ENSG00000226688

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000665049 ENSG00000226688 HEK293_OSMI2_2hA HEK293_TMG_2hB ENTPD1-AS1 lncRNA lncRNA 18.96159 11.45639 25.62691 0.8918699 0.8390978 1.160811 1.009844 0.2366686 1.819282 0.1192816 0.2900429 2.8906315 0.0459375 0.0199000 0.07186667 0.05196667 0.1497669659 0.0004786184 FALSE TRUE
ENST00000669283 ENSG00000226688 HEK293_OSMI2_2hA HEK293_TMG_2hB ENTPD1-AS1 lncRNA lncRNA 18.96159 11.45639 25.62691 0.8918699 0.8390978 1.160811 7.506164 5.8813527 8.647655 0.7153772 0.1931936 0.5553774 0.4141750 0.5101333 0.33860000 -0.17153333 0.0004786184 0.0004786184 FALSE TRUE
ENST00000671323 ENSG00000226688 HEK293_OSMI2_2hA HEK293_TMG_2hB ENTPD1-AS1 lncRNA lncRNA 18.96159 11.45639 25.62691 0.8918699 0.8390978 1.160811 2.344476 0.6104894 4.207362 0.1850612 0.3507374 2.7648624 0.1152583 0.0561000 0.16376667 0.10766667 0.0416642642 0.0004786184 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000226688 E001 1.7565405 0.0591989021 5.615207e-02 1.199711e-01 10 95732976 95733750 775 - 0.283 0.624 1.804
ENSG00000226688 E002 1.6242306 0.0085866141 8.809836e-01 9.277050e-01 10 95753206 95755361 2156 - 0.416 0.377 -0.217
ENSG00000226688 E003 0.5901394 0.4626061824 3.374599e-01 4.813560e-01 10 95755362 95755864 503 - 0.090 0.295 2.082
ENSG00000226688 E004 0.5149111 0.0204478634 2.271326e-01 3.589765e-01 10 95755865 95756616 752 - 0.090 0.284 2.005
ENSG00000226688 E005 0.2934659 0.0287236584 5.879424e-01   10 95756617 95756714 98 - 0.090 0.164 1.003
ENSG00000226688 E006 0.1451727 0.0435046779 1.000000e+00   10 95756715 95756719 5 - 0.090 0.000 -11.843
ENSG00000226688 E007 0.4396707 0.0320240663 2.805699e-01 4.204162e-01 10 95784944 95785025 82 - 0.228 0.000 -13.482
ENSG00000226688 E008 0.2924217 0.0273719126 5.000421e-01   10 95785026 95785245 220 - 0.164 0.000 -12.958
ENSG00000226688 E009 0.2998086 0.0286754949 5.883033e-01   10 95824094 95824694 601 - 0.090 0.164 1.002
ENSG00000226688 E010 1.3630420 0.0100947360 8.351420e-02 1.650499e-01 10 95847302 95847391 90 - 0.228 0.519 1.742
ENSG00000226688 E011 2.5421895 0.0080796090 3.058375e-02 7.311254e-02 10 95847392 95847485 94 - 0.376 0.712 1.591
ENSG00000226688 E012 8.1337958 0.0741748236 3.551733e-02 8.264837e-02 10 95847486 95848785 1300 - 0.799 1.106 1.149
ENSG00000226688 E013 24.8152927 0.0024064141 3.287366e-03 1.111296e-02 10 95860148 95861312 1165 - 1.322 1.515 0.668
ENSG00000226688 E014 7.0870232 0.0174633074 7.230493e-02 1.471759e-01 10 95861313 95861526 214 - 0.798 1.010 0.807
ENSG00000226688 E015 7.1317625 0.0023362888 1.703717e-01 2.886539e-01 10 95861527 95861669 143 - 0.843 0.989 0.551
ENSG00000226688 E016 45.5710452 0.0423436586 2.992398e-03 1.024211e-02 10 95871507 95871816 310 - 1.760 1.386 -1.278
ENSG00000226688 E017 45.6589180 0.0372613215 8.449248e-06 5.708169e-05 10 95871817 95872113 297 - 1.790 1.249 -1.857
ENSG00000226688 E018 96.2885018 0.0329334718 1.480719e-06 1.185671e-05 10 95872114 95873017 904 - 2.103 1.597 -1.706
ENSG00000226688 E019 5.1093683 0.0419515711 1.004310e-01 1.911273e-01 10 95873018 95873023 6 - 0.870 0.574 -1.223
ENSG00000226688 E020 6.2561379 0.0634814133 1.056215e-01 1.990451e-01 10 95873024 95873045 22 - 0.944 0.626 -1.273
ENSG00000226688 E021 5.0393102 0.0935362087 2.107002e-01 3.393743e-01 10 95873046 95873070 25 - 0.856 0.575 -1.163
ENSG00000226688 E022 5.3317319 0.1042559423 1.823537e-01 3.041695e-01 10 95873071 95873084 14 - 0.883 0.575 -1.266
ENSG00000226688 E023 6.1745642 0.0804326776 5.267118e-01 6.599076e-01 10 95873085 95873087 3 - 0.896 0.748 -0.580
ENSG00000226688 E024 47.9434493 0.0101202481 1.229834e-02 3.424988e-02 10 95873088 95873166 79 - 1.615 1.773 0.539
ENSG00000226688 E025 72.7975854 0.0005971433 7.233020e-06 4.962783e-05 10 95873167 95873258 92 - 1.790 1.960 0.573
ENSG00000226688 E026 246.1791104 0.0005620673 1.292039e-04 6.553347e-04 10 95873259 95873760 502 - 2.355 2.429 0.246
ENSG00000226688 E027 61.9160917 0.0050989378 4.475746e-01 5.889496e-01 10 95873761 95873777 17 - 1.780 1.805 0.084
ENSG00000226688 E028 129.4887150 0.0016151414 1.140705e-02 3.213411e-02 10 95873778 95873944 167 - 2.077 2.148 0.240
ENSG00000226688 E029 108.1744998 0.0003533901 1.730230e-02 4.560767e-02 10 95873945 95874027 83 - 2.003 2.067 0.214
ENSG00000226688 E030 401.3802931 0.0001763087 2.928433e-03 1.005369e-02 10 95874028 95875133 1106 - 2.581 2.614 0.108
ENSG00000226688 E031 39.0315908 0.0007862878 5.104713e-01 6.456663e-01 10 95875134 95875174 41 - 1.585 1.604 0.065
ENSG00000226688 E032 70.7813561 0.0003454039 9.948609e-01 1.000000e+00 10 95875175 95875268 94 - 1.853 1.834 -0.063
ENSG00000226688 E033 48.5601678 0.0004970787 8.949604e-01 9.368758e-01 10 95875269 95875281 13 - 1.694 1.669 -0.088
ENSG00000226688 E034 73.8252389 0.0032208679 9.734733e-01 9.874262e-01 10 95875282 95875336 55 - 1.871 1.848 -0.078
ENSG00000226688 E035 81.4633924 0.0022404272 7.104975e-01 8.076614e-01 10 95875337 95875387 51 - 1.906 1.902 -0.015
ENSG00000226688 E036 62.2820960 0.0067812434 8.201797e-01 8.865476e-01 10 95875388 95875408 21 - 1.794 1.786 -0.027
ENSG00000226688 E037 170.2741692 0.0010082461 6.031287e-02 1.271416e-01 10 95875409 95875666 258 - 2.249 2.168 -0.270
ENSG00000226688 E038 59.2125137 0.0122287283 1.158179e-02 3.254140e-02 10 95875667 95876517 851 - 1.833 1.620 -0.722
ENSG00000226688 E039 99.1572710 0.0013270429 2.253882e-02 5.680112e-02 10 95876518 95876660 143 - 2.027 1.914 -0.380
ENSG00000226688 E040 0.2998086 0.0286754949 5.883033e-01   10 95876661 95876661 1 - 0.090 0.164 1.002
ENSG00000226688 E041 1.2856366 0.0113689526 8.486990e-02 1.671954e-01 10 95878225 95878263 39 - 0.228 0.519 1.740
ENSG00000226688 E042 0.5891098 0.0183137340 1.645059e-01 2.810395e-01 10 95878264 95878826 563 - 0.283 0.000 -14.014
ENSG00000226688 E043 1.9197728 0.0073721700 9.382335e-01 9.651987e-01 10 95894448 95894487 40 - 0.453 0.454 0.005
ENSG00000226688 E044 9.8316870 0.0145476753 4.776204e-01 6.161519e-01 10 95897528 95897557 30 - 0.998 1.064 0.240
ENSG00000226688 E045 23.7589520 0.0106326896 4.493680e-01 5.905629e-01 10 95897558 95897679 122 - 1.363 1.405 0.146
ENSG00000226688 E046 32.1224965 0.0295465490 5.704178e-01 6.969125e-01 10 95898887 95899018 132 - 1.500 1.520 0.070
ENSG00000226688 E047 0.8878743 0.0131261779 6.260225e-02 1.310302e-01 10 95904656 95904829 174 - 0.376 0.000 -14.623
ENSG00000226688 E048 87.9094899 0.0003106907 5.271219e-02 1.139778e-01 10 95904830 95904935 106 - 1.972 1.876 -0.323
ENSG00000226688 E049 36.4910237 0.0006259534 8.667405e-01 9.182393e-01 10 95904936 95904938 3 - 1.574 1.545 -0.099
ENSG00000226688 E050 73.2282813 0.0003636739 6.409577e-02 1.335175e-01 10 95907663 95907777 115 - 1.894 1.794 -0.337
ENSG00000226688 E051 65.5478279 0.0004407358 6.267297e-02 1.311478e-01 10 95907778 95908178 401 - 1.846 1.740 -0.358
ENSG00000226688 E052 0.8836079 0.0135423312 6.264937e-02 1.311013e-01 10 95908601 95909131 531 - 0.376 0.000 -14.618
ENSG00000226688 E053 0.4396707 0.0320240663 2.805699e-01 4.204162e-01 10 95918938 95921485 2548 - 0.228 0.000 -13.482
ENSG00000226688 E054 2.1432969 0.0083705092 1.271496e-01 2.301657e-01 10 95921486 95921597 112 - 0.575 0.284 -1.580
ENSG00000226688 E055 0.1482932 0.0407328368 2.323245e-01   10 95938106 95939962 1857 - 0.000 0.164 12.220
ENSG00000226688 E056 0.0000000       10 95939963 95940131 169 -      
ENSG00000226688 E057 0.0000000       10 95941222 95941292 71 -      
ENSG00000226688 E058 0.0000000       10 95950458 95950528 71 -      
ENSG00000226688 E059 0.1515154 0.0433599273 1.000000e+00   10 95981466 95981593 128 - 0.090 0.000 -11.844
ENSG00000226688 E060 1.5239214 0.0964667697 3.532059e-01 4.974374e-01 10 95996105 95996281 177 - 0.333 0.514 0.975
ENSG00000226688 E061 7.1536371 0.0935101562 9.860810e-01 9.953065e-01 10 96018720 96021275 2556 - 0.909 0.910 0.005
ENSG00000226688 E062 1.2555363 0.0100700063 6.568852e-01 7.663431e-01 10 96021276 96021277 2 - 0.376 0.284 -0.580
ENSG00000226688 E063 3.8458011 0.0116466136 7.247774e-01 8.182252e-01 10 96021278 96021568 291 - 0.670 0.711 0.170
ENSG00000226688 E064 0.2987644 0.0274039511 4.995959e-01   10 96022544 96022714 171 - 0.164 0.000 -12.958
ENSG00000226688 E065 1.4811488 0.0086278103 3.889094e-01 5.329850e-01 10 96027207 96027345 139 - 0.453 0.284 -0.997
ENSG00000226688 E066 3.7839207 0.0044268773 5.208096e-02 1.128610e-01 10 96042478 96042784 307 - 0.547 0.815 1.131
ENSG00000226688 E067 5.3442589 0.0030981611 1.052897e-03 4.142470e-03 10 96042785 96042927 143 - 0.601 1.009 1.625
ENSG00000226688 E068 0.0000000       10 96044875 96044913 39 -      
ENSG00000226688 E069 1.7423453 0.0530978043 9.094436e-02 1.766348e-01 10 96058944 96059907 964 - 0.283 0.578 1.596
ENSG00000226688 E070 0.6642364 0.0846138409 4.827290e-01 6.208482e-01 10 96087551 96087757 207 - 0.164 0.284 1.007
ENSG00000226688 E071 1.4015377 0.1676241495 2.829426e-01 4.230139e-01 10 96088009 96088908 900 - 0.283 0.513 1.298
ENSG00000226688 E072 0.5180316 0.0210139052 1.840620e-02 4.802369e-02 10 96088909 96089230 322 - 0.000 0.377 13.942
ENSG00000226688 E073 0.1482932 0.0407328368 2.323245e-01   10 96089231 96089265 35 - 0.000 0.164 12.220
ENSG00000226688 E074 12.1191604 0.0015795961 9.517672e-02 1.831408e-01 10 96089266 96089307 42 - 1.055 1.197 0.512
ENSG00000226688 E075 0.2965864 0.0800232453 7.440648e-02   10 96089308 96089442 135 - 0.000 0.282 12.972
ENSG00000226688 E076 0.1482932 0.0407328368 2.323245e-01   10 96089443 96089538 96 - 0.000 0.164 12.220
ENSG00000226688 E077 1.6553619 0.0088284788 1.626050e-02 4.329895e-02 10 96089539 96089981 443 - 0.228 0.626 2.226
ENSG00000226688 E078 18.8601592 0.0010171103 5.808216e-01 7.055148e-01 10 96089982 96090250 269 - 1.282 1.309 0.092