ENSG00000198589

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000509835 ENSG00000198589 HEK293_OSMI2_2hA HEK293_TMG_2hB LRBA protein_coding protein_coding 13.24218 9.287955 17.92556 1.228461 0.4451949 0.9478375 3.624739 2.310168 5.075850 0.3256207 0.3136058 1.132260 0.2749000 0.2504000 0.2843000 0.03390000 7.184303e-01 8.109017e-42 FALSE TRUE
ENST00000510157 ENSG00000198589 HEK293_OSMI2_2hA HEK293_TMG_2hB LRBA protein_coding retained_intron 13.24218 9.287955 17.92556 1.228461 0.4451949 0.9478375 1.270675 2.747609 0.000000 0.4541533 0.0000000 -8.107274 0.1426875 0.2948000 0.0000000 -0.29480000 8.109017e-42 8.109017e-42 FALSE TRUE
ENST00000648878 ENSG00000198589 HEK293_OSMI2_2hA HEK293_TMG_2hB LRBA protein_coding protein_coding 13.24218 9.287955 17.92556 1.228461 0.4451949 0.9478375 1.117121 2.499974 0.000000 0.1394439 0.0000000 -7.971529 0.1146125 0.2756667 0.0000000 -0.27566667 1.074471e-37 8.109017e-42 FALSE TRUE
ENST00000651943 ENSG00000198589 HEK293_OSMI2_2hA HEK293_TMG_2hB LRBA protein_coding protein_coding 13.24218 9.287955 17.92556 1.228461 0.4451949 0.9478375 2.120998 1.037015 3.004631 0.1944724 0.4797671 1.525700 0.1535292 0.1126000 0.1666333 0.05403333 3.643000e-01 8.109017e-42 FALSE TRUE
MSTRG.25594.11 ENSG00000198589 HEK293_OSMI2_2hA HEK293_TMG_2hB LRBA protein_coding   13.24218 9.287955 17.92556 1.228461 0.4451949 0.9478375 2.020305 0.000000 3.396900 0.0000000 0.4396600 8.412316 0.1157167 0.0000000 0.1900333 0.19003333 2.089394e-18 8.109017e-42 FALSE TRUE
MSTRG.25594.7 ENSG00000198589 HEK293_OSMI2_2hA HEK293_TMG_2hB LRBA protein_coding   13.24218 9.287955 17.92556 1.228461 0.4451949 0.9478375 1.176193 0.000000 3.209743 0.0000000 0.4885941 8.330802 0.0672875 0.0000000 0.1788000 0.17880000 3.634601e-16 8.109017e-42 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000198589 E001 5.8760096 0.0459400275 1.008659e-03 3.988299e-03 4 150264435 150264530 96 - 0.576 1.135 2.196
ENSG00000198589 E002 22.1328944 0.0010447336 1.069978e-13 3.027694e-12 4 150264531 150264658 128 - 1.075 1.672 2.078
ENSG00000198589 E003 14.9323349 0.0020958794 1.449825e-11 2.940739e-10 4 150264659 150264660 2 - 0.888 1.532 2.295
ENSG00000198589 E004 16.4382723 0.0115431954 6.528971e-10 1.002670e-08 4 150264661 150264664 4 - 0.925 1.573 2.293
ENSG00000198589 E005 16.1071289 0.0117091652 8.076041e-10 1.218721e-08 4 150264665 150264667 3 - 0.916 1.565 2.303
ENSG00000198589 E006 19.1568687 0.0012896888 1.613026e-14 5.162748e-13 4 150264668 150264688 21 - 0.984 1.636 2.291
ENSG00000198589 E007 23.6414788 0.0167747333 2.908895e-07 2.699394e-06 4 150264689 150264696 8 - 1.134 1.670 1.861
ENSG00000198589 E008 92.5771297 0.0089340987 2.128392e-26 2.614900e-24 4 150264697 150264852 156 - 1.628 2.300 2.262
ENSG00000198589 E009 137.3187636 0.0207596700 1.542168e-15 5.689024e-14 4 150264853 150265025 173 - 1.806 2.460 2.191
ENSG00000198589 E010 252.4798637 0.0101150474 8.788217e-20 5.440854e-18 4 150265026 150265565 540 - 2.145 2.666 1.740
ENSG00000198589 E011 132.9486012 0.0045591211 1.192480e-12 2.891485e-11 4 150265566 150265812 247 - 1.944 2.312 1.233
ENSG00000198589 E012 0.3697384 0.0260613209 3.155443e-02 7.498703e-02 4 150266399 150266441 43 - 0.000 0.348 14.275
ENSG00000198589 E013 116.8665991 0.0003014814 4.914635e-14 1.460033e-12 4 150277853 150278004 152 - 1.915 2.228 1.049
ENSG00000198589 E014 134.5453268 0.0026192369 6.379435e-10 9.816154e-09 4 150282450 150282646 197 - 1.980 2.280 1.006
ENSG00000198589 E015 86.1684515 0.0019342498 2.907531e-09 3.957062e-08 4 150285933 150286034 102 - 1.781 2.097 1.062
ENSG00000198589 E016 40.5339554 0.0021756739 3.676496e-05 2.137818e-04 4 150302625 150302627 3 - 1.465 1.768 1.032
ENSG00000198589 E017 120.8831306 0.0002933867 5.737652e-09 7.411066e-08 4 150302628 150302792 165 - 1.950 2.204 0.850
ENSG00000198589 E018 134.2394515 0.0002445310 3.042421e-04 1.396602e-03 4 150310229 150310384 156 - 2.023 2.197 0.582
ENSG00000198589 E019 3.9306101 0.0077507261 5.489128e-01 6.787274e-01 4 150310385 150311369 985 - 0.665 0.609 -0.244
ENSG00000198589 E020 1.1771729 0.1756682078 7.556279e-01 8.409049e-01 4 150314723 150315560 838 - 0.270 0.353 0.543
ENSG00000198589 E021 82.9701950 0.0003157828 1.576416e-02 4.220327e-02 4 150315561 150315610 50 - 1.821 1.977 0.524
ENSG00000198589 E022 56.0217914 0.0004235552 1.091744e-02 3.096316e-02 4 150315611 150315623 13 - 1.645 1.828 0.618
ENSG00000198589 E023 0.2214452 0.0811236161 1.445198e-01   4 150315624 150315634 11 - 0.000 0.209 12.789
ENSG00000198589 E024 136.6968987 0.0019263892 9.694629e-02 1.858192e-01 4 150321191 150321368 178 - 2.050 2.168 0.395
ENSG00000198589 E025 13.3253848 0.0301213723 5.755959e-01 7.011633e-01 4 150321369 150321383 15 - 1.069 1.194 0.451
ENSG00000198589 E026 85.2215676 0.0110796843 9.447902e-01 9.693249e-01 4 150325809 150325898 90 - 1.867 1.919 0.175
ENSG00000198589 E027 79.7757253 0.0067141453 5.069568e-01 6.425896e-01 4 150349992 150350090 99 - 1.827 1.917 0.304
ENSG00000198589 E028 56.8175925 0.0095752262 5.033093e-01 6.392708e-01 4 150350091 150350159 69 - 1.678 1.772 0.321
ENSG00000198589 E029 0.1472490 0.0446334187 1.000000e+00   4 150353731 150353924 194 - 0.069 0.000 -11.019
ENSG00000198589 E030 71.8767753 0.0081396494 7.920407e-02 1.582419e-01 4 150415438 150415590 153 - 1.758 1.921 0.550
ENSG00000198589 E031 78.4375097 0.0009646304 7.720882e-01 8.529000e-01 4 150435589 150435708 120 - 1.826 1.893 0.227
ENSG00000198589 E032 94.4037686 0.0003113808 2.119826e-01 3.408513e-01 4 150436724 150436864 141 - 1.922 1.923 0.004
ENSG00000198589 E033 83.4375199 0.0003065020 2.390432e-02 5.960804e-02 4 150467673 150467785 113 - 1.880 1.832 -0.165
ENSG00000198589 E034 79.1454046 0.0003472726 1.436484e-02 3.905649e-02 4 150471624 150471739 116 - 1.860 1.799 -0.207
ENSG00000198589 E035 76.2301057 0.0003651893 4.743747e-04 2.062206e-03 4 150487732 150487834 103 - 1.857 1.740 -0.395
ENSG00000198589 E036 50.0153697 0.0007685334 2.044512e-02 5.242717e-02 4 150490918 150490956 39 - 1.670 1.584 -0.291
ENSG00000198589 E037 73.3181969 0.0019663522 2.123924e-01 3.413483e-01 4 150490957 150491035 79 - 1.816 1.803 -0.043
ENSG00000198589 E038 0.0000000       4 150581318 150581722 405 -      
ENSG00000198589 E039 0.5911836 0.2100475499 1.185915e-02 3.319417e-02 4 150582506 150583996 1491 - 0.000 0.458 13.782
ENSG00000198589 E040 82.4757471 0.0008092858 3.586019e-01 5.030027e-01 4 150588048 150588184 137 - 1.861 1.873 0.038
ENSG00000198589 E041 84.0336048 0.0003614120 5.149511e-01 6.496713e-01 4 150590713 150590859 147 - 1.865 1.890 0.083
ENSG00000198589 E042 4.6633679 0.0241434195 5.488034e-01 6.786233e-01 4 150597083 150597115 33 - 0.725 0.669 -0.233
ENSG00000198589 E043 75.1836505 0.0012616967 2.722652e-01 4.111245e-01 4 150599007 150599131 125 - 1.825 1.823 -0.004
ENSG00000198589 E044 0.1472490 0.0446334187 1.000000e+00   4 150679588 150679667 80 - 0.069 0.000 -11.019
ENSG00000198589 E045 51.6868005 0.0053704317 9.022626e-01 9.417307e-01 4 150683551 150683602 52 - 1.655 1.698 0.147
ENSG00000198589 E046 74.8831940 0.0005362043 8.114111e-03 2.407282e-02 4 150683603 150683717 115 - 1.840 1.764 -0.258
ENSG00000198589 E047 0.6256415 0.0175430604 1.000000e+00 1.000000e+00 4 150683845 150683963 119 - 0.181 0.208 0.244
ENSG00000198589 E048 82.5194286 0.0003811229 2.603803e-05 1.572251e-04 4 150735258 150735366 109 - 1.897 1.750 -0.497
ENSG00000198589 E049 64.9257259 0.0052621620 7.301959e-03 2.200519e-02 4 150761783 150761847 65 - 1.787 1.667 -0.406
ENSG00000198589 E050 0.2903454 0.3659168756 1.000000e+00   4 150798077 150798080 4 - 0.128 0.000 -11.336
ENSG00000198589 E051 53.9462460 0.0121588456 3.056937e-02 7.308583e-02 4 150798081 150798142 62 - 1.708 1.586 -0.418
ENSG00000198589 E052 78.4475639 0.0059738249 2.005934e-03 7.244514e-03 4 150806271 150806404 134 - 1.872 1.731 -0.474
ENSG00000198589 E053 59.5935294 0.0034771064 7.828864e-03 2.335141e-02 4 150808320 150808398 79 - 1.749 1.637 -0.381
ENSG00000198589 E054 73.6527534 0.0004763340 6.424347e-02 1.337732e-01 4 150817124 150817257 134 - 1.826 1.790 -0.120
ENSG00000198589 E055 147.0361333 0.0047450408 4.839065e-06 3.457593e-05 4 150828180 150828621 442 - 2.150 1.978 -0.578
ENSG00000198589 E056 67.5408843 0.0177731841 2.295279e-04 1.090055e-03 4 150831817 150831976 160 - 1.830 1.559 -0.918
ENSG00000198589 E057 0.0000000       4 150840540 150841053 514 -      
ENSG00000198589 E058 58.7047567 0.0004301776 2.125892e-06 1.643853e-05 4 150844100 150844207 108 - 1.763 1.541 -0.756
ENSG00000198589 E059 61.8526502 0.0021666152 6.849451e-04 2.844072e-03 4 150844658 150844779 122 - 1.772 1.624 -0.502
ENSG00000198589 E060 74.9457564 0.0008985313 7.122856e-08 7.439650e-07 4 150848818 150848998 181 - 1.870 1.637 -0.791
ENSG00000198589 E061 64.0349476 0.0011243975 9.844330e-04 3.905878e-03 4 150849422 150849575 154 - 1.784 1.655 -0.436
ENSG00000198589 E062 69.6549400 0.0003843677 1.507093e-09 2.161514e-08 4 150850724 150850902 179 - 1.848 1.570 -0.940
ENSG00000198589 E063 209.8369145 0.0002265468 2.323065e-32 4.622874e-30 4 150851885 150852943 1059 - 2.329 1.993 -1.122
ENSG00000198589 E064 51.0836579 0.0004887889 1.937364e-12 4.530089e-11 4 150867671 150867863 193 - 1.732 1.301 -1.479
ENSG00000198589 E065 45.5920562 0.0204774268 1.151518e-03 4.476560e-03 4 150868182 150868305 124 - 1.662 1.398 -0.904
ENSG00000198589 E066 40.0685482 0.0007330634 1.572898e-05 9.990081e-05 4 150870525 150870606 82 - 1.606 1.352 -0.875
ENSG00000198589 E067 41.1310184 0.0007408274 1.108512e-05 7.290043e-05 4 150871345 150871453 109 - 1.619 1.363 -0.878
ENSG00000198589 E068 38.2358217 0.0005265866 1.856526e-08 2.178196e-07 4 150872663 150872755 93 - 1.606 1.229 -1.304
ENSG00000198589 E069 42.4034070 0.0005159139 4.330940e-09 5.704934e-08 4 150893052 150893149 98 - 1.648 1.274 -1.291
ENSG00000198589 E070 42.1298542 0.0005168097 4.388717e-12 9.679036e-11 4 150896394 150896456 63 - 1.658 1.179 -1.659
ENSG00000198589 E071 43.0642604 0.0006249762 2.438630e-10 4.024314e-09 4 150897739 150897818 80 - 1.660 1.245 -1.433
ENSG00000198589 E072 56.8276539 0.0004383231 1.126692e-06 9.253165e-06 4 150900049 150900217 169 - 1.753 1.517 -0.802
ENSG00000198589 E073 44.6892761 0.0004976545 2.199137e-04 1.049209e-03 4 150905838 150905990 153 - 1.643 1.456 -0.640
ENSG00000198589 E074 37.7539035 0.0007799526 2.547425e-06 1.937519e-05 4 150906297 150906405 109 - 1.587 1.288 -1.032
ENSG00000198589 E075 44.1690827 0.0076103361 1.829219e-09 2.580919e-08 4 150908334 150908467 134 - 1.677 1.197 -1.659
ENSG00000198589 E076 57.0489304 0.0005796429 3.591630e-15 1.262147e-13 4 150908660 150908857 198 - 1.786 1.314 -1.615
ENSG00000198589 E077 43.1902572 0.0004858516 5.157272e-10 8.052664e-09 4 150914195 150914341 147 - 1.660 1.259 -1.381
ENSG00000198589 E078 45.6355097 0.0243341490 1.052319e-04 5.461888e-04 4 150915608 150915727 120 - 1.676 1.328 -1.195
ENSG00000198589 E079 42.6595612 0.0006794523 3.090546e-08 3.467954e-07 4 150916401 150916527 127 - 1.647 1.301 -1.189
ENSG00000198589 E080 29.3650352 0.0044336607 1.637787e-04 8.082574e-04 4 150916617 150916738 122 - 1.480 1.197 -0.986
ENSG00000198589 E081 25.0571719 0.0015702888 2.449958e-05 1.489576e-04 4 150921198 150921293 96 - 1.421 1.081 -1.200
ENSG00000198589 E082 34.7831177 0.0015421258 7.034930e-11 1.273771e-09 4 150928516 150928616 101 - 1.579 1.058 -1.825
ENSG00000198589 E083 61.2400928 0.0008182802 1.754888e-16 7.326096e-15 4 150928834 150929065 232 - 1.817 1.327 -1.673
ENSG00000198589 E084 0.0000000       4 151012805 151012828 24 -      
ENSG00000198589 E085 0.4449813 0.0215072299 7.095315e-01 8.068836e-01 4 151012829 151014426 1598 - 0.129 0.208 0.827
ENSG00000198589 E086 92.5109938 0.0006197150 2.564429e-27 3.418884e-25 4 151014427 151014861 435 - 1.998 1.447 -1.869
ENSG00000198589 E087 16.5564779 0.0012079448 3.469387e-03 1.163713e-02 4 151015202 151015330 129 - 1.241 0.982 -0.934
ENSG00000198589 E088 16.9867781 0.0076643520 1.759750e-06 1.385617e-05 4 151015473 151015727 255 - 1.289 0.724 -2.105