ENSG00000204842

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000389154 ENSG00000204842 HEK293_OSMI2_2hA HEK293_TMG_2hB ATXN2 protein_coding protein_coding 23.2742 23.06205 21.04634 1.059175 0.6446167 -0.1318912 5.9444895 8.5064097 3.275948 0.58811619 0.42728439 -1.3739358 0.25366667 0.36936667 0.15666667 -0.21270000 8.035278e-05 1.669459e-08 FALSE TRUE
ENST00000535949 ENSG00000204842 HEK293_OSMI2_2hA HEK293_TMG_2hB ATXN2 protein_coding protein_coding 23.2742 23.06205 21.04634 1.059175 0.6446167 -0.1318912 5.6392747 5.7897941 4.780411 0.75903144 0.58823997 -0.2758522 0.23707500 0.24936667 0.22606667 -0.02330000 8.313325e-01 1.669459e-08 FALSE TRUE
ENST00000542287 ENSG00000204842 HEK293_OSMI2_2hA HEK293_TMG_2hB ATXN2 protein_coding protein_coding 23.2742 23.06205 21.04634 1.059175 0.6446167 -0.1318912 0.5548203 0.0000000 1.394143 0.00000000 0.45253170 7.1335461 0.02444167 0.00000000 0.06763333 0.06763333 1.669459e-08 1.669459e-08 FALSE TRUE
ENST00000548492 ENSG00000204842 HEK293_OSMI2_2hA HEK293_TMG_2hB ATXN2 protein_coding processed_transcript 23.2742 23.06205 21.04634 1.059175 0.6446167 -0.1318912 0.8979691 0.0000000 1.097879 0.00000000 0.70620513 6.7916568 0.03625000 0.00000000 0.05023333 0.05023333 1.834476e-01 1.669459e-08 FALSE FALSE
ENST00000643669 ENSG00000204842 HEK293_OSMI2_2hA HEK293_TMG_2hB ATXN2 protein_coding protein_coding 23.2742 23.06205 21.04634 1.059175 0.6446167 -0.1318912 1.4190122 1.6089906 1.082566 0.28260884 0.50311362 -0.5673745 0.06143750 0.07006667 0.05030000 -0.01976667 6.485760e-01 1.669459e-08 FALSE TRUE
ENST00000647445 ENSG00000204842 HEK293_OSMI2_2hA HEK293_TMG_2hB ATXN2 protein_coding protein_coding 23.2742 23.06205 21.04634 1.059175 0.6446167 -0.1318912 0.6853885 1.8729833 0.000000 0.93654903 0.00000000 -7.5568764 0.02961250 0.08053333 0.00000000 -0.08053333 1.584793e-01 1.669459e-08 FALSE TRUE
ENST00000673436 ENSG00000204842 HEK293_OSMI2_2hA HEK293_TMG_2hB ATXN2 protein_coding protein_coding 23.2742 23.06205 21.04634 1.059175 0.6446167 -0.1318912 1.0527695 0.5120356 2.138487 0.51203561 0.41931923 2.0411011 0.04541667 0.02283333 0.10270000 0.07986667 1.204801e-01 1.669459e-08 FALSE TRUE
MSTRG.8025.16 ENSG00000204842 HEK293_OSMI2_2hA HEK293_TMG_2hB ATXN2 protein_coding   23.2742 23.06205 21.04634 1.059175 0.6446167 -0.1318912 1.4567732 0.7345297 1.581809 0.05440374 0.09282387 1.0962663 0.06475417 0.03190000 0.07523333 0.04333333 2.082354e-04 1.669459e-08 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000204842 E001 0.9900693 0.0689425713 3.420592e-01 4.860471e-01 12 111443485 111444187 703 - 0.391 0.199 -1.326
ENSG00000204842 E002 0.5244761 0.2641054411 5.504816e-01 6.801081e-01 12 111451122 111451190 69 - 0.239 0.112 -1.315
ENSG00000204842 E003 1.9971000 0.0089940540 5.808557e-02 1.233496e-01 12 111451947 111452085 139 - 0.238 0.558 1.836
ENSG00000204842 E004 0.9952782 0.0127305108 1.376281e-01 2.447823e-01 12 111452214 111452214 1 - 0.135 0.389 1.985
ENSG00000204842 E005 1.5467209 0.0086269373 2.625810e-02 6.446859e-02 12 111452215 111452222 8 - 0.135 0.521 2.664
ENSG00000204842 E006 2.6098656 0.0057460556 8.842368e-04 3.558945e-03 12 111452223 111452267 45 - 0.135 0.704 3.471
ENSG00000204842 E007 43.6497295 0.0088870518 4.609889e-02 1.022168e-01 12 111452268 111452295 28 - 1.570 1.688 0.400
ENSG00000204842 E008 83.1665850 0.0005121171 1.202357e-12 2.912824e-11 12 111452296 111452413 118 - 1.732 2.005 0.919
ENSG00000204842 E009 53.0550796 0.0004618462 6.160494e-10 9.505515e-09 12 111452414 111452430 17 - 1.521 1.817 1.006
ENSG00000204842 E010 57.1102063 0.0031678163 3.937133e-13 1.028797e-11 12 111452431 111452444 14 - 1.475 1.874 1.353
ENSG00000204842 E011 53.5842546 0.0045776198 2.897949e-11 5.596409e-10 12 111452445 111452450 6 - 1.454 1.846 1.333
ENSG00000204842 E012 41.2682339 0.0117870873 1.152320e-05 7.548270e-05 12 111452451 111452462 12 - 1.394 1.721 1.119
ENSG00000204842 E013 49.6686720 0.0077455202 9.153197e-07 7.660644e-06 12 111452463 111452481 19 - 1.480 1.796 1.073
ENSG00000204842 E014 79.0227355 0.0030941424 1.399138e-12 3.346326e-11 12 111452482 111452522 41 - 1.662 1.999 1.134
ENSG00000204842 E015 62.0998186 0.0006685106 1.916183e-13 5.238314e-12 12 111452523 111452528 6 - 1.557 1.896 1.145
ENSG00000204842 E016 90.2327132 0.0026344142 7.510242e-15 2.520448e-13 12 111452529 111452564 36 - 1.711 2.057 1.163
ENSG00000204842 E017 93.7066223 0.0009922704 9.170085e-23 7.929005e-21 12 111452565 111452608 44 - 1.689 2.085 1.331
ENSG00000204842 E018 69.2892546 0.0012315237 2.978595e-14 9.139712e-13 12 111452609 111452610 2 - 1.599 1.944 1.165
ENSG00000204842 E019 109.0049546 0.0016637719 1.839471e-24 1.912635e-22 12 111452611 111452682 72 - 1.744 2.152 1.372
ENSG00000204842 E020 67.6885693 0.0045172358 3.143193e-18 1.627408e-16 12 111452683 111452732 50 - 1.470 1.964 1.676
ENSG00000204842 E021 50.6647487 0.0169266920 4.815051e-08 5.212257e-07 12 111452733 111452753 21 - 1.387 1.833 1.522
ENSG00000204842 E022 128.0161976 0.0034785098 3.778224e-06 2.765204e-05 12 111452754 111452840 87 - 1.987 2.163 0.589
ENSG00000204842 E023 25.7540237 0.0059756715 3.529965e-03 1.181254e-02 12 111452841 111453319 479 - 1.553 1.308 -0.844
ENSG00000204842 E024 13.1310592 0.0023389160 5.209850e-02 1.128944e-01 12 111453320 111453485 166 - 1.251 1.047 -0.729
ENSG00000204842 E025 15.8633111 0.0011591390 1.510974e-01 2.631598e-01 12 111453486 111453676 191 - 1.301 1.156 -0.512
ENSG00000204842 E026 126.9898176 0.0002662271 3.973581e-04 1.764115e-03 12 111453677 111453845 169 - 2.041 2.130 0.297
ENSG00000204842 E027 41.0117436 0.0005229106 2.849876e-06 2.143653e-05 12 111453846 111455044 1199 - 1.761 1.481 -0.953
ENSG00000204842 E028 9.2167512 0.0239366863 3.266417e-01 4.700797e-01 12 111455045 111455119 75 - 1.078 0.932 -0.539
ENSG00000204842 E029 29.6154231 0.0091008689 2.062639e-05 1.275579e-04 12 111455120 111455914 795 - 1.656 1.297 -1.233
ENSG00000204842 E030 14.0528597 0.0075187845 1.854774e-01 3.080996e-01 12 111455915 111456028 114 - 1.251 1.100 -0.537
ENSG00000204842 E031 127.0857312 0.0036650602 1.004190e-03 3.973119e-03 12 111456029 111456081 53 - 2.024 2.142 0.396
ENSG00000204842 E032 124.8940974 0.0025769456 1.613224e-02 4.302634e-02 12 111456082 111456136 55 - 2.045 2.118 0.243
ENSG00000204842 E033 114.9455299 0.0056178484 3.025353e-02 7.246365e-02 12 111456137 111456188 52 - 2.003 2.085 0.275
ENSG00000204842 E034 94.9413387 0.0200098233 1.304078e-01 2.347223e-01 12 111456189 111456220 32 - 1.916 2.007 0.307
ENSG00000204842 E035 92.9862168 0.0072632494 3.108540e-02 7.407127e-02 12 111456221 111456256 36 - 1.903 1.999 0.324
ENSG00000204842 E036 107.5826334 0.0034858811 6.186589e-02 1.297585e-01 12 111457214 111457273 60 - 1.989 2.049 0.200
ENSG00000204842 E037 111.2226451 0.0021501405 1.072102e-01 2.014087e-01 12 111457274 111457359 86 - 2.016 2.057 0.136
ENSG00000204842 E038 2.7138961 0.0849471521 2.304911e-02 5.785134e-02 12 111457360 111458401 1042 - 0.787 0.331 -2.164
ENSG00000204842 E039 3.9353212 0.0050306663 6.968382e-01 7.970988e-01 12 111461139 111461305 167 - 0.668 0.704 0.150
ENSG00000204842 E040 41.9040410 0.0056287095 3.509797e-01 4.951784e-01 12 111464662 111464715 54 - 1.676 1.592 -0.285
ENSG00000204842 E041 11.7446906 0.0014679900 2.348455e-01 3.681731e-01 12 111468358 111469425 1068 - 1.036 1.129 0.336
ENSG00000204842 E042 11.1947292 0.0125582824 8.491042e-02 1.672631e-01 12 111469426 111469817 392 - 0.956 1.130 0.636
ENSG00000204842 E043 9.9876766 0.0089837212 5.369954e-01 6.686484e-01 12 111469818 111470107 290 - 1.078 0.987 -0.333
ENSG00000204842 E044 141.5533231 0.0002731888 6.696619e-01 7.763834e-01 12 111470108 111470240 133 - 2.166 2.127 -0.129
ENSG00000204842 E045 156.4267142 0.0003584993 9.682622e-01 9.841797e-01 12 111470558 111470742 185 - 2.198 2.171 -0.090
ENSG00000204842 E046 1.0621005 0.0170971615 1.379957e-01 2.452864e-01 12 111470743 111471945 1203 - 0.135 0.389 1.988
ENSG00000204842 E047 11.7479248 0.0015353434 1.537142e-01 2.667121e-01 12 111479070 111479102 33 - 1.021 1.138 0.424
ENSG00000204842 E048 0.4449813 0.0228794961 4.716049e-01 6.106913e-01 12 111482787 111482831 45 - 0.238 0.110 -1.337
ENSG00000204842 E049 0.0000000       12 111485109 111485264 156 -      
ENSG00000204842 E050 31.3757184 0.0006663450 4.656636e-01 6.053272e-01 12 111485265 111485270 6 - 1.481 1.501 0.072
ENSG00000204842 E051 100.1232662 0.0010168122 9.898843e-01 9.977792e-01 12 111485271 111485331 61 - 2.003 1.978 -0.084
ENSG00000204842 E052 164.1262548 0.0036312751 8.885865e-01 9.327714e-01 12 111485713 111485865 153 - 2.220 2.192 -0.096
ENSG00000204842 E053 105.2585161 0.0019036753 7.010741e-01 8.003928e-01 12 111486761 111486824 64 - 2.037 1.996 -0.137
ENSG00000204842 E054 137.9066153 0.0077277977 5.068286e-01 6.424738e-01 12 111488476 111488584 109 - 2.165 2.106 -0.199
ENSG00000204842 E055 159.2330682 0.0103510414 1.438600e-02 3.910220e-02 12 111488585 111488780 196 - 2.280 2.123 -0.526
ENSG00000204842 E056 79.0773600 0.0254314859 9.684683e-02 1.856699e-01 12 111509549 111509619 71 - 1.978 1.821 -0.527
ENSG00000204842 E057 57.2149326 0.0181477240 3.398652e-01 4.837921e-01 12 111509891 111509918 28 - 1.805 1.709 -0.325
ENSG00000204842 E058 96.9767338 0.0050128696 1.383893e-01 2.458499e-01 12 111509919 111509998 80 - 2.032 1.936 -0.324
ENSG00000204842 E059 90.0949738 0.0078361310 1.586125e-02 4.242543e-02 12 111510385 111510444 60 - 2.034 1.876 -0.531
ENSG00000204842 E060 113.2568528 0.0074560608 5.787881e-02 1.229946e-01 12 111510445 111510577 133 - 2.114 1.992 -0.410
ENSG00000204842 E061 48.5661340 0.0005700827 9.026248e-04 3.622795e-03 12 111510578 111510582 5 - 1.785 1.591 -0.658
ENSG00000204842 E062 1.9855525 0.0099567814 4.260218e-03 1.387031e-02 12 111510583 111512107 1525 - 0.701 0.199 -2.794
ENSG00000204842 E063 0.1515154 0.0422255786 4.168953e-01   12 111512473 111512566 94 - 0.135 0.000 -10.237
ENSG00000204842 E064 1.0498971 0.3573684682 3.382366e-01 4.821114e-01 12 111512567 111513356 790 - 0.453 0.193 -1.716
ENSG00000204842 E065 115.2635796 0.0030529597 1.150076e-03 4.471502e-03 12 111513357 111513473 117 - 2.140 1.979 -0.539
ENSG00000204842 E066 85.0958908 0.0028473873 3.783119e-03 1.253443e-02 12 111513474 111513539 66 - 2.008 1.851 -0.529
ENSG00000204842 E067 120.1470264 0.0017361889 6.083299e-03 1.883048e-02 12 111516154 111516363 210 - 2.142 2.014 -0.429
ENSG00000204842 E068 0.6568746 0.0225519343 4.004392e-01 5.441413e-01 12 111516364 111516399 36 - 0.135 0.272 1.249
ENSG00000204842 E069 115.4269852 0.0027361091 4.231951e-04 1.863319e-03 12 111518249 111518427 179 - 2.148 1.979 -0.568
ENSG00000204842 E070 1.1971461 0.2569618179 1.978325e-01 3.235112e-01 12 111519832 111519878 47 - 0.506 0.194 -1.965
ENSG00000204842 E071 73.2648460 0.0097723682 2.465331e-02 6.116737e-02 12 111519879 111519912 34 - 1.952 1.787 -0.552
ENSG00000204842 E072 97.9304672 0.0166365460 1.156159e-02 3.249329e-02 12 111519913 111520004 92 - 2.096 1.892 -0.686
ENSG00000204842 E073 61.8891165 0.0262128986 3.115945e-02 7.420944e-02 12 111520005 111520019 15 - 1.910 1.685 -0.762
ENSG00000204842 E074 92.2242121 0.0142989676 4.607288e-04 2.009339e-03 12 111520020 111520076 57 - 2.099 1.832 -0.897
ENSG00000204842 E075 103.4111999 0.0071748594 7.116786e-09 9.016008e-08 12 111520882 111520973 92 - 2.174 1.841 -1.120
ENSG00000204842 E076 125.1612100 0.0023284277 3.003684e-17 1.378820e-15 12 111525192 111525316 125 - 2.266 1.911 -1.190
ENSG00000204842 E077 123.1460731 0.0048886953 1.500466e-11 3.035980e-10 12 111552280 111552430 151 - 2.253 1.916 -1.128
ENSG00000204842 E078 0.0000000       12 111552431 111552734 304 -      
ENSG00000204842 E079 75.9697628 0.0106582670 1.417604e-08 1.699645e-07 12 111552906 111552977 72 - 2.066 1.677 -1.311
ENSG00000204842 E080 51.2186559 0.0130960527 5.436187e-07 4.774324e-06 12 111554158 111554217 60 - 1.901 1.504 -1.345
ENSG00000204842 E081 30.6704443 0.0243365736 5.881600e-06 4.121820e-05 12 111555883 111555919 37 - 1.712 1.239 -1.626
ENSG00000204842 E082 0.1515154 0.0422255786 4.168953e-01   12 111597749 111597915 167 - 0.135 0.000 -10.237
ENSG00000204842 E083 4.1735977 0.1255096052 5.730979e-02 1.220016e-01 12 111597916 111598566 651 - 0.920 0.479 -1.860
ENSG00000204842 E084 62.2165800 0.0210004524 4.579608e-11 8.554457e-10 12 111598784 111599574 791 - 2.047 1.464 -1.975
ENSG00000204842 E085 1.0726991 0.0118097508 1.738563e-01 2.932021e-01 12 111599575 111599676 102 - 0.451 0.198 -1.658