ENSG00000198707

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000547691 ENSG00000198707 HEK293_OSMI2_2hA HEK293_TMG_2hB CEP290 protein_coding protein_coding 6.311153 2.994422 7.231328 0.6230466 0.2886424 1.269167 0.51205515 0.3467350 0.45712004 0.1961516 0.24477232 0.3889406 0.08972500 0.0968000 0.06106667 -0.03573333 9.150990e-01 1.513786e-33 FALSE TRUE
ENST00000552810 ENSG00000198707 HEK293_OSMI2_2hA HEK293_TMG_2hB CEP290 protein_coding protein_coding 6.311153 2.994422 7.231328 0.6230466 0.2886424 1.269167 1.97508310 0.0000000 4.11450781 0.0000000 0.21845628 8.6880782 0.23491250 0.0000000 0.57053333 0.57053333 5.492253e-25 1.513786e-33 FALSE TRUE
ENST00000671777 ENSG00000198707 HEK293_OSMI2_2hA HEK293_TMG_2hB CEP290 protein_coding processed_transcript 6.311153 2.994422 7.231328 0.6230466 0.2886424 1.269167 1.14088503 1.5891315 0.00000000 0.2619066 0.00000000 -7.3211448 0.25184583 0.5403333 0.00000000 -0.54033333 1.513786e-33 1.513786e-33 FALSE TRUE
ENST00000674971 ENSG00000198707 HEK293_OSMI2_2hA HEK293_TMG_2hB CEP290 protein_coding nonsense_mediated_decay 6.311153 2.994422 7.231328 0.6230466 0.2886424 1.269167 0.54632164 0.0000000 0.63500818 0.0000000 0.03074063 6.0112456 0.07690000 0.0000000 0.08793333 0.08793333 5.215605e-07 1.513786e-33 TRUE TRUE
ENST00000675894 ENSG00000198707 HEK293_OSMI2_2hA HEK293_TMG_2hB CEP290 protein_coding retained_intron 6.311153 2.994422 7.231328 0.6230466 0.2886424 1.269167 0.38862925 0.5033198 0.09436362 0.1671155 0.05145197 -2.2982390 0.09577500 0.1631000 0.01353333 -0.14956667 3.583756e-04 1.513786e-33 FALSE TRUE
ENST00000676074 ENSG00000198707 HEK293_OSMI2_2hA HEK293_TMG_2hB CEP290 protein_coding nonsense_mediated_decay 6.311153 2.994422 7.231328 0.6230466 0.2886424 1.269167 0.06040996 0.1938251 0.00000000 0.1175053 0.00000000 -4.3492597 0.01404583 0.0622000 0.00000000 -0.06220000 3.862222e-02 1.513786e-33 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000198707 E001 50.3817280 0.0036103472 1.380571e-22 1.173901e-20 12 88049016 88049414 399 - 1.426 1.985 1.896
ENSG00000198707 E002 40.8135328 0.0005782274 5.783873e-13 1.474549e-11 12 88050354 88050433 80 - 1.391 1.817 1.453
ENSG00000198707 E003 46.1648211 0.0005169615 2.592487e-14 8.022522e-13 12 88053652 88053746 95 - 1.445 1.868 1.440
ENSG00000198707 E004 6.8579782 0.0026668801 1.806247e-04 8.807022e-04 12 88053747 88054339 593 - 0.669 1.138 1.796
ENSG00000198707 E005 34.0290989 0.0005953680 2.827848e-10 4.621924e-09 12 88054340 88054413 74 - 1.320 1.729 1.399
ENSG00000198707 E006 11.5510867 0.0269107917 3.457186e-02 8.084449e-02 12 88054414 88055575 1162 - 0.943 1.201 0.940
ENSG00000198707 E007 49.1084557 0.0004620164 3.236124e-06 2.403741e-05 12 88055576 88055717 142 - 1.523 1.786 0.892
ENSG00000198707 E008 46.3823593 0.0005094043 6.915639e-05 3.759821e-04 12 88058848 88059020 173 - 1.508 1.741 0.792
ENSG00000198707 E009 0.0000000       12 88059021 88059192 172 -      
ENSG00000198707 E010 36.6633465 0.0010214995 3.132718e-05 1.855333e-04 12 88059898 88060020 123 - 1.398 1.670 0.931
ENSG00000198707 E011 41.6485878 0.0046670045 1.223976e-02 3.410934e-02 12 88060830 88060994 165 - 1.475 1.652 0.605
ENSG00000198707 E012 0.0000000       12 88061978 88062113 136 -      
ENSG00000198707 E013 28.0661341 0.0007374888 2.244480e-01 3.557469e-01 12 88062692 88062778 87 - 1.332 1.423 0.317
ENSG00000198707 E014 33.3755706 0.0008010697 3.950281e-01 5.388699e-01 12 88063981 88064115 135 - 1.413 1.470 0.198
ENSG00000198707 E015 7.0553229 0.0145820574 1.863627e-01 3.091825e-01 12 88064116 88067203 3088 - 0.841 0.603 -0.981
ENSG00000198707 E016 0.0000000       12 88068038 88068046 9 -      
ENSG00000198707 E017 27.9903726 0.0010500763 2.823902e-02 6.848413e-02 12 88068522 88068645 124 - 1.315 1.481 0.576
ENSG00000198707 E018 1.4725022 0.7364665645 6.833514e-01 7.865651e-01 12 88068646 88069095 450 - 0.327 0.383 0.332
ENSG00000198707 E019 36.4874635 0.0007018139 7.944067e-03 2.363902e-02 12 88071294 88071449 156 - 1.427 1.602 0.602
ENSG00000198707 E020 39.9094916 0.0005037290 9.209604e-02 1.783870e-01 12 88071781 88071926 146 - 1.478 1.586 0.367
ENSG00000198707 E021 32.1478055 0.0006767467 8.720231e-01 9.217071e-01 12 88077222 88077344 123 - 1.405 1.411 0.020
ENSG00000198707 E022 43.5566784 0.0131629538 1.063381e-01 2.001454e-01 12 88077697 88077918 222 - 1.507 1.640 0.456
ENSG00000198707 E023 34.1485367 0.0006207722 6.025479e-01 7.235043e-01 12 88079092 88079229 138 - 1.427 1.459 0.111
ENSG00000198707 E024 44.3341533 0.0175320260 7.597377e-01 8.440215e-01 12 88080182 88080395 214 - 1.545 1.531 -0.046
ENSG00000198707 E025 34.3767098 0.0089111194 5.901303e-01 7.130546e-01 12 88083031 88083230 200 - 1.424 1.474 0.172
ENSG00000198707 E026 22.2255922 0.0010790306 5.446991e-01 6.751169e-01 12 88083847 88083954 108 - 1.247 1.296 0.171
ENSG00000198707 E027 36.2937405 0.0030126354 3.464551e-01 4.905850e-01 12 88084586 88084852 267 - 1.447 1.513 0.228
ENSG00000198707 E028 34.2123069 0.0009353347 1.388941e-01 2.465802e-01 12 88086039 88086173 135 - 1.458 1.328 -0.450
ENSG00000198707 E029 26.4249291 0.0007239609 9.112580e-01 9.476437e-01 12 88086391 88086498 108 - 1.329 1.312 -0.060
ENSG00000198707 E030 0.6611159 0.0252851628 6.145431e-01 7.329614e-01 12 88086499 88086997 499 - 0.153 0.243 0.827
ENSG00000198707 E031 27.1359968 0.0053125511 9.642765e-01 9.814871e-01 12 88087780 88087944 165 - 1.341 1.329 -0.042
ENSG00000198707 E032 39.8609622 0.0027344236 1.836257e-02 4.792722e-02 12 88089032 88089335 304 - 1.532 1.328 -0.705
ENSG00000198707 E033 23.1111091 0.0010628800 9.361050e-03 2.718452e-02 12 88089336 88089487 152 - 1.317 1.031 -1.020
ENSG00000198707 E034 0.0000000       12 88089488 88090727 1240 -      
ENSG00000198707 E035 23.3782993 0.0140277215 4.649506e-03 1.495729e-02 12 88090728 88090839 112 - 1.329 0.967 -1.297
ENSG00000198707 E036 28.0877347 0.0210011850 9.468084e-02 1.824052e-01 12 88092681 88092832 152 - 1.385 1.188 -0.693
ENSG00000198707 E037 0.1451727 0.0434335707 1.000000e+00   12 88093597 88093769 173 - 0.057 0.000 -10.510
ENSG00000198707 E038 32.4380620 0.0006608195 7.755772e-03 2.316497e-02 12 88093770 88093975 206 - 1.451 1.204 -0.861
ENSG00000198707 E039 21.7927904 0.0008522333 1.046976e-02 2.990748e-02 12 88096888 88096999 112 - 1.290 1.000 -1.039
ENSG00000198707 E040 28.1258858 0.0070943358 1.886357e-02 4.903398e-02 12 88102838 88103011 174 - 1.393 1.139 -0.892
ENSG00000198707 E041 14.6767997 0.0013082692 3.157141e-02 7.501611e-02 12 88103012 88106674 3663 - 1.133 0.845 -1.067
ENSG00000198707 E042 31.4252642 0.0077367132 4.255827e-02 9.574094e-02 12 88106675 88106905 231 - 1.433 1.226 -0.724
ENSG00000198707 E043 16.7934605 0.0010364821 1.922071e-04 9.305291e-04 12 88106996 88107098 103 - 1.207 0.677 -2.011
ENSG00000198707 E044 14.5052003 0.0025580078 4.874885e-03 1.558126e-02 12 88109066 88109181 116 - 1.141 0.740 -1.514
ENSG00000198707 E045 6.8935239 0.0298824475 2.128444e-01 3.418850e-01 12 88111202 88111213 12 - 0.840 0.602 -0.984
ENSG00000198707 E046 11.4177257 0.0015565982 1.031088e-01 1.952116e-01 12 88111214 88111301 88 - 1.031 0.796 -0.893
ENSG00000198707 E047 11.0607865 0.0015426490 2.112205e-02 5.385584e-02 12 88111302 88111347 46 - 1.031 0.677 -1.378
ENSG00000198707 E048 8.0702866 0.0020862160 7.113616e-02 1.452260e-01 12 88111348 88111351 4 - 0.906 0.602 -1.235
ENSG00000198707 E049 21.0724289 0.0076915528 1.785637e-03 6.553343e-03 12 88111694 88111858 165 - 1.293 0.889 -1.466
ENSG00000198707 E050 17.4919759 0.0115136618 1.131678e-03 4.410016e-03 12 88114420 88114562 143 - 1.218 0.742 -1.782
ENSG00000198707 E051 14.3518345 0.0017060789 1.615706e-02 4.307313e-02 12 88115098 88115182 85 - 1.128 0.796 -1.243
ENSG00000198707 E052 0.8878743 0.0131383287 3.421681e-01 4.861643e-01 12 88115478 88115570 93 - 0.267 0.000 -13.096
ENSG00000198707 E053 0.5964967 0.0234011461 6.083155e-01 7.280855e-01 12 88115766 88116533 768 - 0.153 0.243 0.821
ENSG00000198707 E054 16.7967939 0.0012888262 2.790391e-03 9.645471e-03 12 88117033 88117145 113 - 1.196 0.796 -1.484
ENSG00000198707 E055 15.2103416 0.0175921121 6.882213e-04 2.856111e-03 12 88118483 88118570 88 - 1.167 0.603 -2.186
ENSG00000198707 E056 0.6017953 0.1310259922 6.527355e-01 7.634012e-01 12 88118571 88118642 72 - 0.195 0.000 -12.514
ENSG00000198707 E057 18.1432455 0.0009616891 9.327071e-09 1.156783e-07 12 88118643 88118743 101 - 1.257 0.243 -4.510
ENSG00000198707 E058 0.1515154 0.0425469882 1.000000e+00   12 88118744 88119020 277 - 0.057 0.000 -10.511
ENSG00000198707 E059 0.7384352 0.0197136227 4.486329e-01 5.899119e-01 12 88119021 88119150 130 - 0.232 0.000 -12.832
ENSG00000198707 E060 0.8900644 0.0528911910 3.587368e-01 5.031166e-01 12 88119151 88120113 963 - 0.267 0.000 -13.096
ENSG00000198707 E061 10.1915260 0.0016915644 2.576725e-06 1.957937e-05 12 88120114 88120117 4 - 1.031 0.000 -16.619
ENSG00000198707 E062 23.1781911 0.0008565928 1.448235e-05 9.268422e-05 12 88120118 88120276 159 - 1.338 0.796 -1.983
ENSG00000198707 E063 18.4784358 0.0009850425 2.323960e-03 8.225144e-03 12 88120997 88121166 170 - 1.233 0.845 -1.424
ENSG00000198707 E064 16.6229807 0.1146117313 1.273534e-02 3.529001e-02 12 88125246 88125369 124 - 1.204 0.679 -1.991
ENSG00000198707 E065 16.2709602 0.0011432786 6.151238e-05 3.389371e-04 12 88126316 88126438 123 - 1.199 0.602 -2.305
ENSG00000198707 E066 17.4078972 0.0036618896 1.451948e-02 3.940904e-02 12 88128946 88129035 90 - 1.203 0.890 -1.147
ENSG00000198707 E067 19.6887695 0.0011057948 2.748696e-03 9.517037e-03 12 88129694 88129876 183 - 1.257 0.889 -1.340
ENSG00000198707 E068 18.5405153 0.0009646802 1.665889e-04 8.205226e-04 12 88130268 88130420 153 - 1.247 0.740 -1.889
ENSG00000198707 E069 0.2924217 0.0275923545 1.000000e+00   12 88130421 88130544 124 - 0.108 0.000 -11.510
ENSG00000198707 E070 9.6034604 0.0017224768 1.104545e-04 5.700465e-04 12 88130545 88130565 21 - 1.002 0.243 -3.591
ENSG00000198707 E071 0.8794552 0.0542458908 3.578919e-01 5.023118e-01 12 88130566 88130717 152 - 0.266 0.000 -13.094
ENSG00000198707 E072 0.5870335 0.1254533327 6.522736e-01 7.629882e-01 12 88130718 88131164 447 - 0.194 0.000 -12.509
ENSG00000198707 E073 13.8663478 0.0012744883 5.475100e-04 2.337656e-03 12 88131165 88131218 54 - 1.133 0.602 -2.067
ENSG00000198707 E074 1.4769841 0.0089851523 1.343970e-01 2.402671e-01 12 88131219 88132999 1781 - 0.382 0.000 -13.832
ENSG00000198707 E075 1.3306629 0.0108966925 2.495083e-02 6.177063e-02 12 88135853 88136453 601 - 0.194 0.602 2.409
ENSG00000198707 E076 0.2955422 0.0335723080 2.200276e-01   12 88136454 88136455 2 - 0.057 0.243 2.406
ENSG00000198707 E077 1.4863456 0.2416872493 3.882665e-01 5.323750e-01 12 88136456 88136642 187 - 0.299 0.502 1.134
ENSG00000198707 E078 11.9295189 0.0014627656 1.055597e-02 3.010519e-02 12 88136643 88136646 4 - 1.064 0.677 -1.498
ENSG00000198707 E079 25.9828686 0.0007401080 1.779510e-04 8.693212e-04 12 88136647 88136786 140 - 1.381 0.966 -1.481
ENSG00000198707 E080 15.4303142 0.0011077727 6.189974e-04 2.603106e-03 12 88139145 88139191 47 - 1.171 0.677 -1.884
ENSG00000198707 E081 14.9031190 0.0019294922 2.710041e-02 6.619680e-02 12 88139495 88139564 70 - 1.142 0.845 -1.099
ENSG00000198707 E082 13.6339668 0.0015213186 2.869376e-03 9.881024e-03 12 88140956 88141033 78 - 1.119 0.677 -1.696
ENSG00000198707 E083 17.6457561 0.0010275239 2.410536e-02 6.002955e-02 12 88141206 88141334 129 - 1.207 0.929 -1.011
ENSG00000198707 E084 0.1515154 0.0425469882 1.000000e+00   12 88141335 88141617 283 - 0.057 0.000 -10.511
ENSG00000198707 E085 0.2924217 0.0275923545 1.000000e+00   12 88141618 88141899 282 - 0.108 0.000 -11.510
ENSG00000198707 E086 13.4686029 0.0012946021 2.564843e-01 3.934491e-01 12 88141900 88142099 200 - 1.080 0.929 -0.554