ENSG00000204463

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000362049 ENSG00000204463 HEK293_OSMI2_2hA HEK293_TMG_2hB BAG6 protein_coding protein_coding 197.0785 307.7033 132.1266 7.16782 3.832322 -1.219556 15.053158 16.492146 15.3250590 2.924651 1.7589634 -0.1058200 0.08504167 0.05350000 0.115433333 0.061933333 0.010637103 2.338059e-15 FALSE TRUE
ENST00000422948 ENSG00000204463 HEK293_OSMI2_2hA HEK293_TMG_2hB BAG6 protein_coding protein_coding 197.0785 307.7033 132.1266 7.16782 3.832322 -1.219556 10.414215 23.845768 1.5099159 3.265171 0.7600228 -3.9722747 0.04089167 0.07746667 0.011133333 -0.066333333 0.220097205 2.338059e-15 FALSE TRUE
ENST00000451898 ENSG00000204463 HEK293_OSMI2_2hA HEK293_TMG_2hB BAG6 protein_coding protein_coding 197.0785 307.7033 132.1266 7.16782 3.832322 -1.219556 3.310548 2.449559 9.3862806 2.449559 3.3645115 1.9336899 0.02208333 0.00810000 0.071500000 0.063400000 0.074373562 2.338059e-15 FALSE FALSE
ENST00000462682 ENSG00000204463 HEK293_OSMI2_2hA HEK293_TMG_2hB BAG6 protein_coding processed_transcript 197.0785 307.7033 132.1266 7.16782 3.832322 -1.219556 8.563019 3.362027 9.0696852 1.249164 1.2417605 1.4290260 0.05393750 0.01080000 0.068433333 0.057633333 0.002729539 2.338059e-15 FALSE TRUE
ENST00000464126 ENSG00000204463 HEK293_OSMI2_2hA HEK293_TMG_2hB BAG6 protein_coding processed_transcript 197.0785 307.7033 132.1266 7.16782 3.832322 -1.219556 18.636460 57.264492 0.8701891 7.876637 0.4874794 -6.0239355 0.06209167 0.18646667 0.006666667 -0.179800000 0.012557144 2.338059e-15 FALSE TRUE
ENST00000676615 ENSG00000204463 HEK293_OSMI2_2hA HEK293_TMG_2hB BAG6 protein_coding protein_coding 197.0785 307.7033 132.1266 7.16782 3.832322 -1.219556 10.245713 15.576369 4.9869464 3.228717 0.8538578 -1.6411662 0.05086667 0.05040000 0.037466667 -0.012933333 0.698507778 2.338059e-15 FALSE TRUE
MSTRG.28034.12 ENSG00000204463 HEK293_OSMI2_2hA HEK293_TMG_2hB BAG6 protein_coding   197.0785 307.7033 132.1266 7.16782 3.832322 -1.219556 30.777646 64.907999 15.7540718 3.130356 2.3861509 -2.0419783 0.14179583 0.21080000 0.120066667 -0.090733333 0.035007435 2.338059e-15 FALSE TRUE
MSTRG.28034.14 ENSG00000204463 HEK293_OSMI2_2hA HEK293_TMG_2hB BAG6 protein_coding   197.0785 307.7033 132.1266 7.16782 3.832322 -1.219556 13.035352 17.911756 11.6020262 1.482846 0.8824093 -0.6260923 0.07067500 0.05810000 0.087866667 0.029766667 0.031556914 2.338059e-15 FALSE TRUE
MSTRG.28034.6 ENSG00000204463 HEK293_OSMI2_2hA HEK293_TMG_2hB BAG6 protein_coding   197.0785 307.7033 132.1266 7.16782 3.832322 -1.219556 14.609336 19.509969 4.4505815 2.653160 1.8200834 -2.1296470 0.07630833 0.06306667 0.033733333 -0.029333333 0.319941999 2.338059e-15 FALSE TRUE
MSTRG.28034.8 ENSG00000204463 HEK293_OSMI2_2hA HEK293_TMG_2hB BAG6 protein_coding   197.0785 307.7033 132.1266 7.16782 3.832322 -1.219556 10.333312 16.074894 6.7147809 2.336591 0.3706139 -1.2581473 0.05169167 0.05220000 0.050866667 -0.001333333 1.000000000 2.338059e-15 FALSE TRUE
MSTRG.28034.9 ENSG00000204463 HEK293_OSMI2_2hA HEK293_TMG_2hB BAG6 protein_coding   197.0785 307.7033 132.1266 7.16782 3.832322 -1.219556 12.727018 15.150231 16.6364890 3.558356 0.7996709 0.1349262 0.06955000 0.04976667 0.125966667 0.076200000 0.014997130 2.338059e-15 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000204463 E001 2.1003418 6.774297e-03 7.727229e-01 8.533061e-01 6 31638875 31638946 72 - 0.402 0.459 0.297
ENSG00000204463 E002 0.8803962 1.345485e-02 6.606364e-01 7.692698e-01 6 31638947 31638989 43 - 0.179 0.263 0.712
ENSG00000204463 E003 1.1352526 9.505506e-02 5.198546e-01 6.539285e-01 6 31638990 31639020 31 - 0.179 0.313 1.055
ENSG00000204463 E004 0.9138074 1.468950e-01 6.963855e-01 7.967493e-01 6 31639021 31639026 6 - 0.179 0.266 0.731
ENSG00000204463 E005 1.2438049 6.372155e-02 3.936243e-01 5.375143e-01 6 31639027 31639027 1 - 0.179 0.353 1.302
ENSG00000204463 E006 8.1974453 2.139371e-03 2.277753e-06 1.749852e-05 6 31639028 31639028 1 - 0.179 1.007 4.172
ENSG00000204463 E007 8.1974453 2.139371e-03 2.277753e-06 1.749852e-05 6 31639029 31639030 2 - 0.179 1.007 4.172
ENSG00000204463 E008 18.1974951 1.039286e-03 1.566951e-03 5.852225e-03 6 31639031 31639051 21 - 0.961 1.286 1.171
ENSG00000204463 E009 272.9842207 5.859620e-03 2.668708e-04 1.244746e-03 6 31639052 31639084 33 - 2.239 2.416 0.590
ENSG00000204463 E010 1198.3015564 4.275455e-03 2.413420e-12 5.563582e-11 6 31639085 31639226 142 - 2.817 3.070 0.841
ENSG00000204463 E011 17.9154046 1.053054e-03 5.534132e-01 6.825744e-01 6 31639227 31639499 273 - 1.250 1.204 -0.163
ENSG00000204463 E012 837.4941422 2.673124e-03 4.090540e-13 1.066818e-11 6 31639500 31639646 147 - 2.684 2.910 0.751
ENSG00000204463 E013 19.7700056 1.424511e-02 3.545871e-02 8.253529e-02 6 31639647 31640198 552 - 1.388 1.191 -0.688
ENSG00000204463 E014 1870.0267439 3.033244e-03 4.630613e-15 1.601416e-13 6 31640199 31640306 108 - 3.025 3.260 0.781
ENSG00000204463 E015 33.1451240 7.448313e-03 3.161309e-04 1.445286e-03 6 31640307 31640384 78 - 1.651 1.393 -0.883
ENSG00000204463 E016 2166.1046276 2.377800e-03 1.140568e-10 1.993884e-09 6 31640385 31640528 144 - 3.140 3.313 0.575
ENSG00000204463 E017 11.6811962 1.472305e-03 1.919293e-04 9.293636e-04 6 31640529 31640539 11 - 1.286 0.929 -1.289
ENSG00000204463 E018 1640.6832274 2.432057e-03 1.530616e-07 1.499874e-06 6 31640645 31640704 60 - 3.040 3.187 0.491
ENSG00000204463 E019 18.6893660 4.048913e-02 5.968991e-03 1.852532e-02 6 31640705 31640791 87 - 1.463 1.122 -1.197
ENSG00000204463 E020 2376.4650971 3.569413e-03 1.060984e-04 5.500528e-04 6 31640792 31640938 147 - 3.217 3.344 0.421
ENSG00000204463 E021 8.2455268 1.988098e-03 7.920652e-11 1.421777e-09 6 31640939 31641103 165 - 1.308 0.593 -2.729
ENSG00000204463 E022 2093.0903221 2.655068e-03 1.035599e-05 6.860549e-05 6 31641104 31641228 125 - 3.162 3.289 0.423
ENSG00000204463 E023 7.6609654 2.147019e-03 2.247092e-02 5.666469e-02 6 31641229 31641319 91 - 1.067 0.807 -0.981
ENSG00000204463 E024 1773.6733640 2.415721e-04 1.056349e-23 1.013277e-21 6 31641320 31641422 103 - 3.085 3.217 0.439
ENSG00000204463 E025 15.1236806 1.711472e-03 5.118895e-16 2.009864e-14 6 31641423 31641538 116 - 1.545 0.847 -2.497
ENSG00000204463 E026 1736.3222738 2.265404e-04 5.518838e-04 2.353943e-03 6 31641539 31641592 54 - 3.140 3.189 0.163
ENSG00000204463 E027 7.4803168 2.219982e-03 1.111424e-01 2.072259e-01 6 31641593 31641775 183 - 1.007 0.821 -0.704
ENSG00000204463 E028 1839.4291291 2.509155e-04 4.248107e-03 1.383658e-02 6 31641776 31641847 72 - 3.170 3.212 0.141
ENSG00000204463 E029 1850.8061898 5.017730e-04 4.107465e-03 1.344437e-02 6 31641848 31641945 98 - 3.167 3.217 0.166
ENSG00000204463 E030 1451.9370984 1.037700e-03 1.550820e-02 4.164655e-02 6 31642112 31642218 107 - 3.058 3.113 0.183
ENSG00000204463 E031 755.0892312 2.149709e-03 3.136974e-04 1.435588e-03 6 31642219 31642300 82 - 2.732 2.841 0.361
ENSG00000204463 E032 378.6671371 1.949716e-03 4.832990e-07 4.285894e-06 6 31642301 31642403 103 - 2.386 2.552 0.553
ENSG00000204463 E033 3.5555680 5.181114e-03 1.293862e-02 3.576802e-02 6 31642684 31642828 145 - 0.852 0.489 -1.552
ENSG00000204463 E034 131.4379186 7.565211e-03 3.101158e-03 1.056349e-02 6 31642829 31642831 3 - 1.919 2.099 0.607
ENSG00000204463 E035 531.5752394 1.126322e-04 1.704730e-13 4.695493e-12 6 31642832 31642958 127 - 2.550 2.695 0.485
ENSG00000204463 E036 1165.5199684 1.088636e-04 6.124538e-04 2.578791e-03 6 31642959 31643100 142 - 2.964 3.015 0.168
ENSG00000204463 E037 636.6413770 1.075666e-03 8.244906e-01 8.894352e-01 6 31643101 31643112 12 - 2.731 2.745 0.046
ENSG00000204463 E038 547.6529260 1.065506e-03 4.643856e-01 6.041094e-01 6 31643113 31643115 3 - 2.657 2.683 0.086
ENSG00000204463 E039 917.5687866 6.437836e-04 8.718137e-01 9.215525e-01 6 31643890 31643974 85 - 2.891 2.903 0.038
ENSG00000204463 E040 505.0387461 1.366322e-03 8.878898e-01 9.323241e-01 6 31643975 31643977 3 - 2.632 2.644 0.040
ENSG00000204463 E041 1312.8048637 9.120761e-05 1.534675e-01 2.663743e-01 6 31644082 31644194 113 - 3.062 3.052 -0.033
ENSG00000204463 E042 49.2544015 2.980375e-03 2.937803e-08 3.311465e-07 6 31644195 31644227 33 - 1.846 1.536 -1.050
ENSG00000204463 E043 38.7668458 2.734167e-03 9.664106e-17 4.164777e-15 6 31644228 31644306 79 - 1.846 1.348 -1.701
ENSG00000204463 E044 270.4849187 1.828606e-04 9.988835e-06 6.639609e-05 6 31644307 31644316 10 - 2.442 2.342 -0.334
ENSG00000204463 E045 422.1890379 1.332142e-04 4.685351e-05 2.658199e-04 6 31644317 31644414 98 - 2.616 2.544 -0.243
ENSG00000204463 E046 27.9209776 1.756440e-02 1.680954e-06 1.329153e-05 6 31644494 31644524 31 - 1.670 1.242 -1.476
ENSG00000204463 E047 1055.3691795 6.408525e-04 1.172127e-01 2.159678e-01 6 31644525 31644602 78 - 2.976 2.957 -0.063
ENSG00000204463 E048 12.9736608 1.546576e-02 1.091933e-01 2.043560e-01 6 31644603 31644629 27 - 1.211 1.041 -0.610
ENSG00000204463 E049 1683.3727092 5.745088e-04 7.625891e-07 6.499762e-06 6 31644946 31645198 253 - 3.211 3.147 -0.213
ENSG00000204463 E050 1438.9455703 7.211417e-04 1.974006e-07 1.893037e-06 6 31645407 31645604 198 - 3.151 3.075 -0.252
ENSG00000204463 E051 1054.5028409 2.359741e-03 1.206176e-03 4.661304e-03 6 31646394 31646523 130 - 3.015 2.941 -0.246
ENSG00000204463 E052 474.1613320 2.325664e-03 2.221864e-03 7.911390e-03 6 31647591 31647592 2 - 2.672 2.592 -0.268
ENSG00000204463 E053 480.7004608 2.142835e-03 8.851304e-04 3.562164e-03 6 31647593 31647593 1 - 2.682 2.596 -0.286
ENSG00000204463 E054 540.4488453 2.209680e-03 4.700135e-04 2.045406e-03 6 31647594 31647599 6 - 2.736 2.646 -0.299
ENSG00000204463 E055 552.5439539 2.376937e-03 2.942349e-03 1.009470e-02 6 31647600 31647603 4 - 2.736 2.660 -0.255
ENSG00000204463 E056 892.8940722 2.075784e-03 6.910658e-04 2.866597e-03 6 31647604 31647679 76 - 2.945 2.868 -0.256
ENSG00000204463 E057 594.8171296 1.223740e-03 4.916379e-06 3.504641e-05 6 31647680 31647705 26 - 2.782 2.685 -0.323
ENSG00000204463 E058 863.1700731 2.119265e-03 2.581991e-06 1.961309e-05 6 31647706 31647787 82 - 2.954 2.843 -0.368
ENSG00000204463 E059 630.0418792 1.124828e-03 3.605197e-09 4.818776e-08 6 31647788 31647826 39 - 2.825 2.702 -0.408
ENSG00000204463 E060 833.2351113 2.072228e-03 4.657318e-08 5.055666e-07 6 31648677 31648751 75 - 2.953 2.822 -0.434
ENSG00000204463 E061 481.7423732 2.606467e-03 2.461111e-07 2.318153e-06 6 31648911 31648911 1 - 2.725 2.579 -0.488
ENSG00000204463 E062 644.0500797 2.559700e-03 6.396439e-08 6.744886e-07 6 31648912 31648964 53 - 2.852 2.706 -0.486
ENSG00000204463 E063 1524.6996664 1.082808e-03 1.646911e-13 4.544164e-12 6 31649199 31649395 197 - 3.213 3.086 -0.422
ENSG00000204463 E064 1236.6711037 1.202875e-03 9.568712e-18 4.717054e-16 6 31649510 31649627 118 - 3.145 2.984 -0.534
ENSG00000204463 E065 1363.6422806 3.083238e-03 1.896409e-10 3.190100e-09 6 31651656 31651776 121 - 3.194 3.023 -0.568
ENSG00000204463 E066 20.6731073 9.040582e-04 5.910062e-11 1.082513e-09 6 31651777 31651865 89 - 1.581 1.095 -1.697
ENSG00000204463 E067 16.8785376 1.238605e-03 1.187809e-06 9.708221e-06 6 31651866 31651901 36 - 1.454 1.057 -1.400
ENSG00000204463 E068 29.1684805 6.901218e-04 2.076033e-08 2.412725e-07 6 31651902 31652060 159 - 1.656 1.295 -1.239
ENSG00000204463 E069 12.4456768 1.443186e-03 2.775469e-03 9.599874e-03 6 31652061 31652079 19 - 1.262 0.979 -1.018
ENSG00000204463 E070 16.5994402 1.173563e-03 6.640230e-06 4.597514e-05 6 31652080 31652234 155 - 1.430 1.057 -1.317
ENSG00000204463 E071 4.9498562 5.229291e-03 9.640098e-02 1.849626e-01 6 31652235 31652246 12 - 0.882 0.657 -0.902
ENSG00000204463 E072 87.5440079 3.341072e-04 1.645535e-04 8.116157e-04 6 31652247 31652399 153 - 1.987 1.840 -0.497
ENSG00000204463 E073 287.9076205 8.329803e-03 3.389721e-03 1.140768e-02 6 31652400 31652423 24 - 2.494 2.361 -0.444
ENSG00000204463 E074 845.1009028 9.293391e-03 1.178419e-04 6.039440e-04 6 31652424 31652512 89 - 2.989 2.815 -0.577
ENSG00000204463 E075 785.9669783 1.049735e-02 3.542422e-04 1.596530e-03 6 31652513 31652972 460 - 2.953 2.785 -0.559