180 0.000 -11.005
ENSG00000263072 E002 4.9228393 0.0131698322 2.133313e-04 1.021122e-03 16 3100717 3101477 761 - 1.032 0.515 -2.105
ENSG00000263072 E003 3.1398176 0.0223557758 1.828650e-01 3.047781e-01 16 3110460 3110511 52 - 0.709 0.487 -0.990
ENSG00000263072 E004 2.8430553 0.0056290324 5.662718e-01 6.932777e-01 16 3110512 3110518 7 - 0.611 0.514 -0.445
ENSG00000263072 E005 9.9213764 0.0256524840 9.537074e-01 9.749987e-01 16 3110519 3110793 275 - 0.989 0.976 -0.048
ENSG00000263072 E006 15.2185923 0.0012338316 7.537733e-01 8.395856e-01 16 3110794 3110954 161 - 1.173 1.139 -0.120
ENSG00000263072 E007 17.7779120 0.0011255467 5.874901e-02 1.244807e-01 16 3112283 3112489 207 - 1.323 1.158 -0.582
ENSG00000263072 E008 3.1492067 0.0280620971 4.756134e-01 6.143256e-01 16 3112577 3112935 359 - 0.663 0.540 -0.547
ENSG00000263072 E009 2.7399179 0.0239849553 3.929931e-03 1.294581e-02 16 3112936 3113206 271 - 0.823 0.350 -2.193
ENSG00000263072 E010 1.4080959 0.0570943755 2.906543e-02 7.013307e-02 16 3113207 3113265 59 - 0.611 0.209 -2.324
ENSG00000263072 E011 7.7023170 0.0487894003 9.953027e-02 1.897678e-01 16 3113266 3114794 1529 - 1.053 0.804 -0.940
ENSG00000263072 E012 3.8236615 0.0043293501 5.811409e-02 1.233990e-01 16 3114795 3114882 88 - 0.823 0.541 -1.193
ENSG00000263072 E013 1.7306034 0.0083070402 9.359621e-01 9.637220e-01 16 3114883 3114887 5 - 0.405 0.388 -0.096
ENSG00000263072 E014 15.3215681 0.0013013717 8.289883e-05 4.417703e-04 16 3114968 3116125 1158 - 1.383 1.037 -1.226
ENSG00000263072 E015 4.8059206 0.0096065178 1.696261e-04 8.334672e-04 16 3116126 3116281 156 - 1.032 0.514 -2.108
ENSG00000263072 E016 5.5930804 0.0029860403 8.407214e-06 5.682203e-05 16 3116282 3116455 174 - 1.108 0.541 -2.258
ENSG00000263072 E017 2.5671973 0.0173034388 7.483670e-03 2.247058e-02 16 3116456 3116519 64 - 0.788 0.350 -2.054
ENSG00000263072 E018 0.5514428 0.0196954179 3.355496e-01 4.793301e-01 16 3123756 3123756 1 - 0.000 0.209 12.547
ENSG00000263072 E019 1.6961600 0.0081333665 5.287598e-01 6.616465e-01 16 3123757 3123989 233 - 0.307 0.423 0.680
ENSG00000263072 E020 3.7037568 0.0551681272 9.259773e-01 9.573853e-01 16 3123990 3124486 497 - 0.612 0.631 0.085
ENSG00000263072 E021 3.4215797 0.0091490325 9.104439e-01 9.470362e-01 16 3124487 3124830 344 - 0.611 0.589 -0.096
ENSG00000263072 E022 1.2512805 0.0112051035 9.877328e-01 9.964058e-01 16 3124831 3124898 68 - 0.307 0.308 0.004
ENSG00000263072 E023 0.8438645 0.0142843793 5.968384e-01 7.187116e-01 16 3125529 3125530 2 - 0.307 0.209 -0.734
ENSG00000263072 E024 2.1660197 0.0066937364 8.782675e-01 9.258240e-01 16 3125531 3125582 52 - 0.485 0.455 -0.150
ENSG00000263072 E025 3.8246885 0.0085039817 3.112202e-01 4.536731e-01 16 3125583 3125598 16 - 0.485 0.654 0.772
ENSG00000263072 E026 4.5254686 0.0039740623 4.556184e-02 1.012262e-01 16 3125599 3125599 1 - 0.405 0.743 1.556
ENSG00000263072 E027 8.8702691 0.0278856219 6.511777e-01 7.621163e-01 16 3125600 3125810 211 - 0.885 0.948 0.237
ENSG00000263072 E028 0.4417591 0.1087019800 8.467472e-01 9.047638e-01 16 3125811 3125813 3 - 0.180 0.148 -0.336
ENSG00000263072 E029 0.5932745 0.0205835398 3.766543e-01 5.209686e-01 16 3125814 3125814 1 - 0.307 0.150 -1.323
ENSG00000263072 E030 1.2919663 0.0104767145 5.992859e-01 7.207158e-01 16 3125815 3125818 4 - 0.405 0.307 -0.584
ENSG00000263072 E031 1.8434090 0.0078295548 9.121530e-01 9.483142e-01 16 3125819 3125820 2 - 0.405 0.423 0.095
ENSG00000263072 E032 10.5213272 0.0016831721 1.047864e-01 1.977830e-01 16 3125821 3125882 62 - 0.855 1.045 0.710
ENSG00000263072 E033 16.1378694 0.0054188007 1.047125e-01 1.976855e-01 16 3125883 3125962 80 - 1.052 1.215 0.585
ENSG00000263072 E034 10.0612986 0.1376674077 5.330166e-01 6.652691e-01 16 3125963 3125966 4 - 0.912 1.016 0.389
ENSG00000263072 E035 23.6481786 0.0154459739 9.531313e-04 3.798722e-03 16 3126386 3128671 2286 - 1.537 1.236 -1.045
ENSG00000263072 E036 5.1669917 0.0574381095 6.781913e-01 7.827306e-01 16 3128672 3128861 190 - 0.663 0.747 0.351
ENSG00000263072 E037 81.9850570 0.0003740986 8.666029e-10 1.299164e-08 16 3128862 3129247 386 - 1.619 1.911 0.988
ENSG00000263072 E038 60.4470734 0.0033290073 8.222211e-04 3.338777e-03 16 3129248 3129310 63 - 1.574 1.770 0.667
ENSG00000263072 E039 74.5930645 0.0003812077 1.260709e-03 4.845557e-03 16 3129311 3129457 147 - 1.698 1.847 0.503
ENSG00000263072 E040 28.4069393 0.0007929549 3.020102e-02 7.236442e-02 16 3129458 3129460 3 - 1.279 1.441 0.563
ENSG00000263072 E041 94.4410784 0.0003275828 7.139740e-05 3.869885e-04 16 3129461 3129653 193 - 1.786 1.950 0.552
ENSG00000263072 E042 27.7292719 0.0044446185 8.549969e-03 2.516580e-02 16 3129654 3130160 507 - 1.215 1.436 0.768
ENSG00000263072 E043 1.5780453 0.0119796574 1.663373e-01 2.834306e-01 16 3131405 3131457 53 - 0.553 0.307 -1.321
ENSG00000263072 E044 0.8126314 0.0153787590 1.911657e-02 4.959299e-02 16 3131458 3131462 5 - 0.485 0.081 -3.318
ENSG00000263072 E045 5.0844898 0.0248391172 9.722470e-01 9.866842e-01 16 3131463 3131600 138 - 0.709 0.714 0.020
ENSG00000263072 E046 2.9369186 0.0325582845 7.373534e-01 8.275628e-01 16 3131601 3131666 66 - 0.485 0.544 0.282
ENSG00000263072 E047 11.1256033 0.0030109975 6.788006e-01 7.831838e-01 16 3131667 3131746 80 - 1.052 1.003 -0.180
ENSG00000263072 E048 114.6027043 0.0003407397 5.618675e-01 6.895880e-01 16 3131747 3131921 175 - 1.983 2.000 0.057
ENSG00000263072 E049 91.6225108 0.0040177931 5.936317e-01 7.160096e-01 16 3131922 3132018 97 - 1.920 1.893 -0.091
ENSG00000263072 E050 88.5735637 0.0024738130 9.024823e-01 9.418918e-01 16 3132019 3132103 85 - 1.884 1.887 0.011
ENSG00000263072 E051 22.8302570 0.0066347540 7.978540e-01 8.710038e-01 16 3132104 3132322 219 - 1.302 1.322 0.070
ENSG00000263072 E052 19.9411565 0.0038572500 7.287475e-01 8.211355e-01 16 3132323 3132849 527 - 1.279 1.244 -0.122
ENSG00000263072 E053 17.0955063 0.0010973692 2.544896e-02 6.280318e-02 16 3132850 3132942 93 - 1.334 1.139 -0.687
ENSG00000263072 E054 8.6941101 0.0020078616 9.010410e-03 2.630558e-02 16 3132943 3132945 3 - 1.125 0.831 -1.096
ENSG00000263072 E055 24.9514368 0.0013523973 2.346783e-02 5.871767e-02 16 3132946 3133194 249 - 1.474 1.304 -0.587
ENSG00000263072 E056 18.8579973 0.0116458041 4.384543e-02 9.810188e-02 16 3133195 3133367 173 - 1.373 1.178 -0.685
ENSG00000263072 E057 16.1829927 0.0230945863 2.863572e-02 6.928063e-02 16 3133368 3133709 342 - 1.334 1.091 -0.862
ENSG00000263072 E058 13.6734603 0.0047496110 2.034687e-02 5.221269e-02 16 3134509 3134629 121 - 1.267 1.037 -0.821
ENSG00000263072 E059 28.8083749 0.0007580253 2.930632e-01 4.340955e-01 16 3134630 3134633 4 - 1.467 1.389 -0.267
ENSG00000263072 E060 93.9719711 0.0003644207 1.410051e-01 2.494071e-01 16 3134634 3134892 259 - 1.956 1.895 -0.207
ENSG00000263072 E061 1.8349885 0.0085779436 1.503238e-01 2.621151e-01 16 3142806 3143603 798 - 0.180 0.456 1.852
ENSG00000263072 E062 0.5911836 0.0248957616 3.369220e-01 4.807839e-01 16 3143604 3143734 131 - 0.000 0.209 12.526