ENSG00000204516

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000494577 ENSG00000204516 HEK293_OSMI2_2hA HEK293_TMG_2hB MICB protein_coding retained_intron 3.587267 4.844018 2.364006 0.2625957 0.1114034 -1.031856 0.5625008 0.2717034 0.4517333 0.09546994 0.07556054 0.7128826 0.1642417 0.05656667 0.1894667 0.1329000 0.01635958 0.01635958 FALSE FALSE
ENST00000538442 ENSG00000204516 HEK293_OSMI2_2hA HEK293_TMG_2hB MICB protein_coding protein_coding 3.587267 4.844018 2.364006 0.2625957 0.1114034 -1.031856 3.0063225 4.5059974 1.8789321 0.31622164 0.06241475 -1.2574738 0.8310458 0.92976667 0.7970333 -0.1327333 0.09446406 0.01635958 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000204516 E001 16.3985364 0.0682598322 0.198529046 0.324350684 6 31494881 31494995 115 + 1.285 1.144 -0.499
ENSG00000204516 E002 0.0000000       6 31498086 31498144 59 +      
ENSG00000204516 E003 0.1482932 0.0413947089 1.000000000   6 31498145 31498263 119 + 0.000 0.084 7.820
ENSG00000204516 E004 37.7852048 0.0041695754 0.057872978 0.122986326 6 31505617 31505871 255 + 1.597 1.508 -0.304
ENSG00000204516 E005 0.5503986 0.0213185113 0.862766632 0.915498642 6 31505935 31506142 208 + 0.174 0.155 -0.199
ENSG00000204516 E006 29.0288720 0.0009027298 0.040591166 0.092105337 6 31506143 31506271 129 + 1.500 1.395 -0.361
ENSG00000204516 E007 36.8478271 0.0007273288 0.085668973 0.168463048 6 31506272 31506430 159 + 1.580 1.509 -0.241
ENSG00000204516 E008 46.4039009 0.0006385921 0.843640003 0.902656032 6 31507022 31507300 279 + 1.612 1.632 0.065
ENSG00000204516 E009 24.4822393 0.0008646904 0.866826541 0.918284234 6 31507400 31507531 132 + 1.347 1.363 0.058
ENSG00000204516 E010 126.1658387 0.0123519912 0.001022356 0.004036055 6 31509782 31511124 1343 + 1.913 2.091 0.596