ENSG00000255717

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000668048 ENSG00000255717 HEK293_OSMI2_2hA HEK293_TMG_2hB SNHG1 lncRNA lncRNA 150.3491 131.6451 168.7059 12.35867 1.958408 0.3578318 10.29899 5.872333 12.29053 0.7066741 0.8083183 1.0642603 0.06621667 0.0444000 0.07283333 0.028433333 0.0003860334 4.991794e-13    
ENST00000686081 ENSG00000255717 HEK293_OSMI2_2hA HEK293_TMG_2hB SNHG1 lncRNA lncRNA 150.3491 131.6451 168.7059 12.35867 1.958408 0.3578318 20.92499 21.776682 19.26104 3.4552897 1.3721865 -0.1770121 0.13860000 0.1641333 0.11406667 -0.050066667 0.0936144458 4.991794e-13    
ENST00000686500 ENSG00000255717 HEK293_OSMI2_2hA HEK293_TMG_2hB SNHG1 lncRNA lncRNA 150.3491 131.6451 168.7059 12.35867 1.958408 0.3578318 29.25203 33.561531 29.67554 1.6873279 1.8373986 -0.1774778 0.20119167 0.2569333 0.17610000 -0.080833333 0.0061933171 4.991794e-13    
ENST00000688102 ENSG00000255717 HEK293_OSMI2_2hA HEK293_TMG_2hB SNHG1 lncRNA lncRNA 150.3491 131.6451 168.7059 12.35867 1.958408 0.3578318 10.16946 6.273148 9.21951 1.8510355 0.7896549 0.5547666 0.06665417 0.0464000 0.05453333 0.008133333 0.7869825879 4.991794e-13    
ENST00000689147 ENSG00000255717 HEK293_OSMI2_2hA HEK293_TMG_2hB SNHG1 lncRNA lncRNA 150.3491 131.6451 168.7059 12.35867 1.958408 0.3578318 19.84947 21.059900 22.62943 1.2467966 3.6118381 0.1036543 0.13896667 0.1614667 0.13373333 -0.027733333 0.6496303394 4.991794e-13    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000255717 E001 0.2998086 0.0283992433 8.698575e-01   11 62851978 62851979 2 - 0.109 0.137 0.376
ENSG00000255717 E002 0.4470576 0.0212277668 7.152349e-01 8.112017e-01 11 62851980 62851983 4 - 0.196 0.137 -0.623
ENSG00000255717 E003 0.7500885 0.0983175268 2.920141e-01 4.329422e-01 11 62851984 62851986 3 - 0.331 0.136 -1.633
ENSG00000255717 E004 0.7500885 0.0983175268 2.920141e-01 4.329422e-01 11 62851987 62851987 1 - 0.331 0.136 -1.633
ENSG00000255717 E005 3.9615474 0.0570776903 3.332917e-02 7.844397e-02 11 62851988 62851989 2 - 0.477 0.876 1.704
ENSG00000255717 E006 5.1041737 0.0092297405 3.573865e-04 1.608749e-03 11 62851990 62851990 1 - 0.477 0.994 2.150
ENSG00000255717 E007 9.1109640 0.0490791323 2.495313e-02 6.177453e-02 11 62851991 62851993 3 - 0.809 1.160 1.306
ENSG00000255717 E008 12.8217326 0.0017152180 1.981033e-03 7.168248e-03 11 62851994 62851998 5 - 0.981 1.282 1.084
ENSG00000255717 E009 14.4137110 0.0016128238 1.609867e-02 4.295556e-02 11 62851999 62852000 2 - 1.074 1.299 0.801
ENSG00000255717 E010 20.9081998 0.0010691806 2.588833e-03 9.031834e-03 11 62852001 62852004 4 - 1.215 1.454 0.832
ENSG00000255717 E011 21.0597152 0.0015402795 3.804048e-03 1.259297e-02 11 62852005 62852005 1 - 1.223 1.454 0.805
ENSG00000255717 E012 79.1953733 0.0004085476 1.325251e-08 1.596800e-07 11 62852006 62852019 14 - 1.779 2.020 0.813
ENSG00000255717 E013 115.8531054 0.0043816705 2.486085e-04 1.169297e-03 11 62852020 62852025 6 - 1.977 2.156 0.598
ENSG00000255717 E014 195.5927259 0.0021382015 3.005556e-02 7.206692e-02 11 62852026 62852029 4 - 2.255 2.342 0.291
ENSG00000255717 E015 251.1118600 0.0012700067 3.978717e-04 1.766105e-03 11 62852030 62852035 6 - 2.350 2.463 0.378
ENSG00000255717 E016 253.2615936 0.0005874223 2.083006e-05 1.286830e-04 11 62852036 62852038 3 - 2.351 2.470 0.397
ENSG00000255717 E017 350.1629474 0.0006521684 1.333609e-09 1.931414e-08 11 62852039 62852060 22 - 2.474 2.622 0.495
ENSG00000255717 E018 618.8705424 0.0006326420 5.891774e-18 2.968561e-16 11 62852061 62852137 77 - 2.706 2.878 0.571
ENSG00000255717 E019 1272.9695452 0.0006701471 1.579767e-14 5.063995e-13 11 62852138 62852251 114 - 3.041 3.170 0.429
ENSG00000255717 E020 730.9894022 0.0003109088 1.794714e-14 5.698060e-13 11 62852252 62852257 6 - 2.802 2.931 0.429
ENSG00000255717 E021 859.1216512 0.0005745199 1.561389e-08 1.856294e-07 11 62852258 62852275 18 - 2.885 2.989 0.345
ENSG00000255717 E022 838.2604964 0.0009210063 1.064537e-08 1.305751e-07 11 62852276 62852289 14 - 2.866 2.984 0.394
ENSG00000255717 E023 1373.5675588 0.0009073260 4.706191e-17 2.104754e-15 11 62852290 62852436 147 - 3.062 3.211 0.496
ENSG00000255717 E024 1305.0129956 0.0002590027 1.247061e-24 1.314702e-22 11 62852437 62852608 172 - 3.049 3.184 0.447
ENSG00000255717 E025 710.5560276 0.0004840589 1.148079e-05 7.525175e-05 11 62852609 62852655 47 - 2.813 2.898 0.281
ENSG00000255717 E026 525.9355263 0.0007846293 1.566937e-02 4.199996e-02 11 62852656 62852658 3 - 2.695 2.754 0.196
ENSG00000255717 E027 547.0156548 0.0010644969 4.537133e-03 1.464578e-02 11 62852659 62852666 8 - 2.706 2.776 0.234
ENSG00000255717 E028 563.6108897 0.0002670231 3.889568e-05 2.248534e-04 11 62852667 62852681 15 - 2.716 2.796 0.266
ENSG00000255717 E029 59.9726991 0.0004003706 2.411079e-04 1.138003e-03 11 62852682 62852748 67 - 1.856 1.699 -0.532
ENSG00000255717 E030 51.4215183 0.0004227119 1.369762e-04 6.901705e-04 11 62852749 62852810 62 - 1.799 1.621 -0.602
ENSG00000255717 E031 658.8580845 0.0001607553 9.994364e-03 2.874802e-02 11 62852811 62852839 29 - 2.798 2.847 0.164
ENSG00000255717 E032 211.1245922 0.0002192071 2.788561e-17 1.284798e-15 11 62852840 62852909 70 - 2.415 2.211 -0.681
ENSG00000255717 E033 195.1032937 0.0021197612 2.805288e-12 6.399969e-11 11 62852910 62852993 84 - 2.391 2.159 -0.774
ENSG00000255717 E034 179.5190545 0.0002009988 1.506613e-29 2.427069e-27 11 62852994 62853070 77 - 2.380 2.077 -1.014
ENSG00000255717 E035 98.6833949 0.0002892285 2.178525e-24 2.243016e-22 11 62853071 62853072 2 - 2.144 1.770 -1.259
ENSG00000255717 E036 99.8976015 0.0002854697 3.204018e-22 2.612964e-20 11 62853073 62853074 2 - 2.143 1.791 -1.181
ENSG00000255717 E037 726.2631394 0.0001293814 3.546768e-01 4.990095e-01 11 62853075 62853115 41 - 2.853 2.877 0.082
ENSG00000255717 E038 216.8898987 0.0005415386 1.962269e-36 5.295527e-34 11 62853116 62853551 436 - 2.471 2.136 -1.117
ENSG00000255717 E039 737.1939574 0.0001134179 9.602367e-01 9.789795e-01 11 62853552 62853590 39 - 2.865 2.878 0.042
ENSG00000255717 E040 114.5224186 0.0065988097 7.865047e-19 4.400501e-17 11 62853591 62853662 72 - 2.231 1.748 -1.624
ENSG00000255717 E041 134.4888976 0.0088585569 1.074995e-15 4.041568e-14 11 62853663 62853800 138 - 2.296 1.835 -1.544
ENSG00000255717 E042 651.4347942 0.0001194384 7.571356e-01 8.420573e-01 11 62853801 62853833 33 - 2.810 2.827 0.055
ENSG00000255717 E043 130.3636697 0.0065002687 1.514598e-05 9.657571e-05 11 62853834 62853849 16 - 2.207 2.001 -0.690
ENSG00000255717 E044 253.1199788 0.0043588920 7.949571e-13 1.984742e-11 11 62853850 62854017 168 - 2.518 2.245 -0.911
ENSG00000255717 E045 501.7172264 0.0001748276 1.974478e-01 3.230354e-01 11 62854018 62854064 47 - 2.687 2.721 0.110
ENSG00000255717 E046 105.8836886 0.0004202582 2.604701e-24 2.663237e-22 11 62854065 62854160 96 - 2.172 1.806 -1.228
ENSG00000255717 E047 225.8624441 0.0008357737 1.132518e-55 9.752372e-53 11 62854161 62854441 281 - 2.521 2.072 -1.499
ENSG00000255717 E048 107.1570395 0.0008473020 4.299580e-32 8.354283e-30 11 62854442 62854518 77 - 2.200 1.747 -1.523
ENSG00000255717 E049 510.0376533 0.0001222135 8.870765e-02 1.731462e-01 11 62854519 62854551 33 - 2.692 2.732 0.132
ENSG00000255717 E050 95.1667927 0.0003106675 1.210030e-27 1.661135e-25 11 62854552 62854620 69 - 2.140 1.727 -1.390
ENSG00000255717 E051 101.3976140 0.0003184245 7.763298e-27 9.864074e-25 11 62854621 62854679 59 - 2.159 1.764 -1.327
ENSG00000255717 E052 145.7505206 0.0009230636 1.326494e-34 3.161011e-32 11 62854680 62854887 208 - 2.320 1.903 -1.397
ENSG00000255717 E053 318.0777474 0.0004480559 2.297572e-02 5.769880e-02 11 62854888 62854938 51 - 2.524 2.485 -0.132
ENSG00000255717 E054 74.0856792 0.0003236990 4.909368e-21 3.553936e-19 11 62854939 62854970 32 - 2.027 1.625 -1.355
ENSG00000255717 E055 103.5924850 0.0003354820 2.406338e-32 4.780545e-30 11 62854971 62855011 41 - 2.180 1.742 -1.474
ENSG00000255717 E056 137.5789133 0.0007607678 8.696170e-50 5.180702e-47 11 62855012 62855132 121 - 2.322 1.799 -1.755
ENSG00000255717 E057 674.3141355 0.0013681231 4.374340e-01 5.793969e-01 11 62855133 62855208 76 - 2.837 2.824 -0.042
ENSG00000255717 E058 463.7812727 0.0027473642 4.744107e-01 6.132423e-01 11 62855209 62855216 8 - 2.677 2.658 -0.064
ENSG00000255717 E059 108.3012632 0.0002864596 9.018838e-38 2.720688e-35 11 62855217 62855291 75 - 2.207 1.739 -1.574
ENSG00000255717 E060 121.4274194 0.0002615086 3.109452e-42 1.240161e-39 11 62855292 62855423 132 - 2.255 1.783 -1.583
ENSG00000255717 E061 433.4440736 0.0041491219 2.911157e-01 4.319437e-01 11 62855424 62855440 17 - 2.656 2.618 -0.124
ENSG00000255717 E062 396.4944859 0.0051411338 7.311841e-02 1.485094e-01 11 62855441 62855466 26 - 2.632 2.561 -0.237
ENSG00000255717 E063 110.8975566 0.0004099178 8.984323e-14 2.570301e-12 11 62855467 62855563 97 - 2.153 1.899 -0.852
ENSG00000255717 E064 148.9807477 0.0023999855 1.111157e-13 3.136200e-12 11 62855564 62855745 182 - 2.290 2.009 -0.938
ENSG00000255717 E065 89.0180954 0.0019164163 1.303637e-13 3.647470e-12 11 62855746 62855864 119 - 2.081 1.761 -1.077
ENSG00000255717 E066 149.4675499 0.0002216481 1.271334e-03 4.881663e-03 11 62855865 62855953 89 - 2.219 2.136 -0.277