ENSG00000228065

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000598092 ENSG00000228065 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 4.255483 2.477388 5.863976 0.1327174 0.1725138 1.239706 0.2002867 0.16891405 0.5800647 0.16891405 0.21750895 1.721606358 0.05701667 0.06203333 0.0992000 3.716667e-02 0.53439658 0.04058971   FALSE
ENST00000601888 ENSG00000228065 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 4.255483 2.477388 5.863976 0.1327174 0.1725138 1.239706 0.3199237 0.22082432 0.5109040 0.09499393 0.04717824 1.174222192 0.07545833 0.08693333 0.0870000 6.666667e-05 1.00000000 0.04058971   FALSE
ENST00000657227 ENSG00000228065 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 4.255483 2.477388 5.863976 0.1327174 0.1725138 1.239706 0.4572573 0.24298638 0.5968658 0.09356080 0.21791943 1.262317893 0.09894167 0.09913333 0.1035333 4.400000e-03 1.00000000 0.04058971   FALSE
MSTRG.4061.11 ENSG00000228065 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA   4.255483 2.477388 5.863976 0.1327174 0.1725138 1.239706 0.4422489 0.09911877 0.6132153 0.05009418 0.37731420 2.513831444 0.08208750 0.04226667 0.1022333 5.996667e-02 0.89748285 0.04058971   FALSE
MSTRG.4061.16 ENSG00000228065 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA   4.255483 2.477388 5.863976 0.1327174 0.1725138 1.239706 0.2525187 0.34024444 0.3373282 0.18660750 0.09652899 -0.012062520 0.07339167 0.14610000 0.0567000 -8.940000e-02 0.85204716 0.04058971 FALSE FALSE
MSTRG.4061.9 ENSG00000228065 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA   4.255483 2.477388 5.863976 0.1327174 0.1725138 1.239706 0.7133657 0.61246807 0.6104319 0.14982759 0.05291384 -0.004726915 0.18712500 0.24250000 0.1040667 -1.384333e-01 0.04058971 0.04058971   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000228065 E001 0.0000000       10 65570338 65570445 108 +      
ENSG00000228065 E002 0.0000000       10 65570446 65570451 6 +      
ENSG00000228065 E003 0.1451727 0.0442741883 1.000000e+00   10 65570452 65570465 14 + 0.087 0.000 -9.626
ENSG00000228065 E004 0.1451727 0.0442741883 1.000000e+00   10 65570466 65570467 2 + 0.087 0.000 -11.937
ENSG00000228065 E005 0.1451727 0.0442741883 1.000000e+00   10 65570468 65570470 3 + 0.087 0.000 -11.937
ENSG00000228065 E006 0.1451727 0.0442741883 1.000000e+00   10 65570471 65570474 4 + 0.087 0.000 -11.937
ENSG00000228065 E007 0.7289840 0.5313499425 8.632036e-01 9.157980e-01 10 65570475 65570497 23 + 0.274 0.166 -0.916
ENSG00000228065 E008 1.0287926 0.2263083693 8.589178e-01 9.129742e-01 10 65570498 65570501 4 + 0.323 0.287 -0.240
ENSG00000228065 E009 1.3318234 0.0824459978 5.352642e-01 6.671496e-01 10 65570502 65570509 8 + 0.407 0.290 -0.710
ENSG00000228065 E010 1.3318234 0.0824459978 5.352642e-01 6.671496e-01 10 65570510 65570511 2 + 0.407 0.290 -0.710
ENSG00000228065 E011 1.3318234 0.0824459978 5.352642e-01 6.671496e-01 10 65570512 65570512 1 + 0.407 0.290 -0.710
ENSG00000228065 E012 1.3318234 0.0824459978 5.352642e-01 6.671496e-01 10 65570513 65570515 3 + 0.407 0.290 -0.710
ENSG00000228065 E013 1.3318234 0.0824459978 5.352642e-01 6.671496e-01 10 65570516 65570517 2 + 0.407 0.290 -0.710
ENSG00000228065 E014 1.4769961 0.1562603962 4.699944e-01 6.092096e-01 10 65570518 65570519 2 + 0.442 0.288 -0.912
ENSG00000228065 E015 1.4769961 0.1562603962 4.699944e-01 6.092096e-01 10 65570520 65570521 2 + 0.442 0.288 -0.912
ENSG00000228065 E016 1.7800270 0.1626236954 3.263344e-01 4.697874e-01 10 65570522 65570522 1 + 0.507 0.288 -1.237
ENSG00000228065 E017 1.7800270 0.1626236954 3.263344e-01 4.697874e-01 10 65570523 65570526 4 + 0.507 0.288 -1.237
ENSG00000228065 E018 3.6674458 0.0051868567 7.432547e-01 8.319457e-01 10 65570527 65570528 2 + 0.678 0.638 -0.171
ENSG00000228065 E019 4.1124271 0.0051564440 7.661132e-01 8.486948e-01 10 65570529 65570534 6 + 0.717 0.683 -0.139
ENSG00000228065 E020 4.5531420 0.0133882592 7.791703e-01 8.579942e-01 10 65570535 65570535 1 + 0.752 0.723 -0.118
ENSG00000228065 E021 4.5531420 0.0133882592 7.791703e-01 8.579942e-01 10 65570536 65570537 2 + 0.752 0.723 -0.118
ENSG00000228065 E022 5.0001996 0.0096200362 7.934638e-01 8.679447e-01 10 65570538 65570539 2 + 0.785 0.761 -0.096
ENSG00000228065 E023 5.6635056 0.0103641120 7.362828e-01 8.268102e-01 10 65570540 65570545 6 + 0.830 0.795 -0.135
ENSG00000228065 E024 6.4493974 0.0673963088 3.719215e-01 5.163942e-01 10 65570546 65570556 11 + 0.909 0.728 -0.710
ENSG00000228065 E025 14.7584241 0.0016018731 2.391018e-01 3.730584e-01 10 65570557 65570759 203 + 1.212 1.113 -0.353
ENSG00000228065 E026 0.3697384 0.0249206487 6.447366e-02 1.341719e-01 10 65570760 65570874 115 + 0.000 0.292 13.724
ENSG00000228065 E027 0.6727692 0.0401365217 4.686936e-01 6.080893e-01 10 65570875 65571424 550 + 0.159 0.292 1.111
ENSG00000228065 E028 15.0901927 0.0012137272 6.593467e-01 7.681741e-01 10 65571425 65571484 60 + 1.175 1.225 0.178
ENSG00000228065 E029 17.3359042 0.0010568668 2.890313e-01 4.297037e-01 10 65571485 65571567 83 + 1.277 1.199 -0.275
ENSG00000228065 E030 11.1444648 0.0044239603 1.200871e-01 2.201143e-01 10 65571568 65571579 12 + 1.120 0.960 -0.584
ENSG00000228065 E031 25.5083459 0.0049408256 3.108984e-01 4.533360e-01 10 65572935 65573056 122 + 1.381 1.470 0.310
ENSG00000228065 E032 0.1482932 0.0411597534 2.304141e-01   10 65573057 65573200 144 + 0.000 0.169 12.781
ENSG00000228065 E033 1.2857384 0.1926657251 7.994978e-01 8.720956e-01 10 65579883 65579948 66 + 0.324 0.388 0.382
ENSG00000228065 E034 1.1070527 0.0119402189 3.683684e-02 8.515819e-02 10 65581612 65581673 62 + 0.159 0.530 2.430
ENSG00000228065 E035 1.0349198 0.7588175891 5.783012e-01 7.034275e-01 10 65581674 65582473 800 + 0.221 0.440 1.402
ENSG00000228065 E036 23.4671474 0.0108244763 3.950124e-01 5.388619e-01 10 65585485 65585567 83 + 1.347 1.439 0.316
ENSG00000228065 E037 24.1411505 0.0009409311 5.670337e-01 6.939191e-01 10 65585568 65585664 97 + 1.369 1.421 0.180
ENSG00000228065 E038 31.3012557 0.0083884136 7.227828e-01 8.168247e-01 10 65585665 65585802 138 + 1.499 1.479 -0.067
ENSG00000228065 E039 4.4806023 0.1354004924 8.938189e-01 9.360958e-01 10 65585803 65586279 477 + 0.733 0.691 -0.176
ENSG00000228065 E040 18.9885001 0.0256795391 3.630524e-01 5.074793e-01 10 65615636 65615725 90 + 1.317 1.213 -0.365
ENSG00000228065 E041 9.8800675 0.0154072946 1.657348e-01 2.826531e-01 10 65615726 65615732 7 + 1.074 0.912 -0.600
ENSG00000228065 E042 9.3724296 0.0715949531 3.038582e-01 4.458465e-01 10 65615733 65615733 1 + 1.058 0.882 -0.655
ENSG00000228065 E043 8.7791671 0.0504458809 3.554322e-01 4.997667e-01 10 65615734 65615736 3 + 1.023 0.883 -0.523
ENSG00000228065 E044 10.1400190 0.0428993375 7.328391e-01 8.242254e-01 10 65615737 65615761 25 + 1.049 1.002 -0.175
ENSG00000228065 E045 1.6972965 0.0200825346 3.104242e-01 4.528258e-01 10 65615762 65615989 228 + 0.476 0.292 -1.058
ENSG00000228065 E046 0.1515154 0.0427762186 1.000000e+00   10 65615990 65616189 200 + 0.087 0.000 -11.939
ENSG00000228065 E047 2.3948267 0.1841784524 6.393545e-02 1.332480e-01 10 65628013 65628903 891 + 0.323 0.728 1.974
ENSG00000228065 E048 0.2944980 0.4989786158 6.565550e-01   10 65632080 65632828 749 + 0.159 0.000 -12.534
ENSG00000228065 E049 0.9158732 0.3618475693 5.877302e-01 7.109935e-01 10 65637870 65638050 181 + 0.323 0.170 -1.201
ENSG00000228065 E050 0.5891098 0.0184972304 1.685561e-01 2.862818e-01 10 65638051 65638413 363 + 0.275 0.000 -13.646
ENSG00000228065 E051 0.5997190 0.0851260834 1.926288e-01 3.170598e-01 10 65641604 65642134 531 + 0.276 0.000 -13.616
ENSG00000228065 E052 2.1025239 0.0070770079 3.708688e-01 5.152838e-01 10 65659795 65660839 1045 + 0.536 0.386 -0.764
ENSG00000228065 E053 2.8902649 0.0058172557 2.707195e-02 6.613666e-02 10 65670085 65670688 604 + 0.678 0.292 -1.976
ENSG00000228065 E054 8.6819027 0.0020524180 3.257839e-01 4.692230e-01 10 65670689 65670871 183 + 1.013 0.912 -0.375
ENSG00000228065 E055 27.1487910 0.0008663360 6.891323e-01 7.910640e-01 10 65670872 65672311 1440 + 1.426 1.465 0.134
ENSG00000228065 E056 7.5284847 0.0024150467 3.479168e-01 4.921362e-01 10 65672312 65672549 238 + 0.883 1.003 0.450
ENSG00000228065 E057 0.8942170 0.0131718414 6.410595e-02 1.335328e-01 10 65679352 65679408 57 + 0.367 0.000 -14.097
ENSG00000228065 E058 0.2966881 0.0274424043 5.140688e-01   10 65679409 65679412 4 + 0.159 0.000 -12.824
ENSG00000228065 E059 10.5611045 0.0016763223 1.929716e-01 3.175110e-01 10 65680960 65682189 1230 + 1.090 0.960 -0.474
ENSG00000228065 E060 7.3564049 0.0025707842 5.046933e-01 6.405910e-01 10 65682190 65683232 1043 + 0.870 0.961 0.341
ENSG00000228065 E061 0.5911862 0.0175955752 1.678054e-01 2.853394e-01 10 65689503 65689507 5 + 0.275 0.000 -13.647
ENSG00000228065 E062 0.9244060 0.0126427167 3.980498e-01 5.417882e-01 10 65689508 65689611 104 + 0.324 0.170 -1.211
ENSG00000228065 E063 0.0000000       10 65689612 65689726 115 +      
ENSG00000228065 E064 0.7480121 0.0399899928 5.640447e-01 6.914314e-01 10 65691701 65692187 487 + 0.276 0.169 -0.893
ENSG00000228065 E065 0.0000000       10 65698089 65698102 14 +      
ENSG00000228065 E066 1.7110130 0.0093545294 7.201475e-01 8.148023e-01 10 65698103 65698726 624 + 0.443 0.386 -0.305
ENSG00000228065 E067 0.2966881 0.0274424043 5.140688e-01   10 65715658 65716559 902 + 0.159 0.000 -12.824
ENSG00000228065 E068 0.6696487 0.0207959908 7.813652e-01 8.595497e-01 10 65736897 65736962 66 + 0.221 0.170 -0.472
ENSG00000228065 E069 0.8168978 0.0153787590 5.583709e-01 6.866222e-01 10 65736963 65736999 37 + 0.275 0.170 -0.887
ENSG00000228065 E070 0.0000000       10 65750828 65751248 421 +      
ENSG00000228065 E071 0.0000000       10 65765351 65765399 49 +      
ENSG00000228065 E072 0.1472490 0.0473963483 1.000000e+00   10 65766478 65766541 64 + 0.087 0.000 -11.936
ENSG00000228065 E073 0.6696487 0.0207959908 7.813652e-01 8.595497e-01 10 65766556 65766623 68 + 0.221 0.170 -0.472
ENSG00000228065 E074 4.4767506 0.0066080512 5.962486e-02 1.259857e-01 10 65768393 65768462 70 + 0.613 0.886 1.109
ENSG00000228065 E075 0.1451727 0.0442741883 1.000000e+00   10 65768463 65768835 373 + 0.087 0.000 -11.937
ENSG00000228065 E076 42.8818368 0.0238054876 3.499221e-06 2.581553e-05 10 65779542 65781072 1531 + 1.448 1.826 1.287
ENSG00000228065 E077 0.0000000       10 65828434 65828538 105 +      
ENSG00000228065 E078 0.0000000       10 65852506 65852609 104 +      
ENSG00000228065 E079 0.2903454 0.3245182155 6.142161e-01   10 65877157 65877498 342 + 0.159 0.000 -12.636
ENSG00000228065 E080 1.4811488 0.0091811561 3.880387e-01 5.321537e-01 10 65878643 65880289 1647 + 0.443 0.291 -0.890