ENSG00000235437

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000433061 ENSG00000235437 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC01278 lncRNA lncRNA 16.81153 26.82466 13.37838 0.5289819 0.6037253 -1.003117 0.2364406 0.0000000 1.1381825 0.0000000 0.5891464 6.8432081 0.01627083 0.00000000 0.08183333 0.08183333 1.179187e-01 3.073964e-05   FALSE
ENST00000608623 ENSG00000235437 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC01278 lncRNA retained_intron 16.81153 26.82466 13.37838 0.5289819 0.6037253 -1.003117 1.0347529 0.3707919 0.6900554 0.1756604 0.0417479 0.8784666 0.07125417 0.01376667 0.05183333 0.03806667 4.837952e-02 3.073964e-05 FALSE FALSE
ENST00000609143 ENSG00000235437 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC01278 lncRNA lncRNA 16.81153 26.82466 13.37838 0.5289819 0.6037253 -1.003117 2.4074380 2.4380853 2.0654134 0.9686960 0.6221771 -0.2382551 0.14753750 0.09216667 0.15470000 0.06253333 6.780628e-01 3.073964e-05 FALSE TRUE
ENST00000609401 ENSG00000235437 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC01278 lncRNA lncRNA 16.81153 26.82466 13.37838 0.5289819 0.6037253 -1.003117 0.9653014 1.1504908 1.0152259 0.6232259 0.4723057 -0.1787933 0.06349583 0.04200000 0.07706667 0.03506667 7.618726e-01 3.073964e-05 FALSE TRUE
ENST00000665831 ENSG00000235437 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC01278 lncRNA lncRNA 16.81153 26.82466 13.37838 0.5289819 0.6037253 -1.003117 1.8859074 3.4021282 1.2611332 0.3198582 0.1954663 -1.4245566 0.09895000 0.12720000 0.09350000 -0.03370000 4.066548e-01 3.073964e-05   FALSE
ENST00000669422 ENSG00000235437 HEK293_OSMI2_2hA HEK293_TMG_2hB LINC01278 lncRNA lncRNA 16.81153 26.82466 13.37838 0.5289819 0.6037253 -1.003117 8.1183603 16.5599381 4.7200663 0.4923767 0.4356478 -1.8086359 0.46050833 0.61713333 0.35506667 -0.26206667 3.073964e-05 3.073964e-05   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000235437 E001 0.2987644 0.0292462040 6.844562e-02   X 63222993 63223891 899 - 0.287 0.000 -13.366
ENSG00000235437 E002 0.0000000       X 63238244 63238395 152 -      
ENSG00000235437 E003 0.0000000       X 63238396 63238477 82 -      
ENSG00000235437 E004 0.0000000       X 63238478 63238489 12 -      
ENSG00000235437 E005 0.0000000       X 63238490 63238506 17 -      
ENSG00000235437 E006 0.2214452 0.0376316166 1.000000e+00   X 63238507 63238595 89 - 0.000 0.089 11.906
ENSG00000235437 E007 0.2214452 0.0376316166 1.000000e+00   X 63238596 63238623 28 - 0.000 0.089 11.906
ENSG00000235437 E008 0.2214452 0.0376316166 1.000000e+00   X 63238624 63238629 6 - 0.000 0.089 11.906
ENSG00000235437 E009 0.2214452 0.0376316166 1.000000e+00   X 63238630 63238661 32 - 0.000 0.089 11.906
ENSG00000235437 E010 0.0000000       X 63238662 63238664 3 -      
ENSG00000235437 E011 0.0000000       X 63238665 63238666 2 -      
ENSG00000235437 E012 0.2214452 0.0376316166 1.000000e+00   X 63238667 63238734 68 - 0.000 0.089 11.906
ENSG00000235437 E013 0.6685028 0.0176304069 4.812004e-01 6.194374e-01 X 63238993 63239059 67 - 0.287 0.162 -1.047
ENSG00000235437 E014 0.0000000       X 63239060 63239786 727 -      
ENSG00000235437 E015 0.4407149 0.0229390716 2.354072e-01 3.688462e-01 X 63239787 63239830 44 - 0.287 0.089 -2.049
ENSG00000235437 E016 0.0000000       X 63253449 63253539 91 -      
ENSG00000235437 E017 0.6955713 0.0174981069 4.829579e-01 6.210498e-01 X 63259668 63259817 150 - 0.287 0.162 -1.045
ENSG00000235437 E018 0.2214452 0.0376316166 1.000000e+00   X 63307506 63307538 33 - 0.000 0.089 11.906
ENSG00000235437 E019 0.9567719 0.0154701595 9.470663e-02 1.824438e-01 X 63309911 63309988 78 - 0.458 0.162 -2.047
ENSG00000235437 E020 2.4380329 0.0882325704 3.015122e-02 7.226519e-02 X 63310854 63312325 1472 - 0.754 0.331 -2.036
ENSG00000235437 E021 0.8794552 0.0169878463 5.563785e-04 2.371299e-03 X 63314408 63314996 589 - 0.580 0.000 -16.868
ENSG00000235437 E022 0.9170311 0.0157678724 9.461854e-02 1.823093e-01 X 63314997 63315107 111 - 0.458 0.162 -2.048
ENSG00000235437 E023 1.2920680 0.0101471097 8.953745e-02 1.744179e-01 X 63343206 63343289 84 - 0.524 0.225 -1.784
ENSG00000235437 E024 0.0000000       X 63345489 63345571 83 -      
ENSG00000235437 E025 0.0000000       X 63396558 63396737 180 -      
ENSG00000235437 E026 0.0000000       X 63396738 63396772 35 -      
ENSG00000235437 E027 0.0000000       X 63396773 63396806 34 -      
ENSG00000235437 E028 0.0000000       X 63396807 63397487 681 -      
ENSG00000235437 E029 0.4386386 0.0267704499 2.366029e-01 3.702542e-01 X 63397488 63397506 19 - 0.287 0.088 -2.049
ENSG00000235437 E030 0.4386386 0.0267704499 2.366029e-01 3.702542e-01 X 63397507 63397539 33 - 0.287 0.088 -2.049
ENSG00000235437 E031 1.4757484 0.3244738546 2.987696e-01 4.402438e-01 X 63397540 63397669 130 - 0.523 0.315 -1.132
ENSG00000235437 E032 4.9726200 0.0034358360 5.471049e-02 1.174904e-01 X 63397670 63398080 411 - 0.904 0.643 -1.047
ENSG00000235437 E033 1.8048882 0.0098636752 6.390922e-01 7.525599e-01 X 63398081 63398089 9 - 0.458 0.373 -0.459
ENSG00000235437 E034 0.6299079 0.0195712695 8.802290e-02 1.721164e-01 X 63398090 63398161 72 - 0.381 0.089 -2.632
ENSG00000235437 E035 0.5911862 0.0183985961 5.690526e-03 1.779230e-02 X 63398162 63398933 772 - 0.458 0.000 -16.326
ENSG00000235437 E036 0.2998086 0.0297141133 5.988627e-01   X 63398934 63399428 495 - 0.167 0.088 -1.050
ENSG00000235437 E037 0.0000000       X 63399429 63399440 12 -      
ENSG00000235437 E038 0.7490443 0.0827610855 2.897484e-03 9.962788e-03 X 63399441 63399780 340 - 0.524 0.000 -16.226
ENSG00000235437 E039 4.5812266 0.0039095760 7.964556e-04 3.246678e-03 X 63399781 63399903 123 - 0.974 0.514 -1.894
ENSG00000235437 E040 0.2998086 0.0297141133 5.988627e-01   X 63425948 63426052 105 - 0.167 0.088 -1.050
ENSG00000235437 E041 1.0684302 0.0123873635 3.787266e-01 5.230254e-01 X 63426558 63426558 1 - 0.167 0.329 1.275
ENSG00000235437 E042 1.0684302 0.0123873635 3.787266e-01 5.230254e-01 X 63426559 63426559 1 - 0.167 0.329 1.275
ENSG00000235437 E043 7.8489506 0.0754918880 6.643331e-02 1.374483e-01 X 63426560 63426566 7 - 0.631 0.971 1.353
ENSG00000235437 E044 14.9208751 0.0409454398 4.652811e-02 1.029925e-01 X 63426567 63426571 5 - 0.928 1.217 1.050
ENSG00000235437 E045 15.3240247 0.0393979911 3.533647e-02 8.229624e-02 X 63426572 63426574 3 - 0.928 1.230 1.094
ENSG00000235437 E046 21.1969087 0.0364735638 5.279635e-02 1.141324e-01 X 63426575 63426581 7 - 1.103 1.358 0.900
ENSG00000235437 E047 78.3646629 0.0100619678 6.484672e-04 2.710608e-03 X 63426582 63426696 115 - 1.684 1.909 0.761
ENSG00000235437 E048 143.4887894 0.0003281350 2.970149e-13 7.891808e-12 X 63426697 63426891 195 - 1.931 2.173 0.811
ENSG00000235437 E049 131.6092663 0.0003411924 2.186711e-11 4.310329e-10 X 63426892 63426996 105 - 1.901 2.133 0.777
ENSG00000235437 E050 163.5015416 0.0036553891 6.248494e-02 1.308258e-01 X 63426997 63427874 878 - 2.222 2.150 -0.240
ENSG00000235437 E051 42.5314885 0.0005613403 1.550332e-02 4.163735e-02 X 63427875 63428005 131 - 1.688 1.552 -0.462
ENSG00000235437 E052 126.3494135 0.0005187246 1.549900e-17 7.401661e-16 X 63428006 63428981 976 - 2.231 1.961 -0.905
ENSG00000235437 E053 35.9896458 0.0078068703 3.942140e-08 4.341510e-07 X 63428982 63430965 1984 - 1.761 1.375 -1.319
ENSG00000235437 E054 8.1771198 0.0034711549 2.964185e-09 4.025780e-08 X 63430966 63431612 647 - 1.284 0.620 -2.526
ENSG00000235437 E055 133.8677787 0.0003334821 8.069563e-02 1.606358e-01 X 63432364 63432491 128 - 2.045 2.099 0.180
ENSG00000235437 E056 0.0000000       X 63509942 63509943 2 -      
ENSG00000235437 E057 12.6093085 0.0034069788 1.565394e-01 2.704899e-01 X 63509944 63510079 136 - 1.190 1.049 -0.509
ENSG00000235437 E058 48.2705776 0.0011768800 1.254879e-01 2.278511e-01 X 63516910 63517082 173 - 1.708 1.623 -0.289
ENSG00000235437 E059 0.0000000       X 63517083 63517100 18 -      
ENSG00000235437 E060 170.3738269 0.0003321059 5.569058e-01 6.854568e-01 X 63560832 63561095 264 - 2.181 2.194 0.046