ENSG00000247828

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000496733 ENSG00000247828 HEK293_OSMI2_2hA HEK293_TMG_2hB TMEM161B-DT lncRNA lncRNA 7.432355 5.688269 7.594233 0.3795634 0.5024729 0.4162791 0.4155779 0.05471853 0.4708081 0.02748612 0.05666966 2.893210336 0.05138750 0.01030000 0.06156667 0.05126667 0.0001400802 3.343777e-05    
ENST00000666808 ENSG00000247828 HEK293_OSMI2_2hA HEK293_TMG_2hB TMEM161B-DT lncRNA lncRNA 7.432355 5.688269 7.594233 0.3795634 0.5024729 0.4162791 0.1841769 0.03280250 0.4704504 0.03280250 0.04032140 3.488620480 0.02736250 0.00600000 0.06276667 0.05676667 0.0002568188 3.343777e-05    
ENST00000668128 ENSG00000247828 HEK293_OSMI2_2hA HEK293_TMG_2hB TMEM161B-DT lncRNA lncRNA 7.432355 5.688269 7.594233 0.3795634 0.5024729 0.4162791 0.5872795 0.12843204 0.6166429 0.12843204 0.05696131 2.178465705 0.07693750 0.02483333 0.08113333 0.05630000 0.2062983478 3.343777e-05    
MSTRG.26548.11 ENSG00000247828 HEK293_OSMI2_2hA HEK293_TMG_2hB TMEM161B-DT lncRNA   7.432355 5.688269 7.594233 0.3795634 0.5024729 0.4162791 0.5509350 0.77801833 0.3096047 0.43786990 0.24015674 -1.301940625 0.07464583 0.12856667 0.03710000 -0.09146667 0.7337052738 3.343777e-05    
MSTRG.26548.26 ENSG00000247828 HEK293_OSMI2_2hA HEK293_TMG_2hB TMEM161B-DT lncRNA   7.432355 5.688269 7.594233 0.3795634 0.5024729 0.4162791 0.8211728 0.55664298 1.1255639 0.36704006 0.07912507 1.002896889 0.11338750 0.10613333 0.15080000 0.04466667 0.6934994637 3.343777e-05    
MSTRG.26548.28 ENSG00000247828 HEK293_OSMI2_2hA HEK293_TMG_2hB TMEM161B-DT lncRNA   7.432355 5.688269 7.594233 0.3795634 0.5024729 0.4162791 2.3227875 1.87765624 1.4882101 0.17757347 0.21319414 -0.333356115 0.31607500 0.33000000 0.20040000 -0.12960000 0.1427414650 3.343777e-05    
MSTRG.26548.62 ENSG00000247828 HEK293_OSMI2_2hA HEK293_TMG_2hB TMEM161B-DT lncRNA   7.432355 5.688269 7.594233 0.3795634 0.5024729 0.4162791 0.4160350 0.51428922 0.5120829 0.18658688 0.18442677 -0.006083868 0.05685417 0.08710000 0.06493333 -0.02216667 0.8348660750 3.343777e-05    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000247828 E001 0.0000000       5 88268868 88268870 3 +      
ENSG00000247828 E002 0.0000000       5 88268871 88268890 20 +      
ENSG00000247828 E003 0.0000000       5 88268891 88268894 4 +      
ENSG00000247828 E004 0.0000000       5 88268895 88268898 4 +      
ENSG00000247828 E005 1.9802524 0.0368987086 4.953160e-01 6.321340e-01 5 88268899 88268914 16 + 0.523 0.390 -0.682
ENSG00000247828 E006 2.2016976 0.0977931827 7.746699e-01 8.547805e-01 5 88268915 88268916 2 + 0.523 0.455 -0.337
ENSG00000247828 E007 2.2016976 0.0977931827 7.746699e-01 8.547805e-01 5 88268917 88268917 1 + 0.523 0.455 -0.337
ENSG00000247828 E008 2.3499908 0.0192105999 9.468919e-01 9.706613e-01 5 88268918 88268922 5 + 0.524 0.502 -0.101
ENSG00000247828 E009 2.6465772 0.0062923885 6.337248e-01 7.483467e-01 5 88268923 88268928 6 + 0.524 0.591 0.309
ENSG00000247828 E010 2.6465772 0.0062923885 6.337248e-01 7.483467e-01 5 88268929 88268930 2 + 0.524 0.591 0.309
ENSG00000247828 E011 2.6465772 0.0062923885 6.337248e-01 7.483467e-01 5 88268931 88268932 2 + 0.524 0.591 0.309
ENSG00000247828 E012 9.4625442 0.0034469749 3.044977e-02 7.284252e-02 5 88268933 88268976 44 + 0.904 1.124 0.809
ENSG00000247828 E013 10.4622036 0.0017032913 2.887883e-02 6.975835e-02 5 88268977 88268986 10 + 0.949 1.158 0.762
ENSG00000247828 E014 10.7201805 0.0016927290 1.064203e-02 3.031228e-02 5 88268987 88268994 8 + 0.935 1.180 0.893
ENSG00000247828 E015 10.0547981 0.0017046471 4.621687e-03 1.487965e-02 5 88268995 88268995 1 + 0.888 1.169 1.032
ENSG00000247828 E016 11.8960316 0.0015984357 2.885279e-03 9.926226e-03 5 88268996 88269009 14 + 0.963 1.238 0.992
ENSG00000247828 E017 13.5662822 0.0020911716 8.642718e-04 3.488446e-03 5 88269010 88269014 5 + 1.003 1.297 1.053
ENSG00000247828 E018 13.5662822 0.0020911716 8.642718e-04 3.488446e-03 5 88269015 88269015 1 + 1.003 1.297 1.053
ENSG00000247828 E019 13.7479866 0.0022972958 6.221069e-04 2.613801e-03 5 88269016 88269018 3 + 1.003 1.305 1.080
ENSG00000247828 E020 14.9543174 0.0018301965 2.046464e-03 7.369253e-03 5 88269019 88269023 5 + 1.062 1.320 0.919
ENSG00000247828 E021 15.2477964 0.0107857955 6.601023e-03 2.018830e-02 5 88269024 88269027 4 + 1.073 1.326 0.901
ENSG00000247828 E022 1.4329874 0.0470717862 5.388333e-01 6.702144e-01 5 88269028 88269032 5 + 0.440 0.320 -0.689
ENSG00000247828 E023 1.5802364 0.0495256192 3.970184e-01 5.407963e-01 5 88269033 88269033 1 + 0.484 0.320 -0.911
ENSG00000247828 E024 2.5464596 0.0432663002 1.589708e-01 2.737544e-01 5 88269034 88269035 2 + 0.654 0.390 -1.271
ENSG00000247828 E025 4.0577802 0.0521773272 8.227636e-01 8.882526e-01 5 88269036 88269037 2 + 0.682 0.702 0.086
ENSG00000247828 E026 4.2060733 0.0256642366 6.844690e-01 7.874334e-01 5 88269038 88269038 1 + 0.681 0.730 0.201
ENSG00000247828 E027 6.0861184 0.0138057564 9.534632e-01 9.748656e-01 5 88269039 88269041 3 + 0.854 0.833 -0.080
ENSG00000247828 E028 9.2143103 0.0045235502 8.815904e-01 9.281171e-01 5 88269042 88269046 5 + 1.015 0.987 -0.105
ENSG00000247828 E029 11.7813026 0.0313805590 4.522816e-01 5.931502e-01 5 88269047 88269049 3 + 1.062 1.140 0.281
ENSG00000247828 E030 16.3842079 0.0330708744 2.314391e-01 3.641981e-01 5 88269050 88269063 14 + 1.169 1.295 0.444
ENSG00000247828 E031 23.5656495 0.0026508926 3.498180e-02 8.161874e-02 5 88269064 88269072 9 + 1.314 1.455 0.491
ENSG00000247828 E032 24.1954556 0.0013175543 1.969791e-02 5.084767e-02 5 88269073 88269075 3 + 1.320 1.471 0.525
ENSG00000247828 E033 22.8743446 0.0010208507 3.034708e-02 7.265374e-02 5 88269076 88269077 2 + 1.301 1.444 0.495
ENSG00000247828 E034 37.2649645 0.0005530805 6.017028e-03 1.865704e-02 5 88269078 88269119 42 + 1.509 1.651 0.485
ENSG00000247828 E035 6.2621513 0.0155735918 1.250873e-01 2.272614e-01 5 88269468 88269617 150 + 0.949 0.729 -0.859
ENSG00000247828 E036 5.7053954 0.1212340301 2.983155e-01 4.397574e-01 5 88269618 88269687 70 + 0.905 0.706 -0.785
ENSG00000247828 E037 13.9647551 0.1142515816 6.732612e-02 1.389087e-01 5 88269688 88270499 812 + 1.302 0.978 -1.164
ENSG00000247828 E038 2.1400997 0.0068962986 5.310911e-01 6.635863e-01 5 88270500 88270525 26 + 0.560 0.449 -0.541
ENSG00000247828 E039 74.3450986 0.0004181609 1.821331e-07 1.759091e-06 5 88270526 88270585 60 + 1.772 1.968 0.660
ENSG00000247828 E040 3.6538034 0.0068060815 2.923307e-02 7.045682e-02 5 88270586 88270741 156 + 0.797 0.449 -1.538
ENSG00000247828 E041 32.7441608 0.0006940075 1.553655e-36 4.241143e-34 5 88270742 88275910 5169 + 1.785 0.756 -3.671
ENSG00000247828 E042 51.1819853 0.0005259581 7.368052e-37 2.067934e-34 5 88275911 88281072 5162 + 1.941 1.200 -2.539
ENSG00000247828 E043 2.6530111 0.0067584908 2.334382e-02 5.846664e-02 5 88281073 88281143 71 + 0.707 0.320 -1.913
ENSG00000247828 E044 2.3605894 0.0065042747 5.380259e-02 1.159148e-01 5 88281144 88281197 54 + 0.654 0.320 -1.691
ENSG00000247828 E045 10.9531595 0.0015964989 3.750102e-07 3.399749e-06 5 88281198 88281850 653 + 1.268 0.698 -2.139
ENSG00000247828 E046 4.3954728 0.0133966660 1.812231e-02 4.739177e-02 5 88281851 88282041 191 + 0.871 0.502 -1.564
ENSG00000247828 E047 40.9368243 0.0007356668 3.984931e-01 5.422436e-01 5 88282042 88282106 65 + 1.610 1.644 0.115
ENSG00000247828 E048 9.4407754 0.0017811925 1.545333e-01 2.677949e-01 5 88282107 88282602 496 + 0.949 1.087 0.507
ENSG00000247828 E049 4.1991950 0.0399344494 3.234966e-01 4.668231e-01 5 88282603 88282714 112 + 0.797 0.627 -0.704
ENSG00000247828 E050 19.7157994 0.0009565894 3.553562e-01 4.997019e-01 5 88282715 88282719 5 + 1.355 1.273 -0.287
ENSG00000247828 E051 25.0340221 0.0008016921 9.170343e-01 9.515925e-01 5 88282720 88282756 37 + 1.427 1.409 -0.064
ENSG00000247828 E052 41.3982942 0.0037024532 8.425122e-01 9.018714e-01 5 88282757 88282866 110 + 1.632 1.632 0.000
ENSG00000247828 E053 1.5680304 0.0119977700 3.725379e-01 5.169840e-01 5 88282867 88283009 143 + 0.484 0.319 -0.915
ENSG00000247828 E054 7.7292612 0.0128571095 5.298637e-01 6.625902e-01 5 88283010 88283086 77 + 0.904 0.970 0.247
ENSG00000247828 E055 14.1405529 0.0792216215 8.028041e-04 3.269321e-03 5 88283087 88285740 2654 + 1.372 0.791 -2.121
ENSG00000247828 E056 8.5238381 0.0019982437 4.507539e-01 5.917941e-01 5 88285741 88285743 3 + 1.027 0.935 -0.344
ENSG00000247828 E057 29.8016050 0.0047650357 8.570325e-01 9.116660e-01 5 88285744 88285851 108 + 1.501 1.476 -0.085
ENSG00000247828 E058 20.5315960 0.0078320856 1.499082e-03 5.632730e-03 5 88285852 88287435 1584 + 1.450 1.159 -1.019
ENSG00000247828 E059 24.8639782 0.0163409287 5.777849e-01 7.029846e-01 5 88287436 88287438 3 + 1.397 1.439 0.144
ENSG00000247828 E060 43.2443358 0.0103753309 3.571448e-01 5.015568e-01 5 88287439 88287622 184 + 1.620 1.674 0.183
ENSG00000247828 E061 10.0157744 0.0017585999 4.382495e-03 1.421321e-02 5 88287623 88290200 2578 + 1.169 0.855 -1.159
ENSG00000247828 E062 2.9788691 0.0101130709 1.217596e-01 2.224354e-01 5 88291384 88291476 93 + 0.707 0.449 -1.176
ENSG00000247828 E063 3.6224936 0.0087904338 1.961229e-01 3.213730e-01 5 88291477 88291804 328 + 0.754 0.548 -0.885
ENSG00000247828 E064 3.7987751 0.0042759984 3.977918e-02 9.061669e-02 5 88291805 88292567 763 + 0.817 0.501 -1.356
ENSG00000247828 E065 1.0414660 0.0118845312 8.920096e-03 2.608169e-02 5 88292568 88292643 76 + 0.484 0.000 -15.042
ENSG00000247828 E066 10.7875302 0.0279889109 4.764298e-13 1.230514e-11 5 88292644 88296332 3689 + 1.343 0.134 -5.859
ENSG00000247828 E067 0.3729606 0.0300904572 8.565388e-01 9.112789e-01 5 88319650 88319834 185 + 0.111 0.134 0.311
ENSG00000247828 E068 0.3030308 0.2939896230 3.567818e-01   5 88321694 88323471 1778 + 0.201 0.000 -12.786
ENSG00000247828 E069 0.1817044 0.0393842228 3.855197e-01   5 88346894 88348601 1708 + 0.000 0.134 11.926
ENSG00000247828 E070 0.0000000       5 88392181 88392194 14 +      
ENSG00000247828 E071 0.1482932 0.0410978717 3.879015e-01   5 88392195 88392342 148 + 0.000 0.134 11.916
ENSG00000247828 E072 0.1515154 0.0424246876 6.149927e-01   5 88408981 88409291 311 + 0.111 0.000 -12.454
ENSG00000247828 E073 0.6727692 0.0523041260 8.097531e-01 8.792395e-01 5 88409292 88410072 781 + 0.200 0.237 0.308
ENSG00000247828 E074 16.3943101 0.0011945659 7.567329e-04 3.103517e-03 5 88410073 88410194 122 + 1.094 1.363 0.953
ENSG00000247828 E075 0.6599951 0.0174783629 2.091292e-02 5.340697e-02 5 88417187 88417491 305 + 0.000 0.388 13.855
ENSG00000247828 E076 0.0000000       5 88424428 88424548 121 +      
ENSG00000247828 E077 0.5901540 0.0219054905 4.385686e-01 5.804412e-01 5 88426641 88426801 161 + 0.274 0.134 -1.278
ENSG00000247828 E078 0.4439371 0.0215646061 1.294261e-01 2.333683e-01 5 88426802 88427376 575 + 0.274 0.000 -13.984
ENSG00000247828 E079 45.4935342 0.0137067795 1.943093e-05 1.209148e-04 5 88436273 88436537 265 + 1.489 1.807 1.080
ENSG00000247828 E080 12.3721957 0.0647004415 3.933101e-02 8.978702e-02 5 88436538 88439337 2800 + 0.935 1.279 1.242
ENSG00000247828 E081 0.0000000       5 88446528 88446568 41 +