ENSG00000213923

Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000359867 ENSG00000213923 HEK293_OSMI2_2hA HEK293_TMG_2hB CSNK1E protein_coding protein_coding 328.0875 453.1586 263.6576 22.43234 6.85604 -0.7813275 48.35168 137.09580 1.285783 20.801970 1.2857827 -6.72532195 0.13740417 0.3055333 0.00500000 -0.30053333 4.169150e-03 9.805874e-10 FALSE TRUE
ENST00000396832 ENSG00000213923 HEK293_OSMI2_2hA HEK293_TMG_2hB CSNK1E protein_coding protein_coding 328.0875 453.1586 263.6576 22.43234 6.85604 -0.7813275 113.47002 100.13506 129.894695 25.443233 3.5929409 0.37536238 0.35212083 0.2184667 0.49286667 0.27440000 6.487883e-03 9.805874e-10 FALSE TRUE
ENST00000413574 ENSG00000213923 HEK293_OSMI2_2hA HEK293_TMG_2hB CSNK1E protein_coding protein_coding 328.0875 453.1586 263.6576 22.43234 6.85604 -0.7813275 26.65143 48.06804 18.011901 1.870171 0.6201578 -1.41562682 0.07656250 0.1062000 0.06836667 -0.03783333 9.805874e-10 9.805874e-10 FALSE TRUE
ENST00000494610 ENSG00000213923 HEK293_OSMI2_2hA HEK293_TMG_2hB CSNK1E protein_coding retained_intron 328.0875 453.1586 263.6576 22.43234 6.85604 -0.7813275 19.02173 16.59832 17.373224 2.976091 3.4031110 0.06578989 0.06047500 0.0362000 0.06533333 0.02913333 1.060942e-01 9.805874e-10 FALSE FALSE
ENST00000612795 ENSG00000213923 HEK293_OSMI2_2hA HEK293_TMG_2hB CSNK1E protein_coding protein_coding 328.0875 453.1586 263.6576 22.43234 6.85604 -0.7813275 27.52705 38.47055 15.959168 2.862709 0.7775700 -1.26884009 0.08231667 0.0847000 0.06046667 -0.02423333 7.972873e-05 9.805874e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.