ENSG00000227372

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000423764 ENSG00000227372 HEK293_OSMI2_2hA HEK293_TMG_2hB TP73-AS1 transcribed_unitary_pseudogene processed_transcript 24.0652 31.09493 19.35517 0.2213913 0.5425565 -0.6836795 1.218298 3.438999 0.6919332 0.6015537 0.69193317 -2.29677228 0.04847917 0.11063333 0.0375000 -0.07313333 0.1571548051 0.0001982734 TRUE TRUE
ENST00000452079 ENSG00000227372 HEK293_OSMI2_2hA HEK293_TMG_2hB TP73-AS1 transcribed_unitary_pseudogene processed_transcript 24.0652 31.09493 19.35517 0.2213913 0.5425565 -0.6836795 4.657248 4.377316 4.4118142 0.2953100 0.03927017 0.01129994 0.20107500 0.14076667 0.2284000 0.08763333 0.0009591467 0.0001982734 TRUE TRUE
ENST00000624167 ENSG00000227372 HEK293_OSMI2_2hA HEK293_TMG_2hB TP73-AS1 transcribed_unitary_pseudogene processed_transcript 24.0652 31.09493 19.35517 0.2213913 0.5425565 -0.6836795 1.586535 3.407120 0.8374512 0.3972592 0.52916265 -2.01157892 0.05812500 0.10946667 0.0418000 -0.06766667 0.4487167597 0.0001982734   FALSE
ENST00000647817 ENSG00000227372 HEK293_OSMI2_2hA HEK293_TMG_2hB TP73-AS1 transcribed_unitary_pseudogene processed_transcript 24.0652 31.09493 19.35517 0.2213913 0.5425565 -0.6836795 2.006722 2.216403 2.0661435 0.3416101 0.23357911 -0.10080831 0.08409167 0.07113333 0.1067000 0.03556667 0.2639824247 0.0001982734 TRUE TRUE
ENST00000648270 ENSG00000227372 HEK293_OSMI2_2hA HEK293_TMG_2hB TP73-AS1 transcribed_unitary_pseudogene processed_transcript 24.0652 31.09493 19.35517 0.2213913 0.5425565 -0.6836795 2.558023 4.563462 1.8787810 1.0433477 0.94515067 -1.27583122 0.10516667 0.14656667 0.0951000 -0.05146667 0.7697749223 0.0001982734 TRUE FALSE
ENST00000648600 ENSG00000227372 HEK293_OSMI2_2hA HEK293_TMG_2hB TP73-AS1 transcribed_unitary_pseudogene processed_transcript 24.0652 31.09493 19.35517 0.2213913 0.5425565 -0.6836795 3.998096 5.295785 3.9663690 0.7840519 0.61062921 -0.41611461 0.16626667 0.17030000 0.2036667 0.03336667 0.7462694756 0.0001982734 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000227372 E001 0.6997360 0.0166882306 9.985543e-02 1.902576e-01 1 3735511 3735542 32 - 0.000 0.305 10.385
ENSG00000227372 E002 0.0000000       1 3735601 3735610 10 -      
ENSG00000227372 E003 0.3634088 0.4185126005 4.761392e-01   1 3735611 3735624 14 - 0.000 0.180 10.889
ENSG00000227372 E004 0.7331471 0.0172671820 9.953821e-02 1.897754e-01 1 3735625 3735649 25 - 0.000 0.305 13.129
ENSG00000227372 E005 9.3632464 0.0289498804 1.745624e-02 4.594696e-02 1 3735650 3735685 36 - 0.746 1.084 1.285
ENSG00000227372 E006 16.2053092 0.0437452776 7.118206e-02 1.452993e-01 1 3735686 3735763 78 - 1.040 1.280 0.857
ENSG00000227372 E007 49.8681598 0.0214932445 5.283896e-02 1.141998e-01 1 3735764 3735983 220 - 1.555 1.734 0.607
ENSG00000227372 E008 47.2574168 0.0023020415 2.096035e-02 5.350718e-02 1 3735984 3736056 73 - 1.565 1.696 0.445
ENSG00000227372 E009 60.5566665 0.0056087456 7.212287e-02 1.468684e-01 1 3736057 3736174 118 - 1.689 1.794 0.355
ENSG00000227372 E010 31.2804374 0.0072818876 4.436911e-01 5.852757e-01 1 3736175 3736192 18 - 1.448 1.502 0.189
ENSG00000227372 E011 73.8063146 0.0043289077 1.217424e-02 3.394819e-02 1 3736193 3736407 215 - 1.760 1.892 0.443
ENSG00000227372 E012 28.2140663 0.0034217369 8.439497e-01 9.028388e-01 1 3736408 3736448 41 - 1.441 1.450 0.032
ENSG00000227372 E013 28.3969271 0.0016425538 4.984045e-01 6.348671e-01 1 3736449 3736481 33 - 1.421 1.462 0.143
ENSG00000227372 E014 22.9545095 0.0014010626 2.644371e-01 4.024099e-01 1 3736482 3736482 1 - 1.304 1.383 0.277
ENSG00000227372 E015 45.7028475 0.0024415903 4.330318e-02 9.711691e-02 1 3736483 3736533 51 - 1.565 1.680 0.390
ENSG00000227372 E016 39.8446719 0.0005928242 4.481949e-02 9.987308e-02 1 3736534 3736558 25 - 1.508 1.621 0.386
ENSG00000227372 E017 44.1036933 0.0005959687 2.052461e-02 5.259612e-02 1 3736559 3736758 200 - 1.540 1.666 0.429
ENSG00000227372 E018 27.9127434 0.0129658680 1.575330e-02 4.218076e-02 1 3736759 3736925 167 - 1.276 1.495 0.758
ENSG00000227372 E019 56.4506666 0.0004451867 3.770208e-02 8.677195e-02 1 3736926 3737103 178 - 1.666 1.764 0.333
ENSG00000227372 E020 23.5957122 0.0007932144 2.076814e-01 3.356963e-01 1 3737104 3737142 39 - 1.304 1.393 0.309
ENSG00000227372 E021 17.6059187 0.0011188098 1.693725e-01 2.873721e-01 1 3737143 3737148 6 - 1.168 1.281 0.399
ENSG00000227372 E022 23.4141044 0.0009478054 3.242837e-02 7.668417e-02 1 3737149 3737165 17 - 1.246 1.406 0.557
ENSG00000227372 E023 28.0845870 0.0011392818 1.551999e-02 4.167209e-02 1 3737166 3737192 27 - 1.321 1.489 0.579
ENSG00000227372 E024 27.2693568 0.0252913405 1.449443e-01 2.547595e-01 1 3737193 3737205 13 - 1.330 1.472 0.491
ENSG00000227372 E025 26.3834873 0.0299239242 1.512180e-01 2.633360e-01 1 3737206 3737211 6 - 1.313 1.462 0.516
ENSG00000227372 E026 117.5099451 0.0003166788 1.765396e-09 2.499058e-08 1 3737212 3737337 126 - 1.896 2.109 0.715
ENSG00000227372 E027 245.1886806 0.0007989636 1.133715e-06 9.304234e-06 1 3737338 3737528 191 - 2.275 2.403 0.427
ENSG00000227372 E028 110.1124567 0.0003872597 2.794592e-04 1.296203e-03 1 3737529 3737538 10 - 1.931 2.059 0.429
ENSG00000227372 E029 149.1139149 0.0002291887 1.421013e-04 7.125641e-04 1 3737539 3737593 55 - 2.071 2.184 0.378
ENSG00000227372 E030 234.2474095 0.0002106541 6.865078e-07 5.905769e-06 1 3737594 3737780 187 - 2.262 2.381 0.397
ENSG00000227372 E031 138.2427139 0.0002436187 2.765765e-07 2.578065e-06 1 3737781 3737854 74 - 2.002 2.165 0.548
ENSG00000227372 E032 217.2854909 0.0008338424 7.104199e-05 3.851944e-04 1 3737855 3738074 220 - 2.236 2.345 0.362
ENSG00000227372 E033 213.6616022 0.0002453626 4.239353e-04 1.866145e-03 1 3738075 3738222 148 - 2.245 2.331 0.289
ENSG00000227372 E034 265.1285535 0.0001893661 8.876976e-02 1.732353e-01 1 3738223 3738433 211 - 2.376 2.409 0.112
ENSG00000227372 E035 88.5868884 0.0020367014 4.122632e-01 5.558309e-01 1 3738434 3738446 13 - 1.956 1.916 -0.136
ENSG00000227372 E036 121.7445980 0.0003122861 8.582192e-01 9.125132e-01 1 3738447 3738513 67 - 2.073 2.061 -0.039
ENSG00000227372 E037 154.3101759 0.0002454969 2.244304e-01 3.557249e-01 1 3738514 3739058 545 - 2.192 2.150 -0.140
ENSG00000227372 E038 59.1034107 0.0012303407 5.546493e-01 6.836031e-01 1 3739059 3739216 158 - 1.775 1.741 -0.117
ENSG00000227372 E039 24.7560719 0.0011109756 6.525091e-02 1.354531e-01 1 3739217 3739227 11 - 1.466 1.330 -0.471
ENSG00000227372 E040 29.2514391 0.0007625017 3.833235e-01 5.275163e-01 1 3739228 3739299 72 - 1.490 1.427 -0.218
ENSG00000227372 E041 12.6095927 0.0249808232 8.164498e-01 8.838664e-01 1 3739300 3739335 36 - 1.087 1.115 0.102
ENSG00000227372 E042 3.3287119 0.1684377016 1.111612e-01 2.072527e-01 1 3739336 3739371 36 - 0.806 0.504 -1.300
ENSG00000227372 E043 4.8715891 0.0032766819 9.528980e-07 7.938945e-06 1 3739372 3739407 36 - 1.072 0.403 -2.823
ENSG00000227372 E044 6.7806564 0.0024315310 1.804771e-01 3.017834e-01 1 3739408 3739457 50 - 0.969 0.803 -0.636
ENSG00000227372 E045 16.1983886 0.0219357462 3.772236e-02 8.681124e-02 1 3739458 3739515 58 - 1.346 1.116 -0.812
ENSG00000227372 E046 17.3071135 0.0801639712 1.807827e-01 3.021797e-01 1 3739516 3739551 36 - 1.376 1.141 -0.825
ENSG00000227372 E047 19.9359331 0.0358504433 8.144183e-02 1.618100e-01 1 3739552 3739587 36 - 1.407 1.211 -0.684
ENSG00000227372 E048 21.7205899 0.0323575600 3.426646e-02 8.027074e-02 1 3739588 3739623 36 - 1.466 1.230 -0.822
ENSG00000227372 E049 24.7510878 0.0007865661 3.618381e-06 2.660243e-05 1 3739624 3739659 36 - 1.570 1.245 -1.127
ENSG00000227372 E050 19.3132385 0.0023896196 4.457115e-08 4.855677e-07 1 3739660 3739695 36 - 1.519 1.078 -1.546
ENSG00000227372 E051 18.0207566 0.0009966652 9.759040e-07 8.113490e-06 1 3739696 3739704 9 - 1.473 1.078 -1.389
ENSG00000227372 E052 38.7336200 0.0005552160 4.560200e-12 1.003038e-10 1 3739705 3739799 95 - 1.790 1.397 -1.342
ENSG00000227372 E053 27.9232616 0.0341436271 5.695411e-02 1.213822e-01 1 3739800 3739835 36 - 1.555 1.349 -0.710
ENSG00000227372 E054 25.0487585 0.0816936125 3.466728e-03 1.162965e-02 1 3739836 3739847 12 - 1.616 1.199 -1.445
ENSG00000227372 E055 26.1086265 0.0099832964 2.564239e-08 2.926960e-07 1 3739848 3739907 60 - 1.654 1.192 -1.598
ENSG00000227372 E056 20.5410646 0.0117938896 4.816409e-06 3.443094e-05 1 3739908 3739943 36 - 1.535 1.115 -1.468
ENSG00000227372 E057 20.6397881 0.0038026138 1.187777e-07 1.190209e-06 1 3739944 3739979 36 - 1.540 1.114 -1.489
ENSG00000227372 E058 23.0836935 0.0008271413 7.779794e-05 4.176707e-04 1 3739980 3739988 9 - 1.529 1.244 -0.989
ENSG00000227372 E059 34.5777502 0.0009898486 4.756762e-07 4.225019e-06 1 3739989 3740039 51 - 1.707 1.401 -1.044
ENSG00000227372 E060 37.4504579 0.0007883100 3.165744e-04 1.447041e-03 1 3740040 3740111 72 - 1.685 1.471 -0.731
ENSG00000227372 E061 24.9699661 0.0021656208 7.374512e-05 3.981190e-04 1 3740112 3740123 12 - 1.560 1.275 -0.988
ENSG00000227372 E062 27.4864038 0.0007095443 6.863564e-04 2.849558e-03 1 3740124 3740136 13 - 1.565 1.335 -0.793
ENSG00000227372 E063 29.1448862 0.0006729436 2.455181e-03 8.629437e-03 1 3740137 3740159 23 - 1.575 1.374 -0.690
ENSG00000227372 E064 44.2550923 0.0005726579 1.814276e-06 1.424878e-05 1 3740160 3740232 73 - 1.781 1.523 -0.877
ENSG00000227372 E065 125.2981204 0.0002929562 5.418759e-01 6.727665e-01 1 3740233 3740274 42 - 2.089 2.063 -0.087
ENSG00000227372 E066 180.2029519 0.0001938252 5.314396e-01 6.638904e-01 1 3740275 3740387 113 - 2.247 2.224 -0.077
ENSG00000227372 E067 7.6636124 0.0177551988 2.449055e-02 6.083286e-02 1 3740388 3741219 832 - 1.087 0.801 -1.076
ENSG00000227372 E068 2.9225396 0.0051160111 1.447099e-01 2.544420e-01 1 3741220 3741373 154 - 0.712 0.483 -1.029
ENSG00000227372 E069 10.7011462 0.0314659012 5.871127e-02 1.244230e-01 1 3741374 3742429 1056 - 1.192 0.948 -0.889
ENSG00000227372 E070 13.5044876 0.0168145704 3.550471e-01 4.993933e-01 1 3742430 3742517 88 - 1.072 1.174 0.366
ENSG00000227372 E071 2.7280465 0.0076229682 9.475643e-01 9.710222e-01 1 3742518 3742803 286 - 0.543 0.550 0.031
ENSG00000227372 E072 177.4588811 0.0020651670 9.444865e-01 9.691911e-01 1 3742804 3742911 108 - 2.227 2.224 -0.009
ENSG00000227372 E073 71.9195479 0.0005532903 7.239685e-01 8.176416e-01 1 3742912 3742957 46 - 1.829 1.839 0.033
ENSG00000227372 E074 30.5397089 0.0006692161 7.842004e-02 1.569503e-01 1 3742958 3742960 3 - 1.545 1.427 -0.406
ENSG00000227372 E075 7.0920046 0.0024228238 2.810636e-01 4.209291e-01 1 3742961 3742983 23 - 0.969 0.836 -0.505
ENSG00000227372 E076 183.3434290 0.0002312789 2.993933e-01 4.409020e-01 1 3743061 3743190 130 - 2.225 2.247 0.077
ENSG00000227372 E077 2.5818562 0.0071761530 9.508162e-01 9.732194e-01 1 3743191 3743261 71 - 0.543 0.549 0.028
ENSG00000227372 E078 1.3639869 0.0390757725 7.056541e-01 8.039792e-01 1 3743280 3743300 21 - 0.425 0.355 -0.396
ENSG00000227372 E079 1.8445444 0.0091003935 5.084757e-02 1.106851e-01 1 3743301 3743371 71 - 0.636 0.305 -1.708
ENSG00000227372 E080 8.3659682 0.0023079176 1.906141e-01 3.145280e-01 1 3745381 3745606 226 - 0.834 0.985 0.574
ENSG00000227372 E081 446.0137875 0.0001176066 6.507864e-02 1.351607e-01 1 3745607 3746181 575 - 2.648 2.610 -0.125
ENSG00000227372 E082 78.9944389 0.0008183772 1.266432e-01 2.294670e-01 1 3746182 3746186 5 - 1.921 1.850 -0.237
ENSG00000227372 E083 127.2551179 0.0039004023 2.193257e-01 3.495583e-01 1 3746187 3746286 100 - 2.119 2.060 -0.199
ENSG00000227372 E084 147.0497635 0.0015315607 5.066925e-02 1.103476e-01 1 3746287 3746436 150 - 2.189 2.115 -0.245
ENSG00000227372 E085 121.3738605 0.0057294240 1.484075e-01 2.595104e-01 1 3746437 3746527 91 - 2.109 2.034 -0.252
ENSG00000227372 E086 280.5951553 0.0033189987 3.394007e-03 1.142068e-02 1 3746528 3747373 846 - 2.488 2.385 -0.346