ENSG00000253729

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000314191 ENSG00000253729 HEK293_OSMI2_2hA HEK293_TMG_2hB PRKDC protein_coding protein_coding 101.9213 102.869 91.56336 9.069648 1.953086 -0.1679481 45.142408 30.36410650 55.2489973 4.37835446 1.5483676 0.8633674 0.45237917 0.2927333 0.603333333 0.31060000 2.105985e-18 1.373764e-45 FALSE TRUE
ENST00000521331 ENSG00000253729 HEK293_OSMI2_2hA HEK293_TMG_2hB PRKDC protein_coding retained_intron 101.9213 102.869 91.56336 9.069648 1.953086 -0.1679481 4.200513 9.13247593 0.3121039 1.30171079 0.1487466 -4.8269871 0.03750833 0.0904000 0.003333333 -0.08706667 3.618231e-10 1.373764e-45 FALSE FALSE
ENST00000536429 ENSG00000253729 HEK293_OSMI2_2hA HEK293_TMG_2hB PRKDC protein_coding protein_coding 101.9213 102.869 91.56336 9.069648 1.953086 -0.1679481 11.539305 19.18756455 2.6760483 1.17248788 1.0249856 -2.8373661 0.10740833 0.1876667 0.029466667 -0.15820000 2.016301e-04 1.373764e-45 FALSE TRUE
ENST00000536483 ENSG00000253729 HEK293_OSMI2_2hA HEK293_TMG_2hB PRKDC protein_coding retained_intron 101.9213 102.869 91.56336 9.069648 1.953086 -0.1679481 33.509981 43.50530090 20.0110184 3.92683540 1.6600661 -1.1200074 0.32369167 0.4228333 0.218033333 -0.20480000 6.238167e-13 1.373764e-45 FALSE TRUE
MSTRG.31494.2 ENSG00000253729 HEK293_OSMI2_2hA HEK293_TMG_2hB PRKDC protein_coding   101.9213 102.869 91.56336 9.069648 1.953086 -0.1679481 2.410698 0.04312796 5.7472547 0.04312796 0.1887233 6.7597658 0.02525000 0.0005000 0.062833333 0.06233333 1.395734e-40 1.373764e-45 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000253729 E001 2077.6488496 0.0179443157 1.095855e-20 7.626984e-19 8 47773111 47773734 624 - 2.974 3.559 1.946
ENSG00000253729 E002 1656.4380886 0.0119721167 7.157298e-20 4.470585e-18 8 47773735 47773986 252 - 2.957 3.427 1.561
ENSG00000253729 E003 1040.1037704 0.0067467975 2.428085e-24 2.489142e-22 8 47773987 47774133 147 - 2.796 3.202 1.350
ENSG00000253729 E004 1231.5449252 0.0022395230 5.668898e-47 2.942344e-44 8 47774134 47774377 244 - 2.908 3.252 1.141
ENSG00000253729 E005 787.7139708 0.0018609101 3.645271e-42 1.444740e-39 8 47776844 47776983 140 - 2.730 3.047 1.054
ENSG00000253729 E006 927.3650678 0.0014452957 1.898230e-38 5.953872e-36 8 47777686 47777874 189 - 2.830 3.096 0.882
ENSG00000253729 E007 698.6905667 0.0023471387 4.293741e-22 3.454082e-20 8 47778459 47778536 78 - 2.719 2.964 0.816
ENSG00000253729 E008 783.3593961 0.0029156059 4.106014e-20 2.645042e-18 8 47778537 47778660 124 - 2.765 3.016 0.836
ENSG00000253729 E009 12.7406144 0.0019716727 3.829297e-01 5.270855e-01 8 47778661 47778719 59 - 1.172 1.068 -0.371
ENSG00000253729 E010 649.4116788 0.0024733363 2.945240e-16 1.196327e-14 8 47778728 47778799 72 - 2.706 2.917 0.703
ENSG00000253729 E011 601.0710752 0.0018190910 8.133106e-16 3.107690e-14 8 47779004 47779093 90 - 2.684 2.871 0.622
ENSG00000253729 E012 7.2699673 0.0189814031 2.230608e-01 3.540369e-01 8 47779094 47779361 268 - 0.973 0.789 -0.705
ENSG00000253729 E013 609.4548328 0.0025027069 5.754212e-12 1.245138e-10 8 47782162 47782254 93 - 2.695 2.873 0.591
ENSG00000253729 E014 429.6268527 0.0006218015 4.945848e-29 7.667562e-27 8 47782378 47782413 36 - 2.522 2.738 0.718
ENSG00000253729 E015 849.0396388 0.0018413944 1.349000e-19 8.222779e-18 8 47782414 47782598 185 - 2.827 3.028 0.668
ENSG00000253729 E016 2.1390410 0.0126359976 8.300975e-01 8.933573e-01 8 47782599 47783007 409 - 0.474 0.498 0.117
ENSG00000253729 E017 521.3129223 0.0020691448 2.106334e-18 1.114633e-16 8 47783742 47783809 68 - 2.606 2.825 0.730
ENSG00000253729 E018 2.4369611 0.3764846160 7.617256e-01 8.455301e-01 8 47783810 47784139 330 - 0.508 0.523 0.072
ENSG00000253729 E019 755.5657842 0.0003359695 7.389329e-44 3.196087e-41 8 47785113 47785317 205 - 2.776 2.974 0.660
ENSG00000253729 E020 489.4396759 0.0001458893 1.636805e-34 3.871258e-32 8 47788906 47789049 144 - 2.593 2.782 0.630
ENSG00000253729 E021 415.1138532 0.0001221121 2.137678e-17 9.994490e-16 8 47789151 47789238 88 - 2.548 2.683 0.451
ENSG00000253729 E022 737.6130326 0.0008339151 2.278973e-12 5.274182e-11 8 47794290 47794501 212 - 2.807 2.924 0.388
ENSG00000253729 E023 543.2851014 0.0001077408 3.388305e-14 1.031171e-12 8 47798237 47798382 146 - 2.680 2.782 0.342
ENSG00000253729 E024 212.4279713 0.0011468371 8.735614e-05 4.626344e-04 8 47798383 47798397 15 - 2.273 2.373 0.331
ENSG00000253729 E025 587.1217653 0.0008533354 4.627973e-05 2.629426e-04 8 47799210 47799390 181 - 2.730 2.797 0.223
ENSG00000253729 E026 592.9920817 0.0008698196 2.110056e-04 1.010909e-03 8 47800793 47800986 194 - 2.739 2.798 0.197
ENSG00000253729 E027 587.7296231 0.0015407889 6.000170e-05 3.314615e-04 8 47803306 47803480 175 - 2.724 2.807 0.278
ENSG00000253729 E028 681.9801862 0.0019586648 1.332883e-03 5.085816e-03 8 47807137 47807326 190 - 2.794 2.866 0.237
ENSG00000253729 E029 595.2861839 0.0017884205 9.181453e-01 9.522655e-01 8 47817450 47817561 112 - 2.773 2.758 -0.047
ENSG00000253729 E030 482.6948852 0.0030480239 4.060927e-01 5.497455e-01 8 47819402 47819499 98 - 2.691 2.655 -0.117
ENSG00000253729 E031 236.8062808 0.0044137555 4.263249e-01 5.691756e-01 8 47819500 47819510 11 - 2.384 2.343 -0.135
ENSG00000253729 E032 574.7386798 0.0003413745 6.674797e-01 7.747052e-01 8 47820719 47820943 225 - 2.760 2.735 -0.083
ENSG00000253729 E033 490.3145866 0.0003016824 3.034915e-03 1.036890e-02 8 47821604 47821792 189 - 2.710 2.637 -0.242
ENSG00000253729 E034 387.2112562 0.0027994346 5.153505e-03 1.634744e-02 8 47823858 47823996 139 - 2.620 2.517 -0.341
ENSG00000253729 E035 389.6440655 0.0091388691 4.673848e-02 1.033591e-01 8 47826656 47826861 206 - 2.622 2.523 -0.332
ENSG00000253729 E036 365.3451920 0.0053047838 1.111522e-02 3.144075e-02 8 47828168 47828347 180 - 2.597 2.488 -0.363
ENSG00000253729 E037 364.6941439 0.0056328836 2.990317e-04 1.375717e-03 8 47830605 47830736 132 - 2.613 2.454 -0.531
ENSG00000253729 E038 373.0738419 0.0106739723 2.723310e-03 9.442392e-03 8 47831814 47831926 113 - 2.625 2.461 -0.545
ENSG00000253729 E039 455.2673976 0.0060784995 4.019254e-05 2.315590e-04 8 47834196 47834396 201 - 2.716 2.536 -0.599
ENSG00000253729 E040 439.0241532 0.0069429191 4.143665e-05 2.379524e-04 8 47836338 47836527 190 - 2.703 2.515 -0.627
ENSG00000253729 E041 455.0229108 0.0064711857 3.954169e-04 1.756773e-03 8 47837212 47837419 208 - 2.709 2.551 -0.526
ENSG00000253729 E042 322.1945073 0.0046758720 1.253593e-04 6.383267e-04 8 47839148 47839246 99 - 2.560 2.399 -0.539
ENSG00000253729 E043 46.8213925 0.0115957193 6.134234e-02 1.288930e-01 8 47839247 47839249 3 - 1.725 1.573 -0.519
ENSG00000253729 E044 451.1260008 0.0044866708 1.196436e-07 1.197934e-06 8 47840016 47840189 174 - 2.721 2.513 -0.691
ENSG00000253729 E045 420.6809613 0.0054050137 2.735121e-09 3.743663e-08 8 47849154 47849303 150 - 2.703 2.452 -0.838
ENSG00000253729 E046 324.7978055 0.0074548137 5.067111e-07 4.478418e-06 8 47849379 47849503 125 - 2.589 2.345 -0.816
ENSG00000253729 E047 265.0784625 0.0105878421 2.068235e-05 1.278622e-04 8 47852673 47852784 112 - 2.500 2.260 -0.800
ENSG00000253729 E048 302.2467944 0.0128770373 4.002373e-06 2.911595e-05 8 47854083 47854214 132 - 2.568 2.290 -0.926
ENSG00000253729 E049 285.9967611 0.0179454142 2.483143e-06 1.893283e-05 8 47855222 47855373 152 - 2.556 2.232 -1.080
ENSG00000253729 E050 252.9498463 0.0129922791 3.304683e-06 2.451877e-05 8 47857156 47857299 144 - 2.492 2.206 -0.955
ENSG00000253729 E051 251.4333047 0.0106329534 4.721823e-08 5.119821e-07 8 47858516 47858635 120 - 2.497 2.184 -1.045
ENSG00000253729 E052 293.3438425 0.0217394072 4.435572e-07 3.964268e-06 8 47858849 47858980 132 - 2.580 2.202 -1.259
ENSG00000253729 E053 132.0865714 0.0046615872 7.054300e-15 2.378388e-13 8 47858981 47858986 6 - 2.239 1.837 -1.347
ENSG00000253729 E054 287.6659390 0.0154646575 6.147153e-09 7.891574e-08 8 47859611 47859759 149 - 2.573 2.189 -1.279
ENSG00000253729 E055 200.7331900 0.0188747516 4.897772e-06 3.493875e-05 8 47860899 47860971 73 - 2.405 2.073 -1.110
ENSG00000253729 E056 199.7238944 0.0143785270 3.085247e-06 2.301688e-05 8 47862062 47862127 66 - 2.397 2.089 -1.026
ENSG00000253729 E057 0.0000000       8 47862369 47862372 4 -      
ENSG00000253729 E058 320.7791001 0.0212908217 1.079379e-05 7.116485e-05 8 47862373 47862541 169 - 2.605 2.284 -1.069
ENSG00000253729 E059 391.5055313 0.0206337590 3.936473e-08 4.336278e-07 8 47863399 47863577 179 - 2.709 2.312 -1.324
ENSG00000253729 E060 368.9308704 0.0142108097 1.989349e-10 3.334303e-09 8 47864556 47864763 208 - 2.683 2.286 -1.324
ENSG00000253729 E061 0.4720498 0.1999439606 1.000000e+00 1.000000e+00 8 47864764 47864792 29 - 0.174 0.155 -0.200
ENSG00000253729 E062 287.0240432 0.0149794422 2.953935e-10 4.813886e-09 8 47877724 47877851 128 - 2.578 2.166 -1.373
ENSG00000253729 E063 320.9355974 0.0209606822 2.537681e-08 2.898740e-07 8 47879491 47879658 168 - 2.626 2.216 -1.367
ENSG00000253729 E064 224.8081542 0.0185231352 8.938244e-08 9.156069e-07 8 47881416 47881520 105 - 2.467 2.082 -1.285
ENSG00000253729 E065 328.9253525 0.0149406772 1.015565e-10 1.789727e-09 8 47881912 47882097 186 - 2.639 2.220 -1.396
ENSG00000253729 E066 329.6286832 0.0155299205 5.631621e-14 1.658728e-12 8 47885944 47886147 204 - 2.655 2.156 -1.664
ENSG00000253729 E067 256.5273170 0.0071904503 2.598551e-22 2.145044e-20 8 47887547 47887705 159 - 2.546 2.045 -1.673
ENSG00000253729 E068 224.3189304 0.0094337464 2.835218e-19 1.666533e-17 8 47888518 47888650 133 - 2.492 1.971 -1.743
ENSG00000253729 E069 281.0394096 0.0099713903 6.619184e-20 4.150892e-18 8 47889014 47889222 209 - 2.590 2.067 -1.744
ENSG00000253729 E070 299.9888626 0.0126237123 3.264037e-19 1.905584e-17 8 47890257 47890480 224 - 2.624 2.065 -1.867
ENSG00000253729 E071 291.5804833 0.0222678133 1.489666e-11 3.016061e-10 8 47893139 47893387 249 - 2.606 2.084 -1.745
ENSG00000253729 E072 205.3228773 0.0319177919 1.975571e-07 1.894346e-06 8 47897161 47897294 134 - 2.445 1.975 -1.571
ENSG00000253729 E073 171.3879241 0.0621715824 3.587867e-05 2.091610e-04 8 47898470 47898569 100 - 2.369 1.888 -1.609
ENSG00000253729 E074 169.0753945 0.0418667831 1.311492e-06 1.061878e-05 8 47900373 47900467 95 - 2.365 1.873 -1.648
ENSG00000253729 E075 296.5583551 0.0318157109 9.565920e-08 9.748439e-07 8 47902569 47902795 227 - 2.604 2.134 -1.569
ENSG00000253729 E076 210.0470561 0.0281616258 3.016574e-09 4.090420e-08 8 47904869 47904976 108 - 2.463 1.948 -1.722
ENSG00000253729 E077 261.3632519 0.0316566526 7.237821e-10 1.102681e-08 8 47912410 47912562 153 - 2.564 2.009 -1.857
ENSG00000253729 E078 256.3896652 0.0355128035 6.288006e-09 8.056021e-08 8 47913901 47914064 164 - 2.555 2.006 -1.834
ENSG00000253729 E079 198.5817409 0.0393003702 1.881727e-08 2.205305e-07 8 47915328 47915418 91 - 2.447 1.885 -1.878
ENSG00000253729 E080 209.4170353 0.0652012551 3.674636e-06 2.697728e-05 8 47918277 47918383 107 - 2.470 1.908 -1.878
ENSG00000253729 E081 0.3666179 0.0309910369 6.629123e-01 7.711140e-01 8 47926833 47927193 361 - 0.096 0.155 0.796
ENSG00000253729 E082 265.4219430 0.0444494678 1.901982e-09 2.674223e-08 8 47927194 47927353 160 - 2.582 1.952 -2.105
ENSG00000253729 E083 240.9204761 0.0463163572 9.428878e-09 1.168633e-07 8 47927771 47927890 120 - 2.538 1.922 -2.060
ENSG00000253729 E084 171.2206960 0.0279205071 9.298904e-12 1.948081e-10 8 47929092 47929178 87 - 2.390 1.775 -2.061
ENSG00000253729 E085 194.9799200 0.0205609673 1.577081e-13 4.359744e-12 8 47929853 47930012 160 - 2.441 1.861 -1.941
ENSG00000253729 E086 190.5416327 0.0213069181 5.052706e-12 1.104824e-10 8 47930672 47930787 116 - 2.426 1.877 -1.839
ENSG00000253729 E087 191.5654441 0.0223285871 5.151804e-15 1.768105e-13 8 47933020 47933172 153 - 2.443 1.798 -2.158
ENSG00000253729 E088 186.6969308 0.0079354696 7.424985e-32 1.409460e-29 8 47933965 47934090 126 - 2.437 1.749 -2.307
ENSG00000253729 E089 150.8006336 0.0004241895 9.051855e-65 1.071779e-61 8 47935009 47935058 50 - 2.342 1.675 -2.239
ENSG00000253729 E090 228.3417989 0.0298575862 1.503909e-13 4.167803e-12 8 47935732 47935900 169 - 2.523 1.849 -2.256
ENSG00000253729 E091 194.2688651 0.0245804315 9.035974e-16 3.436736e-14 8 47936353 47936453 101 - 2.455 1.764 -2.315
ENSG00000253729 E092 139.0404696 0.0240153439 3.480147e-14 1.056915e-12 8 47936454 47936517 64 - 2.308 1.643 -2.235
ENSG00000253729 E093 183.3722783 0.0107350393 1.497430e-25 1.736129e-23 8 47939551 47939697 147 - 2.428 1.756 -2.254
ENSG00000253729 E094 0.2924217 0.0271517457 4.170748e-01   8 47939698 47939950 253 - 0.174 0.000 -10.402
ENSG00000253729 E095 192.4458899 0.0178402933 1.360977e-17 6.568996e-16 8 47943209 47943366 158 - 2.446 1.797 -2.175
ENSG00000253729 E096 101.1635254 0.0105690377 1.144789e-20 7.932582e-19 8 47943853 47943883 31 - 2.171 1.504 -2.252
ENSG00000253729 E097 122.8133455 0.0283473824 1.181653e-14 3.845080e-13 8 47943974 47944029 56 - 2.265 1.517 -2.520
ENSG00000253729 E098 143.7638347 0.0306348397 2.519210e-13 6.769598e-12 8 47953620 47953719 100 - 2.327 1.620 -2.376
ENSG00000253729 E099 131.6964950 0.0661733284 7.217627e-07 6.181825e-06 8 47953807 47953919 113 - 2.280 1.645 -2.134
ENSG00000253729 E100 69.9220134 0.0469549239 8.863676e-07 7.445559e-06 8 47954338 47954349 12 - 2.000 1.424 -1.955
ENSG00000253729 E101 110.9631440 0.0364743419 1.814288e-09 2.560997e-08 8 47954350 47954446 97 - 2.204 1.585 -2.086
ENSG00000253729 E102 95.6328182 0.0166297067 6.666586e-18 3.335881e-16 8 47955874 47955948 75 - 2.153 1.436 -2.426
ENSG00000253729 E103 96.4972004 0.0260280113 3.064067e-13 8.123123e-12 8 47957171 47957263 93 - 2.154 1.460 -2.344
ENSG00000253729 E104 95.8722399 0.0564172641 1.197827e-08 1.455672e-07 8 47957355 47957431 77 - 2.153 1.442 -2.405
ENSG00000253729 E105 0.7406253 0.0155814202 7.285573e-02 1.480918e-01 8 47959115 47959309 195 - 0.350 0.000 -11.726
ENSG00000253729 E106 81.5070966 0.0717247277 1.771798e-06 1.394118e-05 8 47959973 47960178 206 - 2.076 1.425 -2.206