ENSG00000249042

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000504300 ENSG00000249042 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 2.219181 3.560576 1.454886 0.1808504 0.02354431 -1.285368 0.4736733 0.4606945 0.65645723 0.05655933 0.06284231 0.5017213 0.25895833 0.12963333 0.45263333 0.323000000 1.230401e-05 1.230401e-05 TRUE FALSE
ENST00000508000 ENSG00000249042 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 2.219181 3.560576 1.454886 0.1808504 0.02354431 -1.285368 0.1266013 0.1216879 0.05530447 0.07167456 0.05530447 -1.0118691 0.07725417 0.03286667 0.03683333 0.003966667 9.264298e-01 1.230401e-05 TRUE FALSE
MSTRG.26487.4 ENSG00000249042 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA   2.219181 3.560576 1.454886 0.1808504 0.02354431 -1.285368 1.2332097 2.0806664 0.60322418 0.11720632 0.07362699 -1.7694764 0.51364583 0.58496667 0.41320000 -0.171766667 9.250468e-02 1.230401e-05 TRUE FALSE
MSTRG.26487.5 ENSG00000249042 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA   2.219181 3.560576 1.454886 0.1808504 0.02354431 -1.285368 0.3364481 0.8612315 0.12279551 0.08644333 0.06971588 -2.7138499 0.11600000 0.24236667 0.08563333 -0.156733333 1.728373e-01 1.230401e-05   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000249042 E001 0.000000       5 80411231 80414467 3237 -      
ENSG00000249042 E002 9.028436 0.0021080804 4.871386e-12 1.067395e-10 5 80478198 80479160 963 - 1.376 0.578 -3.031
ENSG00000249042 E003 52.231265 0.0218377837 3.009303e-10 4.896533e-09 5 80479161 80482809 3649 - 1.973 1.490 -1.636
ENSG00000249042 E004 13.378769 0.0038696425 1.972635e-02 5.090789e-02 5 80482810 80482926 117 - 0.996 1.160 0.594
ENSG00000249042 E005 41.572553 0.0005853563 8.374348e-08 8.632578e-07 5 80482927 80483166 240 - 1.402 1.631 0.784
ENSG00000249042 E006 34.202505 0.0011151360 1.079270e-05 7.116017e-05 5 80485466 80485561 96 - 1.338 1.542 0.703
ENSG00000249042 E007 2.502459 0.0063899516 8.986318e-02 1.749185e-01 5 80485878 80485890 13 - 0.299 0.553 1.377
ENSG00000249042 E008 12.325371 0.0383095620 5.468853e-02 1.174482e-01 5 80485891 80486220 330 - 0.925 1.106 0.667
ENSG00000249042 E009 1.773364 0.1372590810 3.926146e-01 5.365609e-01 5 80487773 80487777 5 - 0.299 0.459 0.925
ENSG00000249042 E010 32.316529 0.0017376203 1.183358e-02 3.313286e-02 5 80487778 80488095 318 - 1.410 1.491 0.277