ENSG00000235954

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000425112 ENSG00000235954 HEK293_OSMI2_2hA HEK293_TMG_2hB TTC28-AS1 lncRNA lncRNA 12.92473 10.24729 13.5879 0.882897 0.209297 0.4067345 1.1766864 0.8058813 0.9836171 0.4032984 0.54641400 0.2843307 0.08665833 0.07516667 0.07200000 -0.003166667 1.000000e+00 4.991648e-13   FALSE
ENST00000436996 ENSG00000235954 HEK293_OSMI2_2hA HEK293_TMG_2hB TTC28-AS1 lncRNA retained_intron 12.92473 10.24729 13.5879 0.882897 0.209297 0.4067345 0.8881250 0.0000000 1.3680236 0.0000000 0.19827020 7.1064568 0.06006250 0.00000000 0.10080000 0.100800000 4.991648e-13 4.991648e-13   FALSE
ENST00000437713 ENSG00000235954 HEK293_OSMI2_2hA HEK293_TMG_2hB TTC28-AS1 lncRNA lncRNA 12.92473 10.24729 13.5879 0.882897 0.209297 0.4067345 4.2119018 3.8620176 6.4690359 0.4417267 0.04048787 0.7426936 0.32647500 0.37586667 0.47630000 0.100433333 5.959938e-02 4.991648e-13   FALSE
ENST00000454996 ENSG00000235954 HEK293_OSMI2_2hA HEK293_TMG_2hB TTC28-AS1 lncRNA lncRNA 12.92473 10.24729 13.5879 0.882897 0.209297 0.4067345 1.1285755 0.8150852 0.1417761 0.4451962 0.07143381 -2.4425989 0.08939167 0.08206667 0.01060000 -0.071466667 6.360838e-01 4.991648e-13   FALSE
ENST00000659843 ENSG00000235954 HEK293_OSMI2_2hA HEK293_TMG_2hB TTC28-AS1 lncRNA lncRNA 12.92473 10.24729 13.5879 0.882897 0.209297 0.4067345 0.9831710 1.0708848 0.7676894 0.3012304 0.03991201 -0.4749469 0.08050833 0.10900000 0.05646667 -0.052533333 3.873568e-01 4.991648e-13 FALSE FALSE
ENST00000662329 ENSG00000235954 HEK293_OSMI2_2hA HEK293_TMG_2hB TTC28-AS1 lncRNA lncRNA 12.92473 10.24729 13.5879 0.882897 0.209297 0.4067345 1.4747515 1.3726700 1.2030519 0.1429745 0.28141166 -0.1888155 0.11412500 0.13583333 0.08830000 -0.047533333 3.891629e-01 4.991648e-13   FALSE
ENST00000662424 ENSG00000235954 HEK293_OSMI2_2hA HEK293_TMG_2hB TTC28-AS1 lncRNA lncRNA 12.92473 10.24729 13.5879 0.882897 0.209297 0.4067345 0.4132899 0.2081890 1.1627312 0.2081890 0.37086358 2.4262221 0.03222917 0.01740000 0.08583333 0.068433333 1.663387e-01 4.991648e-13   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000235954 E001 0.3289534 0.0297845639 9.495159e-01   22 27919376 27919383 8 + 0.117 0.127 0.135
ENSG00000235954 E002 0.3289534 0.0297845639 9.495159e-01   22 27919384 27919387 4 + 0.117 0.127 0.135
ENSG00000235954 E003 0.3289534 0.0297845639 9.495159e-01   22 27919388 27919391 4 + 0.117 0.127 0.135
ENSG00000235954 E004 0.7019140 0.0177520358 9.291457e-01 9.594463e-01 22 27919392 27919400 9 + 0.210 0.226 0.136
ENSG00000235954 E005 0.5546650 0.0214539523 5.158217e-01 6.504408e-01 22 27919401 27919403 3 + 0.118 0.226 1.137
ENSG00000235954 E006 1.3349293 0.0106175712 9.049313e-01 9.434881e-01 22 27919404 27919420 17 + 0.351 0.374 0.134
ENSG00000235954 E007 1.4821784 0.0094954515 8.395493e-01 8.997623e-01 22 27919421 27919422 2 + 0.407 0.374 -0.188
ENSG00000235954 E008 1.4821784 0.0094954515 8.395493e-01 8.997623e-01 22 27919423 27919428 6 + 0.407 0.374 -0.188
ENSG00000235954 E009 1.5574213 0.0084535368 2.555096e-01 3.924083e-01 22 27919429 27919432 4 + 0.502 0.306 -1.089
ENSG00000235954 E010 1.8572299 0.0096190734 3.137960e-01 4.564269e-01 22 27919433 27919436 4 + 0.542 0.373 -0.868
ENSG00000235954 E011 2.3042875 0.0275424495 2.725474e-01 4.114763e-01 22 27919437 27919437 1 + 0.614 0.431 -0.873
ENSG00000235954 E012 5.7173370 0.0030978715 6.844472e-01 7.874322e-01 22 27919438 27919456 19 + 0.858 0.810 -0.189
ENSG00000235954 E013 8.0348721 0.0021547619 7.662444e-01 8.488005e-01 22 27919457 27919465 9 + 0.943 0.979 0.133
ENSG00000235954 E014 8.6176392 0.0019388158 8.197621e-01 8.862216e-01 22 27919466 27919467 2 + 1.000 0.979 -0.081
ENSG00000235954 E015 8.7648882 0.0019541176 7.238526e-01 8.175790e-01 22 27919468 27919469 2 + 1.014 0.979 -0.129
ENSG00000235954 E016 8.7950772 0.0021978799 9.317917e-01 9.610262e-01 22 27919470 27919471 2 + 1.000 0.994 -0.024
ENSG00000235954 E017 12.5436026 0.0163094692 1.992232e-01 3.252576e-01 22 27919472 27919483 12 + 1.201 1.063 -0.498
ENSG00000235954 E018 15.2437520 0.0013952498 1.304021e-01 2.347222e-01 22 27919484 27919490 7 + 1.272 1.145 -0.451
ENSG00000235954 E019 15.4620767 0.0016711264 1.115678e-01 2.078573e-01 22 27919491 27919492 2 + 1.279 1.145 -0.475
ENSG00000235954 E020 18.9233762 0.0012014302 5.656296e-02 1.206966e-01 22 27919493 27919497 5 + 1.369 1.222 -0.512
ENSG00000235954 E021 18.2612161 0.0012626385 5.053171e-02 1.101063e-01 22 27919498 27919498 1 + 1.357 1.204 -0.535
ENSG00000235954 E022 58.4414968 0.0004332632 3.735944e-06 2.738386e-05 22 27919499 27919545 47 + 1.869 1.663 -0.698
ENSG00000235954 E023 1.8069671 0.0097126302 1.717379e-01 2.904750e-01 22 27919546 27919722 177 + 0.542 0.306 -1.279
ENSG00000235954 E024 2.8042344 0.0119271258 8.717997e-01 9.215429e-01 22 27919723 27919966 244 + 0.579 0.608 0.130
ENSG00000235954 E025 45.1507053 0.0005192468 2.700954e-07 2.522617e-06 22 27922018 27922021 4 + 1.783 1.519 -0.896
ENSG00000235954 E026 87.4749164 0.0022288332 1.533163e-06 1.223064e-05 22 27922022 27922178 157 + 2.039 1.842 -0.663
ENSG00000235954 E027 10.7749844 0.0016643131 1.573273e-02 4.213283e-02 22 27922179 27922227 49 + 1.184 0.946 -0.866
ENSG00000235954 E028 9.5121749 0.0060810636 2.337008e-02 5.851882e-02 22 27922228 27922241 14 + 1.138 0.893 -0.903
ENSG00000235954 E029 121.4132329 0.0043918902 6.971428e-03 2.114906e-02 22 27922242 27924346 2105 + 2.141 2.032 -0.365
ENSG00000235954 E030 104.5121272 0.0108700290 8.262591e-01 8.906685e-01 22 27924347 27924963 617 + 2.015 2.032 0.057
ENSG00000235954 E031 20.1224547 0.0009347644 8.356271e-01 8.971983e-01 22 27935151 27935230 80 + 1.320 1.338 0.064
ENSG00000235954 E032 0.0000000       22 27940018 27940019 2 +      
ENSG00000235954 E033 5.1973046 0.0031129549 9.579496e-02 1.840799e-01 22 27940020 27940171 152 + 0.894 0.677 -0.866
ENSG00000235954 E034 0.0000000       22 27972521 27973089 569 +      
ENSG00000235954 E035 42.7860702 0.0077342694 3.791356e-02 8.718241e-02 22 27985692 27986392 701 + 1.565 1.710 0.493
ENSG00000235954 E036 2.3313665 0.0081552437 4.940831e-01 6.310749e-01 22 27989882 27990026 145 + 0.457 0.571 0.549
ENSG00000235954 E037 1.4789707 0.1172648307 5.865981e-01 7.101324e-01 22 27990027 27990672 646 + 0.457 0.368 -0.485
ENSG00000235954 E038 0.6633060 0.0226195870 3.593125e-01 5.036601e-01 22 27991470 27992468 999 + 0.286 0.128 -1.448
ENSG00000235954 E039 0.1451727 0.0432696588 5.343117e-01   22 27992469 27992927 459 + 0.117 0.000 -9.472
ENSG00000235954 E040 0.0000000       22 27992928 27993112 185 +      
ENSG00000235954 E041 0.0000000       22 27993113 27993123 11 +      
ENSG00000235954 E042 1.3221552 0.0102274497 1.224512e-01 2.234403e-01 22 27993124 27993535 412 + 0.210 0.483 1.718
ENSG00000235954 E043 0.4427912 0.1710835874 6.543556e-01 7.645361e-01 22 27994473 27994473 1 + 0.210 0.126 -0.879
ENSG00000235954 E044 1.2876999 0.0102120649 4.130467e-01 5.565808e-01 22 27994474 27994559 86 + 0.286 0.432 0.870
ENSG00000235954 E045 1.2856235 0.0102124436 4.129182e-01 5.564764e-01 22 27994560 27994653 94 + 0.286 0.432 0.870
ENSG00000235954 E046 0.0000000       22 27994654 27994654 1 +      
ENSG00000235954 E047 20.5044758 0.0010003894 7.575410e-01 8.423362e-01 22 27997411 27997739 329 + 1.345 1.325 -0.071
ENSG00000235954 E048 3.7118139 0.0626739143 9.870884e-01 9.959838e-01 22 27997740 27997985 246 + 0.675 0.676 0.008
ENSG00000235954 E049 10.1424921 0.0673501672 7.736566e-01 8.539603e-01 22 27997986 27998071 86 + 1.075 1.030 -0.162
ENSG00000235954 E050 9.7145633 0.0218103690 7.783270e-01 8.573487e-01 22 27998072 27998152 81 + 1.052 1.021 -0.113
ENSG00000235954 E051 6.9332676 0.0557113448 3.545661e-01 4.988808e-01 22 27998153 27998513 361 + 0.958 0.816 -0.540
ENSG00000235954 E052 2.5306380 0.2155536371 7.605288e-01 8.446117e-01 22 27998514 27998603 90 + 0.578 0.495 -0.389
ENSG00000235954 E053 12.3880876 0.0018579563 2.754267e-02 6.709627e-02 22 27998604 27998838 235 + 1.000 1.213 0.768
ENSG00000235954 E054 1.6389052 0.1938318897 4.502155e-01 5.913517e-01 22 27998839 27999243 405 + 0.503 0.365 -0.730
ENSG00000235954 E055 0.3697384 0.0248564251 1.766682e-01 2.969159e-01 22 27999395 27999429 35 + 0.000 0.226 9.866
ENSG00000235954 E056 52.9461552 0.0028391582 4.054244e-07 3.651017e-06 22 27999430 28000437 1008 + 1.565 1.838 0.927
ENSG00000235954 E057 28.9564697 0.0007960789 2.771412e-06 2.090360e-05 22 28000438 28000895 458 + 1.286 1.597 1.072
ENSG00000235954 E058 51.3920350 0.0077618643 5.539840e-06 3.903977e-05 22 28000896 28001658 763 + 1.546 1.839 0.991
ENSG00000235954 E059 38.0239068 0.0005622435 2.411810e-14 7.495246e-13 22 28001659 28002216 558 + 1.300 1.755 1.561
ENSG00000235954 E060 29.5107543 0.0007314030 1.568317e-09 2.243258e-08 22 28002217 28002483 267 + 1.234 1.636 1.387
ENSG00000235954 E061 11.6590766 0.0403823492 6.817781e-03 2.074873e-02 22 28002484 28002679 196 + 0.876 1.234 1.308
ENSG00000235954 E062 3.8664513 0.0052370209 6.992746e-01 7.990758e-01 22 28006529 28008581 2053 + 0.728 0.676 -0.216