ENSG00000241973

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000255882 ENSG00000241973 HEK293_OSMI2_2hA HEK293_TMG_2hB PI4KA protein_coding protein_coding 56.9228 85.87092 34.14387 2.912265 1.190356 -1.330289 23.653145 25.151233 23.95554 3.642589 0.5257777 -0.07024136 0.47247500 0.29143333 0.70226667 0.41083333 1.676193e-12 5.616656e-30 FALSE TRUE
ENST00000399213 ENSG00000241973 HEK293_OSMI2_2hA HEK293_TMG_2hB PI4KA protein_coding protein_coding 56.9228 85.87092 34.14387 2.912265 1.190356 -1.330289 7.465122 22.649283 0.00000 2.823718 0.0000000 -11.14588649 0.08846667 0.26650000 0.00000000 -0.26650000 5.616656e-30 5.616656e-30 FALSE TRUE
ENST00000477245 ENSG00000241973 HEK293_OSMI2_2hA HEK293_TMG_2hB PI4KA protein_coding retained_intron 56.9228 85.87092 34.14387 2.912265 1.190356 -1.330289 10.495657 23.625514 1.55440 3.162172 0.1803735 -3.91727487 0.14082917 0.27436667 0.04533333 -0.22903333 1.652904e-15 5.616656e-30 FALSE TRUE
MSTRG.21688.14 ENSG00000241973 HEK293_OSMI2_2hA HEK293_TMG_2hB PI4KA protein_coding   56.9228 85.87092 34.14387 2.912265 1.190356 -1.330289 4.580897 5.157685 0.00000 1.352756 0.0000000 -9.01337422 0.09065833 0.05996667 0.00000000 -0.05996667 8.058465e-14 5.616656e-30 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000241973 E001 1.2929087 0.1673120962 5.187677e-02 1.125040e-01 22 20707691 20707692 2 - 0.000 0.445 12.879
ENSG00000241973 E002 13.0123113 0.0217652550 2.966462e-02 7.130552e-02 22 20707693 20707702 10 - 0.898 1.180 1.035
ENSG00000241973 E003 13.4906021 0.0243992469 2.280804e-02 5.734307e-02 22 20707703 20707703 1 - 0.898 1.198 1.100
ENSG00000241973 E004 17.2784944 0.0229873021 1.919448e-03 6.975919e-03 22 20707704 20707709 6 - 0.922 1.313 1.409
ENSG00000241973 E005 40.6090001 0.0077110706 1.726436e-02 4.553346e-02 22 20707710 20707718 9 - 1.442 1.624 0.621
ENSG00000241973 E006 49.1142741 0.0172030971 7.568870e-03 2.269224e-02 22 20707719 20707726 8 - 1.483 1.717 0.798
ENSG00000241973 E007 51.9864717 0.0147486361 3.029297e-03 1.035232e-02 22 20707727 20707733 7 - 1.496 1.744 0.843
ENSG00000241973 E008 805.1273964 0.0099162528 5.445769e-09 7.058115e-08 22 20707734 20708098 365 - 2.633 2.934 1.002
ENSG00000241973 E009 556.4849730 0.0099160940 1.801553e-06 1.415473e-05 22 20709296 20709379 84 - 2.511 2.765 0.846
ENSG00000241973 E010 10.2971050 0.0445387692 8.235388e-01 8.888208e-01 22 20709380 20709499 120 - 0.989 1.033 0.162
ENSG00000241973 E011 531.2111903 0.0049359771 6.401766e-09 8.190136e-08 22 20709908 20709997 90 - 2.511 2.741 0.765
ENSG00000241973 E012 33.6516951 0.0137508115 3.124512e-01 4.549734e-01 22 20709998 20710698 701 - 1.551 1.470 -0.275
ENSG00000241973 E013 410.9318866 0.0032015410 1.345552e-07 1.333494e-06 22 20710699 20710751 53 - 2.435 2.620 0.615
ENSG00000241973 E014 452.6726772 0.0033782685 2.718278e-08 3.086052e-07 22 20710752 20710858 107 - 2.468 2.664 0.650
ENSG00000241973 E015 76.2254087 0.0110991678 2.086903e-02 5.330937e-02 22 20710859 20711301 443 - 1.944 1.796 -0.501
ENSG00000241973 E016 28.5752242 0.0034981555 8.427550e-03 2.485714e-02 22 20711302 20711340 39 - 1.550 1.364 -0.641
ENSG00000241973 E017 286.3801844 0.0056328257 3.093028e-07 2.853911e-06 22 20711341 20711438 98 - 2.240 2.473 0.776
ENSG00000241973 E018 89.4321595 0.0056258065 3.636886e-04 1.633469e-03 22 20711439 20711461 23 - 1.757 1.963 0.695
ENSG00000241973 E019 3.6944110 0.0043018998 2.434671e-02 6.053034e-02 22 20711462 20711477 16 - 0.844 0.519 -1.378
ENSG00000241973 E020 88.9873302 0.0015287422 7.951993e-07 6.747049e-06 22 20712486 20712507 22 - 1.732 1.968 0.797
ENSG00000241973 E021 149.1177564 0.0031629880 1.641447e-08 1.944396e-07 22 20712508 20712611 104 - 1.942 2.194 0.845
ENSG00000241973 E022 214.3960191 0.0003136863 5.991503e-16 2.330266e-14 22 20712693 20712797 105 - 2.109 2.348 0.801
ENSG00000241973 E023 23.4976147 0.0008106245 2.834862e-08 3.206688e-07 22 20712798 20713280 483 - 1.583 1.190 -1.361
ENSG00000241973 E024 338.7325336 0.0001766673 9.440347e-22 7.299777e-20 22 20713281 20713390 110 - 2.319 2.542 0.744
ENSG00000241973 E025 351.1178674 0.0003826128 5.191347e-11 9.617496e-10 22 20714458 20714528 71 - 2.388 2.543 0.517
ENSG00000241973 E026 376.3401170 0.0009881083 2.294250e-08 2.645075e-07 22 20714628 20714700 73 - 2.424 2.571 0.488
ENSG00000241973 E027 431.9164504 0.0001707452 2.463489e-06 1.879281e-05 22 20717708 20717778 71 - 2.522 2.617 0.316
ENSG00000241973 E028 0.9212829 0.0186299144 7.575821e-01 8.423522e-01 22 20717779 20717844 66 - 0.283 0.229 -0.410
ENSG00000241973 E029 469.0119690 0.0002082687 8.778920e-09 1.093608e-07 22 20718693 20718822 130 - 2.544 2.657 0.378
ENSG00000241973 E030 337.3676495 0.0030454655 7.989461e-05 4.273234e-04 22 20721298 20721418 121 - 2.381 2.523 0.472
ENSG00000241973 E031 4.9045867 0.0064520560 5.221302e-01 6.559893e-01 22 20721419 20722009 591 - 0.670 0.766 0.392
ENSG00000241973 E032 0.4031496 0.0244675919 4.619426e-01 6.018654e-01 22 20726316 20726487 172 - 0.000 0.165 10.963
ENSG00000241973 E033 166.6911763 0.0008438572 1.323221e-02 3.645515e-02 22 20726488 20726497 10 - 2.116 2.201 0.284
ENSG00000241973 E034 241.4310052 0.0020146438 1.178766e-03 4.569358e-03 22 20726498 20726541 44 - 2.257 2.370 0.376
ENSG00000241973 E035 401.9264946 0.0011388059 7.311868e-06 5.011075e-05 22 20727230 20727397 168 - 2.474 2.592 0.395
ENSG00000241973 E036 4.5525633 0.0044852521 1.522530e-02 4.099879e-02 22 20727569 20727773 205 - 0.377 0.783 1.877
ENSG00000241973 E037 347.2769832 0.0001779700 4.008329e-06 2.915256e-05 22 20727774 20727864 91 - 2.422 2.525 0.343
ENSG00000241973 E038 451.7693444 0.0011365220 6.991623e-03 2.120285e-02 22 20729313 20729506 194 - 2.562 2.631 0.231
ENSG00000241973 E039 245.2707242 0.0002550129 4.331666e-02 9.714253e-02 22 20729632 20729711 80 - 2.308 2.362 0.179
ENSG00000241973 E040 329.2227209 0.0020589658 3.213330e-01 4.645572e-01 22 20729892 20730011 120 - 2.450 2.484 0.113
ENSG00000241973 E041 304.6350000 0.0009057529 4.841379e-01 6.221576e-01 22 20732971 20733098 128 - 2.450 2.435 -0.051
ENSG00000241973 E042 202.8979655 0.0002594657 8.023028e-01 8.740640e-01 22 20733736 20733843 108 - 2.267 2.263 -0.016
ENSG00000241973 E043 1.2792939 0.0219562289 8.023498e-01 8.740765e-01 22 20733844 20734042 199 - 0.377 0.332 -0.264
ENSG00000241973 E044 187.5291222 0.0001846049 9.087287e-02 1.765249e-01 22 20734043 20734194 152 - 2.195 2.245 0.169
ENSG00000241973 E045 146.4172274 0.0002186654 3.321381e-04 1.509079e-03 22 20734395 20734476 82 - 2.036 2.157 0.405
ENSG00000241973 E046 210.6243501 0.0002123192 4.759250e-02 1.048987e-01 22 20734477 20734553 77 - 2.239 2.296 0.188
ENSG00000241973 E047 1.9489281 0.0081262191 8.319780e-01 8.947103e-01 22 20734554 20734667 114 - 0.453 0.417 -0.190
ENSG00000241973 E048 2.4615724 0.0062803250 2.024033e-02 5.198663e-02 22 20736409 20736866 458 - 0.164 0.601 2.701
ENSG00000241973 E049 288.9653406 0.0009713332 1.307342e-02 3.608119e-02 22 20742228 20742355 128 - 2.365 2.437 0.238
ENSG00000241973 E050 346.8032562 0.0051076598 9.562755e-01 9.766158e-01 22 20742608 20742764 157 - 2.497 2.499 0.008
ENSG00000241973 E051 0.4396707 0.0250021471 2.061188e-02 5.277120e-02 22 20742765 20742917 153 - 0.377 0.000 -13.818
ENSG00000241973 E052 253.3455449 0.0003602685 7.562606e-02 1.525071e-01 22 20744628 20744720 93 - 2.391 2.348 -0.141
ENSG00000241973 E053 0.9556260 0.0193525355 4.073706e-01 5.509480e-01 22 20747484 20747582 99 - 0.377 0.228 -1.000
ENSG00000241973 E054 307.1957405 0.0007696595 1.441923e-02 3.917624e-02 22 20747583 20747702 120 - 2.485 2.427 -0.193
ENSG00000241973 E055 246.1758305 0.0001792038 1.720317e-02 4.539247e-02 22 20749905 20749994 90 - 2.387 2.331 -0.188
ENSG00000241973 E056 223.6484143 0.0017857817 2.368476e-01 3.705300e-01 22 20751293 20751376 84 - 2.331 2.298 -0.112
ENSG00000241973 E057 222.0466752 0.0007199076 2.870272e-01 4.274911e-01 22 20751674 20751755 82 - 2.325 2.298 -0.090
ENSG00000241973 E058 286.7351810 0.0023716294 1.194407e-01 2.191479e-01 22 20752903 20753027 125 - 2.449 2.404 -0.149
ENSG00000241973 E059 180.5200967 0.0010386426 5.056631e-03 1.608617e-02 22 20753110 20753145 36 - 2.276 2.191 -0.284
ENSG00000241973 E060 180.7801061 0.0024964334 8.926072e-03 2.609434e-02 22 20753146 20753180 35 - 2.281 2.190 -0.304
ENSG00000241973 E061 183.5155170 0.0014586482 1.791217e-03 6.571402e-03 22 20761304 20761352 49 - 2.292 2.194 -0.329
ENSG00000241973 E062 172.1693899 0.0010735969 2.120412e-03 7.597271e-03 22 20761353 20761386 34 - 2.262 2.166 -0.319
ENSG00000241973 E063 2.8818538 0.0057972184 1.011172e-01 1.921785e-01 22 20764615 20764816 202 - 0.711 0.454 -1.168
ENSG00000241973 E064 287.6569665 0.0034709203 5.415358e-04 2.315488e-03 22 20764817 20764950 134 - 2.499 2.381 -0.391
ENSG00000241973 E065 261.2555295 0.0069744076 8.955995e-03 2.616930e-02 22 20765100 20765236 137 - 2.453 2.342 -0.371
ENSG00000241973 E066 225.0431935 0.0039096538 1.012103e-03 4.000416e-03 22 20765585 20765693 109 - 2.395 2.273 -0.409
ENSG00000241973 E067 151.4319377 0.0026537996 1.217738e-02 3.395546e-02 22 20793193 20793243 51 - 2.205 2.111 -0.312
ENSG00000241973 E068 0.0000000       22 20793335 20793374 40 -      
ENSG00000241973 E069 307.4316240 0.0048642239 7.238425e-05 3.916987e-04 22 20796146 20796314 169 - 2.549 2.399 -0.501
ENSG00000241973 E070 2.3821794 0.0063862912 3.355911e-01 4.793794e-01 22 20798478 20798583 106 - 0.377 0.548 0.875
ENSG00000241973 E071 260.8257844 0.0089214766 6.864239e-04 2.849713e-03 22 20798584 20798687 104 - 2.486 2.322 -0.548
ENSG00000241973 E072 3.1257217 0.0344090837 1.169440e-01 2.156007e-01 22 20798940 20799092 153 - 0.377 0.667 1.402
ENSG00000241973 E073 340.8265788 0.0037704603 2.052944e-08 2.388235e-07 22 20799093 20799276 184 - 2.618 2.426 -0.639
ENSG00000241973 E074 244.1900336 0.0009758387 3.122888e-18 1.619107e-16 22 20799671 20799766 96 - 2.498 2.263 -0.784
ENSG00000241973 E075 260.8108869 0.0014710715 1.599206e-14 5.120242e-13 22 20801973 20802105 133 - 2.516 2.298 -0.729
ENSG00000241973 E076 244.7758433 0.0014116961 2.280222e-11 4.481133e-10 22 20803191 20803320 130 - 2.473 2.280 -0.641
ENSG00000241973 E077 160.3867246 0.0005634724 4.218795e-07 3.787858e-06 22 20804300 20804394 95 - 2.268 2.115 -0.511
ENSG00000241973 E078 84.6101429 0.0017145396 9.045009e-04 3.629864e-03 22 20804395 20804400 6 - 1.990 1.846 -0.481
ENSG00000241973 E079 269.6364617 0.0033865759 8.594286e-05 4.560294e-04 22 20804974 20805165 192 - 2.481 2.347 -0.448
ENSG00000241973 E080 192.7036298 0.0042535929 4.862769e-08 5.257002e-07 22 20807362 20807447 86 - 2.387 2.171 -0.724
ENSG00000241973 E081 121.3490236 0.0045398231 2.005358e-08 2.337644e-07 22 20807448 20807458 11 - 2.209 1.957 -0.847
ENSG00000241973 E082 170.7224951 0.0038318764 1.007728e-08 1.241455e-07 22 20810967 20811026 60 - 2.341 2.113 -0.760
ENSG00000241973 E083 108.3140044 0.0036999620 5.335978e-07 4.694149e-06 22 20811027 20811032 6 - 2.140 1.918 -0.745
ENSG00000241973 E084 269.8409546 0.0027976440 2.993277e-13 7.945457e-12 22 20813358 20813506 149 - 2.544 2.305 -0.798
ENSG00000241973 E085 173.5225629 0.0024285221 1.702920e-14 5.427543e-13 22 20818483 20818549 67 - 2.372 2.100 -0.909
ENSG00000241973 E086 289.5141386 0.0044368733 5.016064e-10 7.847703e-09 22 20819641 20819864 224 - 2.571 2.338 -0.777
ENSG00000241973 E087 112.9878658 0.0082530517 6.233028e-04 2.618077e-03 22 20819865 20819900 36 - 2.133 1.950 -0.614
ENSG00000241973 E088 143.9819331 0.0120372001 1.501953e-04 7.478265e-04 22 20820539 20820611 73 - 2.261 2.042 -0.733
ENSG00000241973 E089 91.7302873 0.0102485386 6.205203e-04 2.608581e-03 22 20824326 20824346 21 - 2.056 1.855 -0.676
ENSG00000241973 E090 138.2598191 0.0056332607 3.244500e-07 2.980896e-06 22 20824347 20824414 68 - 2.254 2.019 -0.787
ENSG00000241973 E091 145.6175318 0.0135755275 1.989323e-05 1.234551e-04 22 20834562 20834655 94 - 2.293 2.031 -0.874
ENSG00000241973 E092 125.5133488 0.0179354421 1.914267e-04 9.271908e-04 22 20838615 20838731 117 - 2.224 1.970 -0.851
ENSG00000241973 E093 0.4772466 0.0205988621 1.000000e+00 1.000000e+00 22 20857200 20857342 143 - 0.164 0.164 -0.001
ENSG00000241973 E094 0.1817044 0.0392618092 1.000000e+00   22 20858338 20858569 232 - 0.000 0.090 9.961
ENSG00000241973 E095 71.2082752 0.0163125752 3.660685e-06 2.688215e-05 22 20858570 20858812 243 - 2.023 1.688 -1.130
ENSG00000241973 E096 0.2903454 0.3595081448 1.265269e-01   22 20859123 20859417 295 - 0.283 0.000 -13.226