ENSG00000234456

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000414797 ENSG00000234456 HEK293_OSMI2_2hA HEK293_TMG_2hB MAGI2-AS3 lncRNA lncRNA 11.33126 9.501341 16.04518 0.8297482 0.2472051 0.7553186 4.8485500 4.1593963 7.3492882 0.5320867 0.4906732 0.8197277 0.42192917 0.43450000 0.45806667 0.02356667 8.739218e-01 3.83825e-09 TRUE  
ENST00000448195 ENSG00000234456 HEK293_OSMI2_2hA HEK293_TMG_2hB MAGI2-AS3 lncRNA lncRNA 11.33126 9.501341 16.04518 0.8297482 0.2472051 0.7553186 1.2990599 1.4867951 0.9707323 0.4931300 0.3328437 -0.6099454 0.12569167 0.15830000 0.06040000 -0.09790000 2.557283e-01 3.83825e-09 TRUE  
ENST00000667729 ENSG00000234456 HEK293_OSMI2_2hA HEK293_TMG_2hB MAGI2-AS3 lncRNA lncRNA 11.33126 9.501341 16.04518 0.8297482 0.2472051 0.7553186 0.4747215 0.0000000 1.3074242 0.0000000 0.2950367 7.0415762 0.03066250 0.00000000 0.08116667 0.08116667 3.838250e-09 3.83825e-09 TRUE  
ENST00000667887 ENSG00000234456 HEK293_OSMI2_2hA HEK293_TMG_2hB MAGI2-AS3 lncRNA lncRNA 11.33126 9.501341 16.04518 0.8297482 0.2472051 0.7553186 0.9309539 0.9865307 0.5704883 0.2258487 0.2853036 -0.7796471 0.09476250 0.10786667 0.03510000 -0.07276667 4.658423e-01 3.83825e-09 TRUE  
ENST00000669576 ENSG00000234456 HEK293_OSMI2_2hA HEK293_TMG_2hB MAGI2-AS3 lncRNA lncRNA 11.33126 9.501341 16.04518 0.8297482 0.2472051 0.7553186 0.5636401 0.2652272 1.2855410 0.1341514 0.1219128 2.2348596 0.04522083 0.02566667 0.08020000 0.05453333 1.670311e-01 3.83825e-09    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000234456 E001 0.4772466 0.0209189554 2.274319e-01 3.593340e-01 7 79452877 79452881 5 + 0.094 0.272 1.844
ENSG00000234456 E002 1.2897762 0.0940175559 1.172093e-01 2.159637e-01 7 79452882 79452939 58 + 0.238 0.500 1.572
ENSG00000234456 E003 1.5112214 0.0497842358 4.832294e-02 1.062010e-01 7 79452940 79453002 63 + 0.238 0.558 1.844
ENSG00000234456 E004 4.4670584 0.0853803063 9.111036e-02 1.768716e-01 7 79453003 79453157 155 + 0.619 0.853 0.956
ENSG00000234456 E005 2.6268836 0.0108768886 3.494318e-01 4.936415e-01 7 79453158 79453191 34 + 0.503 0.608 0.483
ENSG00000234456 E006 0.3686942 0.0318777417 5.835970e-01 7.076902e-01 7 79453560 79453564 5 + 0.094 0.158 0.849
ENSG00000234456 E007 0.5503986 0.0238735109 2.254868e-01 3.569842e-01 7 79453565 79453571 7 + 0.094 0.273 1.848
ENSG00000234456 E008 1.1448044 0.1496022721 1.250786e-01 2.272495e-01 7 79453572 79453586 15 + 0.172 0.447 1.886
ENSG00000234456 E009 1.1448044 0.1496022721 1.250786e-01 2.272495e-01 7 79453587 79453587 1 + 0.172 0.447 1.886
ENSG00000234456 E010 2.6906822 0.2963418868 7.452010e-02 1.507712e-01 7 79453588 79453614 27 + 0.295 0.759 2.285
ENSG00000234456 E011 3.0853135 0.1154632105 2.891655e-02 6.983788e-02 7 79453615 79453630 16 + 0.390 0.776 1.773
ENSG00000234456 E012 5.1449589 0.1200362915 4.177002e-02 9.430361e-02 7 79453631 79453655 25 + 0.592 0.942 1.415
ENSG00000234456 E013 0.1472490 0.0437249421 1.000000e+00   7 79453673 79453705 33 + 0.094 0.000 -10.780
ENSG00000234456 E014 0.1472490 0.0437249421 1.000000e+00   7 79453706 79453734 29 + 0.094 0.000 -10.780
ENSG00000234456 E015 0.1472490 0.0437249421 1.000000e+00   7 79453735 79453746 12 + 0.094 0.000 -10.780
ENSG00000234456 E016 0.1472490 0.0437249421 1.000000e+00   7 79453747 79453752 6 + 0.094 0.000 -10.780
ENSG00000234456 E017 0.6611159 0.0250255605 7.708176e-01 8.520430e-01 7 79453753 79453765 13 + 0.238 0.157 -0.737
ENSG00000234456 E018 1.6951925 0.2211974239 8.970672e-01 9.382632e-01 7 79453766 79453789 24 + 0.431 0.373 -0.316
ENSG00000234456 E019 2.9580286 0.0057584462 6.834827e-01 7.866809e-01 7 79453851 79453943 93 + 0.593 0.608 0.066
ENSG00000234456 E020 2.8118117 0.0052740530 9.278255e-01 9.585776e-01 7 79453944 79453949 6 + 0.593 0.558 -0.156
ENSG00000234456 E021 4.3650683 0.0035241741 4.048625e-01 5.485466e-01 7 79453950 79453959 10 + 0.785 0.608 -0.740
ENSG00000234456 E022 6.9470263 0.0024927531 8.013309e-01 8.734135e-01 7 79453960 79453975 16 + 0.905 0.877 -0.106
ENSG00000234456 E023 8.0164015 0.0020503478 3.058290e-01 4.479626e-01 7 79453976 79453979 4 + 0.931 0.988 0.212
ENSG00000234456 E024 9.5611358 0.0017558071 2.145783e-01 3.439509e-01 7 79453980 79453987 8 + 0.989 1.059 0.260
ENSG00000234456 E025 13.2491790 0.0013219644 2.328264e-01 3.657886e-01 7 79453988 79453999 12 + 1.127 1.175 0.173
ENSG00000234456 E026 16.4578133 0.0010782043 4.777611e-01 6.162665e-01 7 79454000 79454006 7 + 1.237 1.234 -0.012
ENSG00000234456 E027 18.5465283 0.0009831037 1.125028e-01 2.091941e-01 7 79454007 79454011 5 + 1.261 1.323 0.219
ENSG00000234456 E028 18.9236561 0.0009661488 1.663127e-01 2.833989e-01 7 79454012 79454014 3 + 1.278 1.323 0.159
ENSG00000234456 E029 27.1706890 0.0007408264 9.495969e-02 1.828216e-01 7 79454015 79454022 8 + 1.427 1.474 0.161
ENSG00000234456 E030 47.4155558 0.0025942000 1.508070e-02 4.067011e-02 7 79454023 79454064 42 + 1.653 1.722 0.237
ENSG00000234456 E031 48.6250085 0.0043802192 2.946541e-02 7.090301e-02 7 79454065 79454085 21 + 1.666 1.729 0.211
ENSG00000234456 E032 45.3504715 0.0014933468 1.643524e-02 4.369117e-02 7 79454086 79454092 7 + 1.636 1.701 0.220
ENSG00000234456 E033 65.2898971 0.0004174619 7.933146e-03 2.361148e-02 7 79454093 79454149 57 + 1.797 1.847 0.169
ENSG00000234456 E034 60.7894017 0.0004112123 6.491267e-02 1.348914e-01 7 79454150 79454184 35 + 1.778 1.796 0.060
ENSG00000234456 E035 59.5024669 0.0018489887 1.766150e-01 2.968477e-01 7 79454185 79454244 60 + 1.775 1.774 -0.002
ENSG00000234456 E036 3.1186401 0.0297152035 1.937743e-01 3.185163e-01 7 79454245 79454344 100 + 0.535 0.693 0.698
ENSG00000234456 E037 7.0031415 0.0036208518 4.283405e-01 5.711339e-01 7 79454345 79454828 484 + 0.955 0.795 -0.614
ENSG00000234456 E038 2.6999510 0.0074819674 6.788816e-01 7.832481e-01 7 79454829 79454865 37 + 0.619 0.502 -0.536
ENSG00000234456 E039 12.4499167 0.0016072538 9.625421e-01 9.803724e-01 7 79454866 79454885 20 + 1.150 1.091 -0.210
ENSG00000234456 E040 64.9133236 0.0042413788 8.396759e-02 1.657557e-01 7 79454886 79454921 36 + 1.804 1.827 0.078
ENSG00000234456 E041 50.4139435 0.0005424391 1.734057e-02 4.569076e-02 7 79454922 79454934 13 + 1.684 1.737 0.180
ENSG00000234456 E042 75.7286689 0.0004014044 3.697953e-02 8.543280e-02 7 79454935 79455007 73 + 1.874 1.893 0.064
ENSG00000234456 E043 3.1763439 0.0050100631 1.451333e-02 3.939347e-02 7 79455008 79455317 310 + 0.749 0.272 -2.403
ENSG00000234456 E044 2.2918056 0.0065158445 1.718737e-02 4.535710e-02 7 79455318 79455374 57 + 0.643 0.157 -2.961
ENSG00000234456 E045 4.3897269 0.0935726894 1.907274e-03 6.938329e-03 7 79455375 79455889 515 + 0.893 0.158 -3.957
ENSG00000234456 E046 3.6060368 0.0753555496 1.517680e-01 2.640680e-01 7 79455890 79455911 22 + 0.768 0.435 -1.496
ENSG00000234456 E047 5.6289627 0.0161258353 5.085356e-01 6.439359e-01 7 79455912 79456037 126 + 0.878 0.728 -0.595
ENSG00000234456 E048 4.8809506 0.0045103602 6.164484e-01 7.345028e-01 7 79456038 79456089 52 + 0.819 0.692 -0.510
ENSG00000234456 E049 6.9292238 0.0974983151 4.396788e-01 5.814271e-01 7 79456090 79456180 91 + 0.967 0.782 -0.710
ENSG00000234456 E050 18.1295787 0.0010204042 4.858234e-05 2.746003e-04 7 79456181 79458410 2230 + 1.407 0.968 -1.566
ENSG00000234456 E051 5.6676543 0.0046861279 2.012490e-01 3.277571e-01 7 79458411 79458658 248 + 0.768 0.878 0.430
ENSG00000234456 E052 4.8720645 0.1262995470 7.688278e-01 8.506017e-01 7 79458659 79458730 72 + 0.770 0.734 -0.143
ENSG00000234456 E053 1.4467039 0.0093609406 4.527359e-01 5.935598e-01 7 79458731 79458846 116 + 0.345 0.438 0.523
ENSG00000234456 E054 59.1777050 0.0004336554 8.207242e-02 1.627949e-01 7 79458847 79458865 19 + 1.769 1.783 0.048
ENSG00000234456 E055 123.4174601 0.0003137909 1.045897e-02 2.988388e-02 7 79458866 79458999 134 + 2.084 2.099 0.050
ENSG00000234456 E056 3.3506733 0.0045460131 1.421503e-01 2.509641e-01 7 79459000 79459406 407 + 0.730 0.438 -1.325
ENSG00000234456 E057 2.1089804 0.0277754360 3.901090e-01 5.341268e-01 7 79459407 79459453 47 + 0.565 0.363 -1.034
ENSG00000234456 E058 1.6836675 0.1570660540 1.536479e-01 2.666336e-01 7 79459454 79459535 82 + 0.534 0.159 -2.455
ENSG00000234456 E059 435.6739898 0.0075833217 4.368855e-16 1.728266e-14 7 79459536 79464979 5444 + 2.748 2.368 -1.266
ENSG00000234456 E060 39.5962193 0.0039444533 3.728078e-04 1.668651e-03 7 79464980 79467814 2835 + 1.700 1.390 -1.059
ENSG00000234456 E061 0.6017953 0.1788225742 2.117484e-01 3.405444e-01 7 79467815 79467906 92 + 0.295 0.000 -12.201
ENSG00000234456 E062 9.6971517 0.0129681935 2.581073e-01 3.953146e-01 7 79467907 79468896 990 + 1.085 0.879 -0.764
ENSG00000234456 E063 5.2832558 0.0043487923 8.936093e-01 9.359436e-01 7 79468897 79469431 535 + 0.802 0.763 -0.154
ENSG00000234456 E064 1.1405526 0.0113092149 5.609665e-01 6.888792e-01 7 79469432 79469446 15 + 0.295 0.363 0.431
ENSG00000234456 E065 10.2191444 0.0016655973 3.805836e-01 5.248515e-01 7 79469447 79470593 1147 + 1.030 1.060 0.108
ENSG00000234456 E066 52.4538686 0.0004885349 1.877334e-06 1.469528e-05 7 79470594 79470679 86 + 1.646 1.811 0.559
ENSG00000234456 E067 86.9080764 0.0003767370 1.823658e-22 1.531412e-20 7 79470783 79471208 426 + 1.790 2.090 1.008