ENSG00000230590

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000603037 ENSG00000230590 HEK293_OSMI2_2hA HEK293_TMG_2hB FTX lncRNA lncRNA 2.380264 1.272802 2.918118 0.07731454 0.0284664 1.190676 0.73665535 0.26620310 0.85631832 0.005740033 0.022522999 1.6491677 0.30919583 0.21113333 0.29356667 0.08243333 0.41533103 0.02482814 FALSE TRUE
ENST00000651703 ENSG00000230590 HEK293_OSMI2_2hA HEK293_TMG_2hB FTX lncRNA lncRNA 2.380264 1.272802 2.918118 0.07731454 0.0284664 1.190676 0.10498461 0.08889318 0.11383012 0.026195420 0.020425325 0.3244194 0.05235000 0.06786667 0.03893333 -0.02893333 0.74990551 0.02482814   FALSE
ENST00000652327 ENSG00000230590 HEK293_OSMI2_2hA HEK293_TMG_2hB FTX lncRNA lncRNA 2.380264 1.272802 2.918118 0.07731454 0.0284664 1.190676 0.23154668 0.23628156 0.04527145 0.059820365 0.045271451 -2.1557022 0.09086250 0.18900000 0.01583333 -0.17316667 0.02482814 0.02482814   FALSE
ENST00000652540 ENSG00000230590 HEK293_OSMI2_2hA HEK293_TMG_2hB FTX lncRNA lncRNA 2.380264 1.272802 2.918118 0.07731454 0.0284664 1.190676 0.06392252 0.00000000 0.16436126 0.000000000 0.083570537 4.1240076 0.02547500 0.00000000 0.05646667 0.05646667 0.35914291 0.02482814 FALSE FALSE
ENST00000656041 ENSG00000230590 HEK293_OSMI2_2hA HEK293_TMG_2hB FTX lncRNA lncRNA 2.380264 1.272802 2.918118 0.07731454 0.0284664 1.190676 0.08194648 0.09406965 0.00000000 0.047257470 0.000000000 -3.3794775 0.04126250 0.07843333 0.00000000 -0.07843333 0.03912936 0.02482814   FALSE
ENST00000657327 ENSG00000230590 HEK293_OSMI2_2hA HEK293_TMG_2hB FTX lncRNA lncRNA 2.380264 1.272802 2.918118 0.07731454 0.0284664 1.190676 0.11192261 0.13818221 0.40541715 0.071068575 0.008538339 1.4871885 0.05484583 0.10396667 0.13886667 0.03490000 0.78904459 0.02482814   FALSE
ENST00000657611 ENSG00000230590 HEK293_OSMI2_2hA HEK293_TMG_2hB FTX lncRNA lncRNA 2.380264 1.272802 2.918118 0.07731454 0.0284664 1.190676 0.04978888 0.09843778 0.07779789 0.037045624 0.077797893 -0.3046092 0.02629583 0.07680000 0.02636667 -0.05043333 0.46688853 0.02482814 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000230590 E001 0.0000000       X 73940435 73940525 91 -      
ENSG00000230590 E002 1.2846917 0.2038217222 0.0539352317 0.116150411 X 73946555 73948267 1713 - 0.157 0.545 2.525
ENSG00000230590 E003 0.0000000       X 73963955 73964208 254 -      
ENSG00000230590 E004 0.0000000       X 73964209 73964344 136 -      
ENSG00000230590 E005 0.0000000       X 73964345 73964542 198 -      
ENSG00000230590 E006 0.0000000       X 73980503 73980548 46 -      
ENSG00000230590 E007 0.0000000       X 73981896 73982605 710 -      
ENSG00000230590 E008 0.0000000       X 73998242 73999156 915 -      
ENSG00000230590 E009 0.0000000       X 73999157 73999174 18 -      
ENSG00000230590 E010 0.1515154 0.0431999811 1.0000000000   X 73999175 74000740 1566 - 0.085 0.000 -13.055
ENSG00000230590 E011 0.0000000       X 74003377 74003516 140 -      
ENSG00000230590 E012 0.2998086 0.0278895338 0.5352524863   X 74003517 74004512 996 - 0.085 0.172 1.160
ENSG00000230590 E013 0.1482932 0.0411597534 0.2055772079   X 74004513 74004620 108 - 0.000 0.172 14.052
ENSG00000230590 E014 0.1482932 0.0411597534 0.2055772079   X 74004621 74004683 63 - 0.000 0.172 14.052
ENSG00000230590 E015 0.4438354 0.0310919282 0.2013427273 0.327856215 X 74004684 74005856 1173 - 0.085 0.295 2.157
ENSG00000230590 E016 0.2987644 0.0271128567 0.5695497367   X 74005857 74008275 2419 - 0.157 0.000 -13.877
ENSG00000230590 E017 0.1515154 0.0431999811 1.0000000000   X 74008276 74008488 213 - 0.085 0.000 -13.055
ENSG00000230590 E018 0.2987644 0.0271128567 0.5695497367   X 74008489 74008752 264 - 0.157 0.000 -13.877
ENSG00000230590 E019 0.1472490 0.0434998852 1.0000000000   X 74008753 74008767 15 - 0.085 0.000 -13.054
ENSG00000230590 E020 0.0000000       X 74008768 74008874 107 -      
ENSG00000230590 E021 0.1472490 0.0434998852 1.0000000000   X 74008875 74009010 136 - 0.085 0.000 -13.054
ENSG00000230590 E022 0.2214452 0.0421577990 0.2024223075   X 74009011 74009388 378 - 0.000 0.173 14.057
ENSG00000230590 E023 0.2214452 0.0421577990 0.2024223075   X 74009389 74009918 530 - 0.000 0.173 14.057
ENSG00000230590 E024 0.0000000       X 74009919 74009949 31 -      
ENSG00000230590 E025 0.0000000       X 74009950 74010019 70 -      
ENSG00000230590 E026 0.1817044 0.0458201937 0.2026209680   X 74010415 74010548 134 - 0.000 0.172 14.050
ENSG00000230590 E027 0.1817044 0.0458201937 0.2026209680   X 74010549 74011093 545 - 0.000 0.172 14.050
ENSG00000230590 E028 0.4815130 0.0222235937 0.1951938766 0.320238202 X 74011094 74012945 1852 - 0.085 0.295 2.161
ENSG00000230590 E029 0.0000000       X 74028133 74028139 7 -      
ENSG00000230590 E030 0.0000000       X 74028140 74028250 111 -      
ENSG00000230590 E031 1.0758196 0.0122578619 0.4817326454 0.619928706 X 74028251 74028891 641 - 0.272 0.391 0.746
ENSG00000230590 E032 1.4747028 0.0107779966 0.1162632711 0.214629689 X 74028892 74029551 660 - 0.272 0.536 1.484
ENSG00000230590 E033 0.3697384 0.0274424043 0.0543001368 0.116768993 X 74029552 74031246 1695 - 0.000 0.295 14.918
ENSG00000230590 E034 0.1482932 0.0411597534 0.2055772079   X 74031247 74031307 61 - 0.000 0.172 14.052
ENSG00000230590 E035 0.6642364 0.0351352759 0.4124277210 0.555973604 X 74031308 74031595 288 - 0.157 0.295 1.163
ENSG00000230590 E036 0.8856816 0.1800962556 0.2083370650 0.336488845 X 74031596 74031813 218 - 0.157 0.395 1.768
ENSG00000230590 E037 0.3697384 0.0274424043 0.0543001368 0.116768993 X 74031814 74031816 3 - 0.000 0.295 14.918
ENSG00000230590 E038 0.3686942 0.0299680530 0.5292674433 0.662067452 X 74031817 74031840 24 - 0.085 0.173 1.166
ENSG00000230590 E039 0.1482932 0.0411597534 0.2055772079   X 74047871 74047929 59 - 0.000 0.172 14.052
ENSG00000230590 E040 0.0000000       X 74067483 74067492 10 -      
ENSG00000230590 E041 1.1178523 0.1966943851 0.4503445714 0.591440174 X 74067493 74067955 463 - 0.363 0.174 -1.407
ENSG00000230590 E042 0.1451727 0.0438297571 1.0000000000   X 74067956 74068088 133 - 0.085 0.000 -13.054
ENSG00000230590 E043 1.7243493 0.0964651582 0.2210894963 0.351715484 X 74068089 74068556 468 - 0.319 0.540 1.186
ENSG00000230590 E044 0.8407440 0.0166832428 0.6342510873 0.748772158 X 74068557 74068829 273 - 0.218 0.296 0.580
ENSG00000230590 E045 0.8772757 0.0521798361 0.1726025378 0.291593474 X 74068830 74069018 189 - 0.157 0.392 1.755
ENSG00000230590 E046 0.6966155 0.0173116352 0.0663852108 0.137369790 X 74069019 74069060 42 - 0.085 0.391 2.748
ENSG00000230590 E047 0.5149111 0.0215523901 0.1951019657 0.320115380 X 74069061 74069113 53 - 0.085 0.295 2.163
ENSG00000230590 E048 0.8438645 0.0147646561 0.1699544434 0.288145332 X 74069114 74069149 36 - 0.157 0.391 1.748
ENSG00000230590 E049 1.5124691 0.0101208531 0.8262836374 0.890679694 X 74069150 74069584 435 - 0.363 0.391 0.165
ENSG00000230590 E050 0.0000000       X 74101994 74102014 21 -      
ENSG00000230590 E051 0.0000000       X 74111679 74112334 656 -      
ENSG00000230590 E052 0.0000000       X 74130309 74130310 2 -      
ENSG00000230590 E053 0.2987644 0.0271128567 0.5695497367   X 74130311 74130728 418 - 0.157 0.000 -13.877
ENSG00000230590 E054 0.2987644 0.0271128567 0.5695497367   X 74130843 74130947 105 - 0.157 0.000 -13.877
ENSG00000230590 E055 0.0000000       X 74155845 74155891 47 -      
ENSG00000230590 E056 0.0000000       X 74156254 74156282 29 -      
ENSG00000230590 E057 0.0000000       X 74156283 74156286 4 -      
ENSG00000230590 E058 62.8778314 0.0530288383 0.7185571960 0.813624730 X 74196351 74200228 3878 - 1.810 1.734 -0.257
ENSG00000230590 E059 16.7762834 0.0014935277 0.0563871799 0.120404212 X 74200229 74201493 1265 - 1.290 1.103 -0.663
ENSG00000230590 E060 0.1515154 0.0431999811 1.0000000000   X 74201494 74201495 2 - 0.085 0.000 -13.055
ENSG00000230590 E061 19.7492808 0.0010335498 0.9753461303 0.988638990 X 74201496 74202514 1019 - 1.304 1.290 -0.049
ENSG00000230590 E062 4.8649135 0.0050371991 0.1703798050 0.288662418 X 74202515 74202646 132 - 0.691 0.865 0.692
ENSG00000230590 E063 3.0287870 0.1028083074 0.0708300651 0.144724377 X 74202647 74202650 4 - 0.437 0.796 1.597
ENSG00000230590 E064 2.6590486 0.0960523973 0.1498677761 0.261500630 X 74202651 74202652 2 - 0.437 0.724 1.305
ENSG00000230590 E065 2.6590486 0.0960523973 0.1498677761 0.261500630 X 74202653 74202653 1 - 0.437 0.724 1.305
ENSG00000230590 E066 3.1050621 0.1118824378 0.3467845363 0.490926747 X 74202654 74202670 17 - 0.530 0.723 0.842
ENSG00000230590 E067 2.6622709 0.0215810857 0.1738840648 0.293238392 X 74202671 74202674 4 - 0.471 0.688 0.987
ENSG00000230590 E068 2.5150218 0.0093846415 0.1060987994 0.199758495 X 74202675 74202678 4 - 0.438 0.689 1.160
ENSG00000230590 E069 2.5150218 0.0093846415 0.1060987994 0.199758495 X 74202679 74202682 4 - 0.438 0.689 1.160
ENSG00000230590 E070 2.8848620 0.0056397623 0.2056514708 0.333245411 X 74202683 74202693 11 - 0.502 0.690 0.840
ENSG00000230590 E071 24.5063699 0.0009006728 0.0063932316 0.019645724 X 74202694 74203809 1116 - 1.453 1.232 -0.770
ENSG00000230590 E072 5.0495952 0.0100102123 0.0528086521 0.114151214 X 74203810 74203909 100 - 0.851 0.536 -1.324
ENSG00000230590 E073 2.3161443 0.1816920037 0.2937185844 0.434767120 X 74203910 74203953 44 - 0.585 0.296 -1.542
ENSG00000230590 E074 1.8361134 0.0162005523 0.2959850802 0.437148580 X 74215397 74215536 140 - 0.502 0.295 -1.158
ENSG00000230590 E075 0.7363589 0.0156137445 0.1244240478 0.226286024 X 74217686 74217687 2 - 0.320 0.000 -14.835
ENSG00000230590 E076 3.1075600 0.0048477253 0.0002155304 0.001030606 X 74217688 74218376 689 - 0.746 0.000 -16.067
ENSG00000230590 E077 1.5500475 0.0097233434 0.4793431789 0.617722350 X 74218377 74218546 170 - 0.438 0.295 -0.837
ENSG00000230590 E078 0.3634088 0.6131868368 0.1376012593   X 74218547 74218609 63 - 0.000 0.297 14.471
ENSG00000230590 E079 0.5106578 0.4055751280 0.2777282235 0.417344928 X 74218610 74218725 116 - 0.085 0.297 2.175
ENSG00000230590 E080 0.0000000       X 74232489 74232608 120 -      
ENSG00000230590 E081 0.1817044 0.0458201937 0.2026209680   X 74241933 74242148 216 - 0.000 0.172 14.050
ENSG00000230590 E082 1.1791606 0.0127119360 0.1405169090 0.248747938 X 74245086 74245129 44 - 0.218 0.470 1.578
ENSG00000230590 E083 10.6283303 0.0017352577 0.0002774384 0.001287739 X 74245130 74245928 799 - 0.901 1.244 1.249
ENSG00000230590 E084 5.7485570 0.0030388684 0.0130507737 0.036030748 X 74245929 74246421 493 - 0.692 0.989 1.162
ENSG00000230590 E085 6.4536711 0.0225206553 0.5420269512 0.672892275 X 74246422 74246911 490 - 0.837 0.916 0.303
ENSG00000230590 E086 2.8344248 0.1725998905 0.4439838167 0.585571815 X 74246912 74247102 191 - 0.501 0.713 0.940
ENSG00000230590 E087 1.0683430 0.0154669587 0.0027246834 0.009446636 X 74247103 74247128 26 - 0.085 0.592 3.742
ENSG00000230590 E088 2.6936177 0.0115319725 0.0180455085 0.047231144 X 74247129 74247283 155 - 0.402 0.768 1.673
ENSG00000230590 E089 1.8896089 0.0322194344 0.4255881882 0.568528772 X 74247284 74247331 48 - 0.402 0.535 0.673
ENSG00000230590 E090 2.2478103 0.0879252741 0.4530428932 0.593827063 X 74247332 74247422 91 - 0.557 0.389 -0.848
ENSG00000230590 E091 1.1856066 0.0112754426 0.2456989635 0.380867269 X 74247423 74247424 2 - 0.402 0.172 -1.646
ENSG00000230590 E092 2.1884751 0.0462551644 0.5170478065 0.651522537 X 74247425 74247721 297 - 0.531 0.391 -0.711
ENSG00000230590 E093 1.6596189 0.0093743024 0.3732101273 0.517649457 X 74247722 74247923 202 - 0.471 0.295 -1.008
ENSG00000230590 E094 0.1482932 0.0411597534 0.2055772079   X 74260299 74261523 1225 - 0.000 0.172 14.052
ENSG00000230590 E095 0.2965864 0.0415364916 0.0574622997   X 74261912 74262030 119 - 0.000 0.294 14.895
ENSG00000230590 E096 0.0000000       X 74274260 74274341 82 -      
ENSG00000230590 E097 2.9507460 0.0054915439 0.0048681781 0.015562972 X 74274342 74274371 30 - 0.710 0.172 -3.086
ENSG00000230590 E098 2.8304517 0.0096278014 0.0074394349 0.022360441 X 74274372 74274410 39 - 0.691 0.172 -3.007
ENSG00000230590 E099 0.2944980 0.3005689868 0.6670715989   X 74274411 74274457 47 - 0.157 0.000 -13.706
ENSG00000230590 E100 0.5889961 0.8338366973 0.6195950047 0.736957720 X 74274458 74274565 108 - 0.271 0.000 -14.263
ENSG00000230590 E101 0.2966881 0.0295169274 0.5692080269   X 74278126 74278181 56 - 0.157 0.000 -13.875
ENSG00000230590 E102 0.6299079 0.0199622520 0.8538672409 0.909596194 X 74278182 74278212 31 - 0.218 0.172 -0.422
ENSG00000230590 E103 0.9996463 0.0136634743 0.3119310786 0.454450010 X 74278213 74278482 270 - 0.218 0.391 1.163
ENSG00000230590 E104 2.0711890 0.0072979193 0.4658628475 0.605469281 X 74278483 74279679 1197 - 0.531 0.391 -0.714
ENSG00000230590 E105 1.2639554 0.0103379569 0.7526448653 0.838767680 X 74279680 74280376 697 - 0.363 0.295 -0.422
ENSG00000230590 E106 0.4783925 0.0225498034 0.9061258373 0.944325876 X 74280377 74280393 17 - 0.157 0.172 0.163
ENSG00000230590 E107 6.4008858 0.0027502417 0.0174049095 0.045836050 X 74280394 74280494 101 - 0.946 0.593 -1.422
ENSG00000230590 E108 4.4716592 0.0038280924 0.2588140628 0.396134500 X 74280931 74281001 71 - 0.778 0.593 -0.776
ENSG00000230590 E109 4.3458508 0.0156363172 0.8071832331 0.877530368 X 74281002 74281085 84 - 0.710 0.730 0.083
ENSG00000230590 E110 0.0000000       X 74281086 74281701 616 -      
ENSG00000230590 E111 8.6000801 0.0236902257 0.1053714696 0.198661566 X 74281702 74281848 147 - 1.041 0.801 -0.911
ENSG00000230590 E112 1.4747940 0.0094100274 0.0152998679 0.041167397 X 74284743 74284944 202 - 0.502 0.000 -15.465
ENSG00000230590 E113 0.0000000       X 74284945 74284948 4 -      
ENSG00000230590 E114 0.5996172 0.2345916980 0.5077476072 0.643187484 X 74285915 74286170 256 - 0.157 0.290 1.123
ENSG00000230590 E115 0.1482932 0.0411597534 0.2055772079   X 74286171 74286326 156 - 0.000 0.172 14.052
ENSG00000230590 E116 0.0000000       X 74290395 74290430 36 -      
ENSG00000230590 E117 0.2214452 0.0421577990 0.2024223075   X 74290458 74290669 212 - 0.000 0.173 14.057
ENSG00000230590 E118 0.1515154 0.0431999811 1.0000000000   X 74290822 74291558 737 - 0.085 0.000 -13.055
ENSG00000230590 E119 0.1472490 0.0434998852 1.0000000000   X 74291559 74291757 199 - 0.085 0.000 -13.054
ENSG00000230590 E120 0.4449813 0.0229008471 0.9179923795 0.952174711 X 74291758 74292168 411 - 0.157 0.172 0.161
ENSG00000230590 E121 3.8502736 0.0043408524 0.0052484493 0.016606867 X 74292169 74292325 157 - 0.794 0.295 -2.423
ENSG00000230590 E122 1.4706414 0.0100204125 0.0153252220 0.041226365 X 74292326 74292426 101 - 0.502 0.000 -15.464
ENSG00000230590 E123 1.6691959 0.0084192458 0.8373035030 0.898279297 X 74292427 74292620 194 - 0.438 0.391 -0.254
ENSG00000230590 E124 1.5049830 0.0243973233 0.1411357744 0.249598583 X 74293352 74293574 223 - 0.471 0.172 -2.006