ENSG00000261824

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000655166 ENSG00000261824 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC00662 lncRNA lncRNA 7.169697 5.820728 8.031705 0.5745633 0.3201281 0.4638253 0.8750164 0.81012240 0.7939021 0.409932194 0.26654274 -0.02881948 0.13132083 0.135600000 0.10080000 -0.034800000 1.000000e+00 5.265427e-06    
ENST00000659734 ENSG00000261824 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC00662 lncRNA lncRNA 7.169697 5.820728 8.031705 0.5745633 0.3201281 0.4638253 0.4730104 0.37854668 0.4346280 0.137014072 0.14420325 0.19451072 0.06740833 0.061900000 0.05293333 -0.008966667 8.557804e-01 5.265427e-06    
ENST00000660418 ENSG00000261824 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC00662 lncRNA lncRNA 7.169697 5.820728 8.031705 0.5745633 0.3201281 0.4638253 0.8365786 0.93534104 1.0288131 0.283284677 0.08814821 0.13602929 0.12194167 0.154666667 0.12833333 -0.026333333 7.538861e-01 5.265427e-06    
ENST00000668933 ENSG00000261824 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC00662 lncRNA lncRNA 7.169697 5.820728 8.031705 0.5745633 0.3201281 0.4638253 0.1641833 0.01753673 0.4610286 0.009816328 0.02328974 4.09638542 0.02047083 0.003033333 0.05760000 0.054566667 5.265427e-06 5.265427e-06    
ENST00000687807 ENSG00000261824 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC00662 lncRNA lncRNA 7.169697 5.820728 8.031705 0.5745633 0.3201281 0.4638253 0.1083438 0.27944393 0.0000000 0.279443928 0.00000000 -4.85521199 0.01725417 0.054166667 0.00000000 -0.054166667 7.681100e-01 5.265427e-06    
ENST00000690193 ENSG00000261824 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC00662 lncRNA lncRNA 7.169697 5.820728 8.031705 0.5745633 0.3201281 0.4638253 2.1210232 2.01214009 2.5852945 0.180680543 0.18148944 0.36001529 0.29477083 0.347300000 0.32303333 -0.024266667 8.676043e-01 5.265427e-06    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000261824 E001 0.0000000       19 27681072 27681084 13 -      
ENSG00000261824 E002 0.0000000       19 27681085 27681215 131 -      
ENSG00000261824 E003 0.0000000       19 27681216 27681255 40 -      
ENSG00000261824 E004 0.4513240 0.1973176135 8.023305e-01 8.740755e-01 19 27681256 27681355 100 - 0.191 0.140 -0.545
ENSG00000261824 E005 0.1451727 0.0427813551 6.730923e-01   19 27681731 27681743 13 - 0.106 0.000 -12.447
ENSG00000261824 E006 0.3666179 0.0296443562 8.046727e-01 8.757106e-01 19 27681744 27681898 155 - 0.106 0.141 0.478
ENSG00000261824 E007 3.2818869 0.0052105322 8.821214e-02 1.723993e-01 19 27681899 27683583 1685 - 0.734 0.465 -1.203
ENSG00000261824 E008 0.5997190 0.1771110452 1.126149e-01 2.093655e-01 19 27684506 27684516 11 - 0.324 0.000 -13.961
ENSG00000261824 E009 0.5997190 0.1771110452 1.126149e-01 2.093655e-01 19 27684517 27684579 63 - 0.324 0.000 -13.961
ENSG00000261824 E010 0.1515154 0.0431131903 6.720026e-01   19 27684580 27684607 28 - 0.106 0.000 -12.447
ENSG00000261824 E011 0.0000000       19 27684608 27684694 87 -      
ENSG00000261824 E012 0.8147077 0.1852164866 3.921428e-01 5.360900e-01 19 27684695 27685056 362 - 0.323 0.143 -1.508
ENSG00000261824 E013 1.4833243 0.0112565419 6.079523e-01 7.278346e-01 19 27685057 27685275 219 - 0.424 0.333 -0.524
ENSG00000261824 E014 0.7771569 0.0155014278 3.090542e-01 4.513451e-01 19 27685364 27686332 969 - 0.323 0.141 -1.525
ENSG00000261824 E015 0.4502799 0.0367861771 1.536248e-01 2.665985e-01 19 27686872 27686998 127 - 0.262 0.000 -13.827
ENSG00000261824 E016 3.6138456 0.1170534570 7.872669e-01 8.637603e-01 19 27697254 27699328 2075 - 0.687 0.616 -0.306
ENSG00000261824 E017 2.3271913 0.0062623565 7.628117e-02 1.535569e-01 19 27699329 27701490 2162 - 0.635 0.333 -1.525
ENSG00000261824 E018 1.1114078 0.0125403172 9.595000e-01 9.785654e-01 19 27701491 27701645 155 - 0.323 0.332 0.059
ENSG00000261824 E019 0.1451727 0.0427813551 6.730923e-01   19 27712347 27713134 788 - 0.106 0.000 -12.447
ENSG00000261824 E020 0.3666179 0.0296443562 8.046727e-01 8.757106e-01 19 27713135 27713551 417 - 0.106 0.141 0.478
ENSG00000261824 E021 4.8472452 0.0173484346 6.264544e-01 7.423998e-01 19 27713552 27714891 1340 - 0.795 0.719 -0.309
ENSG00000261824 E022 4.0737951 0.0039791021 4.925679e-04 2.131805e-03 19 27714892 27715576 685 - 0.882 0.333 -2.526
ENSG00000261824 E023 0.5181333 0.0214435182 7.827777e-01 8.605336e-01 19 27715577 27715579 3 - 0.191 0.141 -0.523
ENSG00000261824 E024 3.3883353 0.0660539459 5.376259e-01 6.691563e-01 19 27715580 27715858 279 - 0.687 0.569 -0.514
ENSG00000261824 E025 0.3299976 0.0274424043 1.252160e-01   19 27721702 27721719 18 - 0.000 0.247 12.874
ENSG00000261824 E026 2.1724642 0.0072438620 3.878863e-01 5.320063e-01 19 27721720 27721744 25 - 0.424 0.567 0.698
ENSG00000261824 E027 2.1724642 0.0072438620 3.878863e-01 5.320063e-01 19 27721745 27721745 1 - 0.424 0.567 0.698
ENSG00000261824 E028 2.4993413 0.0066806721 3.735278e-01 5.179626e-01 19 27721746 27721746 1 - 0.467 0.610 0.668
ENSG00000261824 E029 4.7928161 0.0035438320 1.096334e-01 2.050261e-01 19 27721747 27721815 69 - 0.662 0.876 0.860
ENSG00000261824 E030 4.0079256 0.0467480536 4.594895e-01 5.996349e-01 19 27721816 27722309 494 - 0.756 0.645 -0.460
ENSG00000261824 E031 0.7447899 0.0378432117 9.208113e-01 9.540591e-01 19 27722310 27722373 64 - 0.262 0.246 -0.117
ENSG00000261824 E032 4.9564726 0.0033389980 3.465650e-06 2.559677e-05 19 27722374 27723028 655 - 0.980 0.247 -3.480
ENSG00000261824 E033 1.9240417 0.0072578620 6.050905e-03 1.874460e-02 19 27723029 27723180 152 - 0.635 0.141 -3.111
ENSG00000261824 E034 20.8322296 0.0009125795 3.026441e-18 1.569962e-16 19 27723181 27726392 3212 - 1.554 0.748 -2.918
ENSG00000261824 E035 1.7328847 0.0081333665 9.871411e-02 1.885305e-01 19 27726393 27726482 90 - 0.542 0.247 -1.694
ENSG00000261824 E036 3.4407798 0.0045858958 3.777013e-05 2.190619e-04 19 27726483 27726986 504 - 0.850 0.141 -3.985
ENSG00000261824 E037 0.5922303 0.0179738337 4.898428e-01 6.272218e-01 19 27727387 27727398 12 - 0.262 0.141 -1.112
ENSG00000261824 E038 5.8475313 0.0096635834 1.632651e-01 2.794147e-01 19 27727399 27727783 385 - 0.755 0.937 0.704
ENSG00000261824 E039 1.1707416 0.0118100235 4.184744e-01 5.617346e-01 19 27727784 27727802 19 - 0.262 0.404 0.890
ENSG00000261824 E040 0.9890372 0.0132915648 6.880825e-01 7.902804e-01 19 27727803 27727816 14 - 0.262 0.333 0.475
ENSG00000261824 E041 1.8100996 0.0080019756 4.038386e-01 5.476176e-01 19 27727817 27727817 1 - 0.377 0.519 0.737
ENSG00000261824 E042 4.9058253 0.0033343632 7.164005e-01 8.120718e-01 19 27727818 27727881 64 - 0.755 0.804 0.193
ENSG00000261824 E043 5.7990127 0.0028554647 1.948155e-01 3.197727e-01 19 27727882 27727979 98 - 0.913 0.748 -0.642
ENSG00000261824 E044 3.2548315 0.0051102856 8.750830e-02 1.713507e-01 19 27727980 27728207 228 - 0.734 0.465 -1.204
ENSG00000261824 E045 1.8864884 0.0287222858 5.712985e-01 6.976150e-01 19 27728208 27728220 13 - 0.506 0.404 -0.527
ENSG00000261824 E046 2.1831765 0.0737384952 3.958667e-01 5.396504e-01 19 27728221 27728229 9 - 0.575 0.403 -0.851
ENSG00000261824 E047 2.1789101 0.0076958929 3.113328e-01 4.537808e-01 19 27728230 27728261 32 - 0.575 0.404 -0.848
ENSG00000261824 E048 4.1656085 0.0329937563 2.416278e-02 6.014330e-02 19 27728262 27728494 233 - 0.849 0.465 -1.660
ENSG00000261824 E049 11.7202564 0.0017701949 2.095798e-04 1.004840e-03 19 27728495 27729586 1092 - 1.238 0.854 -1.407
ENSG00000261824 E050 5.0941802 0.0036075333 4.242522e-03 1.382077e-02 19 27729587 27729903 317 - 0.927 0.519 -1.695
ENSG00000261824 E051 2.9433696 0.0052932970 1.583974e-02 4.237866e-02 19 27729904 27730052 149 - 0.734 0.333 -1.940
ENSG00000261824 E052 0.6674587 0.0193915226 4.935859e-01 6.305820e-01 19 27730053 27730160 108 - 0.262 0.141 -1.109
ENSG00000261824 E053 0.6717251 0.0193491082 4.934951e-01 6.305168e-01 19 27730161 27730261 101 - 0.262 0.141 -1.109
ENSG00000261824 E054 0.8210624 0.0598339171 4.450883e-01 5.866437e-01 19 27730262 27730271 10 - 0.191 0.332 1.054
ENSG00000261824 E055 0.8210624 0.0598339171 4.450883e-01 5.866437e-01 19 27730272 27730272 1 - 0.191 0.332 1.054
ENSG00000261824 E056 6.0414570 0.0968286532 4.951222e-01 6.319768e-01 19 27730273 27730333 61 - 0.777 0.928 0.587
ENSG00000261824 E057 30.7089835 0.0007586497 8.914098e-02 1.738201e-01 19 27730334 27730537 204 - 1.456 1.559 0.353
ENSG00000261824 E058 34.6146577 0.0140791892 3.161475e-01 4.589060e-01 19 27730538 27730707 170 - 1.519 1.592 0.252
ENSG00000261824 E059 1.7274724 0.0085965715 3.228514e-01 4.661938e-01 19 27730708 27731331 624 - 0.506 0.333 -0.940
ENSG00000261824 E060 0.2998086 0.0282474733 8.139297e-01   19 27731332 27731367 36 - 0.106 0.141 0.472
ENSG00000261824 E061 3.5493255 0.0914195588 8.709326e-01 9.210220e-01 19 27731368 27732447 1080 - 0.635 0.656 0.086
ENSG00000261824 E062 1.4746923 0.0881259183 1.833178e-01 3.053743e-01 19 27732448 27732795 348 - 0.506 0.245 -1.539
ENSG00000261824 E063 53.7413744 0.0013228042 4.027967e-02 9.155203e-02 19 27732796 27732967 172 - 1.690 1.787 0.326
ENSG00000261824 E064 2.1556141 0.2700345389 9.994190e-01 1.000000e+00 19 27739569 27739716 148 - 0.505 0.475 -0.146
ENSG00000261824 E065 0.0000000       19 27746021 27746080 60 -      
ENSG00000261824 E066 4.7468463 0.0042157819 1.105594e-01 2.063479e-01 19 27746081 27746097 17 - 0.662 0.876 0.859
ENSG00000261824 E067 59.2272979 0.0005047382 6.169255e-03 1.905793e-02 19 27746098 27746340 243 - 1.723 1.843 0.403
ENSG00000261824 E068 1.1759384 0.0125851522 1.183614e-01 2.175876e-01 19 27771544 27771663 120 - 0.191 0.465 1.796
ENSG00000261824 E069 3.8301074 0.0045439587 6.718513e-01 7.779917e-01 19 27771664 27771989 326 - 0.711 0.649 -0.262
ENSG00000261824 E070 6.7913647 0.0242299890 1.251847e-01 2.274052e-01 19 27772057 27773765 1709 - 0.776 0.978 0.773
ENSG00000261824 E071 1.1342099 0.0128427773 9.526905e-01 9.743692e-01 19 27773766 27773962 197 - 0.323 0.333 0.060
ENSG00000261824 E072 1.6941880 0.0099539714 3.242825e-01 4.676401e-01 19 27773963 27774160 198 - 0.506 0.333 -0.941
ENSG00000261824 E073 0.7500885 0.1321206800 3.447269e-01 4.888270e-01 19 27774161 27774166 6 - 0.324 0.140 -1.540
ENSG00000261824 E074 1.2284810 0.0463914574 3.445454e-01 4.886382e-01 19 27774167 27774252 86 - 0.425 0.247 -1.115
ENSG00000261824 E075 0.3030308 0.3920435001 4.197282e-01   19 27774253 27774402 150 - 0.192 0.000 -12.910
ENSG00000261824 E076 2.1233634 0.1533729488 2.711390e-01 4.098334e-01 19 27774403 27774743 341 - 0.605 0.332 -1.401
ENSG00000261824 E077 1.2073765 0.0171246322 3.328943e-01 4.765656e-01 19 27774744 27774792 49 - 0.424 0.247 -1.111
ENSG00000261824 E078 0.5827671 0.0927632169 9.509917e-02 1.830213e-01 19 27775422 27775756 335 - 0.323 0.000 -14.065
ENSG00000261824 E079 0.1451727 0.0427813551 6.730923e-01   19 27775757 27775783 27 - 0.106 0.000 -12.447
ENSG00000261824 E080 0.1451727 0.0427813551 6.730923e-01   19 27775784 27775792 9 - 0.106 0.000 -12.447
ENSG00000261824 E081 0.1451727 0.0427813551 6.730923e-01   19 27775793 27775906 114 - 0.106 0.000 -12.447
ENSG00000261824 E082 0.5848434 0.0216006572 7.822689e-02 1.566183e-01 19 27775907 27776325 419 - 0.323 0.000 -14.185
ENSG00000261824 E083 1.9177095 0.0076977413 5.530646e-01 6.822759e-01 19 27776326 27777176 851 - 0.506 0.404 -0.525
ENSG00000261824 E084 2.2425234 0.4645417462 5.922969e-01 7.148530e-01 19 27777177 27777633 457 - 0.543 0.469 -0.356
ENSG00000261824 E085 0.2987644 0.0296016976 3.126076e-01   19 27777634 27777638 5 - 0.191 0.000 -13.356
ENSG00000261824 E086 0.8847512 0.2368753137 9.813075e-01 9.923442e-01 19 27778023 27778468 446 - 0.262 0.253 -0.065
ENSG00000261824 E087 0.0000000       19 27778469 27778710 242 -      
ENSG00000261824 E088 0.9148410 0.0137494705 6.727112e-01 7.785734e-01 19 27778711 27779043 333 - 0.323 0.247 -0.526
ENSG00000261824 E089 0.6695470 0.0182132641 1.855282e-01 3.081624e-01 19 27790315 27790492 178 - 0.106 0.332 2.058
ENSG00000261824 E090 36.6758335 0.0308119385 2.538473e-02 6.267021e-02 19 27790493 27791702 1210 - 1.453 1.696 0.831
ENSG00000261824 E091 7.9817822 0.0502408888 8.602512e-01 9.138581e-01 19 27791703 27791901 199 - 0.941 0.997 0.207
ENSG00000261824 E092 1.5081140 0.1192472875 4.517502e-01 5.926813e-01 19 27792056 27792923 868 - 0.323 0.467 0.803
ENSG00000261824 E093 0.1472490 0.0435045311 6.721116e-01   19 27792924 27792999 76 - 0.106 0.000 -12.446
ENSG00000261824 E094 63.5749141 0.0004337146 1.079015e-01 2.024243e-01 19 27793000 27793229 230 - 1.781 1.848 0.226
ENSG00000261824 E095 25.8763200 0.0008336866 1.979402e-01 3.236538e-01 19 27793230 27793232 3 - 1.389 1.474 0.294
ENSG00000261824 E096 9.9620822 0.0030597879 9.910882e-01 9.985411e-01 19 27793233 27793531 299 - 1.039 1.040 0.005
ENSG00000261824 E097 54.9805355 0.0005683995 2.679742e-01 4.063629e-01 19 27793532 27794005 474 - 1.728 1.778 0.170