ENSG00000197969

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000471439 ENSG00000197969 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS13A protein_coding processed_transcript 5.627647 1.304071 8.533846 0.09812287 0.2115498 2.700843 0.3253211 0.06411606 0.5174917 0.03323990 0.14267663 2.8312903 0.0639250 0.05263333 0.06026667 0.007633333 9.088043e-01 3.930472e-09   FALSE
ENST00000484581 ENSG00000197969 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS13A protein_coding processed_transcript 5.627647 1.304071 8.533846 0.09812287 0.2115498 2.700843 0.7271749 0.58858120 1.0795210 0.04510585 0.07715159 0.8640752 0.2160167 0.45370000 0.12630000 -0.327400000 3.930472e-09 3.930472e-09 FALSE FALSE
ENST00000643348 ENSG00000197969 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS13A protein_coding protein_coding 5.627647 1.304071 8.533846 0.09812287 0.2115498 2.700843 0.6810806 0.31222602 1.3664202 0.04328415 0.08086708 2.0947760 0.1422292 0.23840000 0.15986667 -0.078533333 2.503706e-01 3.930472e-09 FALSE TRUE
ENST00000645632 ENSG00000197969 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS13A protein_coding protein_coding 5.627647 1.304071 8.533846 0.09812287 0.2115498 2.700843 1.3948485 0.16183177 2.8442317 0.04292611 0.23216595 4.0540337 0.2004625 0.12126667 0.33286667 0.211600000 2.066607e-03 3.930472e-09 FALSE TRUE
MSTRG.32893.2 ENSG00000197969 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS13A protein_coding   5.627647 1.304071 8.533846 0.09812287 0.2115498 2.700843 1.0190512 0.00000000 1.2646665 0.00000000 0.07211844 6.9939761 0.1059208 0.00000000 0.14870000 0.148700000 5.838946e-06 3.930472e-09 TRUE TRUE
MSTRG.32893.7 ENSG00000197969 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS13A protein_coding   5.627647 1.304071 8.533846 0.09812287 0.2115498 2.700843 0.7441100 0.12600241 0.8329843 0.03751116 0.07417604 2.6318735 0.1353083 0.09360000 0.09813333 0.004533333 9.101153e-01 3.930472e-09 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000197969 E001 0.3030308 0.3532187363 1.000000e+00   9 77177445 77177533 89 + 0.087 0.000 -9.263
ENSG00000197969 E002 0.1515154 0.0426069619 7.020271e-01   9 77177534 77177535 2 + 0.045 0.000 -8.058
ENSG00000197969 E003 11.9584230 0.0059134626 7.970416e-01 8.704977e-01 9 77177536 77177804 269 + 0.940 0.940 -0.001
ENSG00000197969 E004 9.7280170 0.0017256116 3.693455e-01 5.137665e-01 9 77199945 77199988 44 + 0.875 0.764 -0.434
ENSG00000197969 E005 9.3603550 0.0017617294 7.834137e-02 1.568160e-01 9 77201365 77201407 43 + 0.875 0.589 -1.171
ENSG00000197969 E006 11.0641094 0.0015820187 8.392114e-02 1.656855e-01 9 77205313 77205408 96 + 0.940 0.685 -1.003
ENSG00000197969 E007 13.3552095 0.0016563895 2.323748e-02 5.824034e-02 9 77205978 77206079 102 + 1.020 0.685 -1.300
ENSG00000197969 E008 12.4440287 0.0246128848 5.231703e-03 1.656246e-02 9 77209423 77209487 65 + 1.001 0.466 -2.228
ENSG00000197969 E009 9.3212690 0.0119022048 4.043915e-03 1.326501e-02 9 77209488 77209532 45 + 0.893 0.293 -2.827
ENSG00000197969 E010 11.7200311 0.0014655610 5.081041e-04 2.190289e-03 9 77210616 77210675 60 + 0.982 0.293 -3.159
ENSG00000197969 E011 4.5092125 0.0034015932 8.344242e-01 8.963537e-01 9 77211213 77211617 405 + 0.599 0.589 -0.044
ENSG00000197969 E012 5.2217252 0.0030200030 2.636487e-01 4.015655e-01 9 77212790 77212968 179 + 0.666 0.466 -0.918
ENSG00000197969 E013 14.6168662 0.0063628011 3.825525e-03 1.265204e-02 9 77212969 77213028 60 + 1.059 0.589 -1.858
ENSG00000197969 E014 14.6873903 0.0259250129 1.780737e-03 6.538398e-03 9 77213234 77213314 81 + 1.064 0.467 -2.455
ENSG00000197969 E015 16.4324548 0.0157867946 8.163868e-03 2.419770e-02 9 77214329 77214386 58 + 1.099 0.687 -1.582
ENSG00000197969 E016 20.9751792 0.0109679777 1.777418e-02 4.665218e-02 9 77219954 77220081 128 + 1.191 0.890 -1.106
ENSG00000197969 E017 16.7972890 0.0102527364 5.376442e-03 1.695211e-02 9 77220277 77220383 107 + 1.111 0.686 -1.628
ENSG00000197969 E018 22.8513417 0.0017038033 3.550404e-04 1.599785e-03 9 77221185 77221356 172 + 1.238 0.764 -1.761
ENSG00000197969 E019 11.2542209 0.0015382063 2.531433e-02 6.252248e-02 9 77225926 77225988 63 + 0.951 0.589 -1.458
ENSG00000197969 E020 19.3293004 0.0009112178 8.557329e-03 2.518268e-02 9 77226466 77226598 133 + 1.163 0.831 -1.231
ENSG00000197969 E021 16.7685275 0.0085784758 4.017702e-02 9.136806e-02 9 77227391 77227485 95 + 1.103 0.831 -1.014
ENSG00000197969 E022 21.8304069 0.0071186155 3.343629e-03 1.127259e-02 9 77228122 77228264 143 + 1.215 0.831 -1.415
ENSG00000197969 E023 16.2614838 0.0010686725 1.029193e-03 4.059071e-03 9 77238002 77238191 190 + 1.103 0.589 -2.016
ENSG00000197969 E024 14.6160219 0.0017434873 2.447452e-06 1.867874e-05 9 77238272 77238386 115 + 1.076 0.000 -14.686
ENSG00000197969 E025 16.7518302 0.0092730042 1.136140e-03 4.424837e-03 9 77247259 77247395 137 + 1.117 0.589 -2.070
ENSG00000197969 E026 18.7137770 0.0013081263 9.579470e-04 3.814612e-03 9 77250097 77250229 133 + 1.159 0.685 -1.804
ENSG00000197969 E027 19.2625824 0.0009078145 1.470589e-06 1.178206e-05 9 77252235 77252352 118 + 1.182 0.293 -3.885
ENSG00000197969 E028 19.0285859 0.0074908374 1.290316e-03 4.943707e-03 9 77260086 77260224 139 + 1.163 0.686 -1.815
ENSG00000197969 E029 12.4735246 0.0172489405 1.802322e-02 4.718236e-02 9 77273280 77273364 85 + 0.991 0.591 -1.604
ENSG00000197969 E030 20.4470285 0.0008782091 3.300888e-04 1.501172e-03 9 77275498 77275652 155 + 1.194 0.685 -1.929
ENSG00000197969 E031 22.8587166 0.0018578294 8.070598e-05 4.312613e-04 9 77276065 77276221 157 + 1.241 0.686 -2.093
ENSG00000197969 E032 0.0000000       9 77279846 77279959 114 +      
ENSG00000197969 E033 15.3694674 0.0011631330 6.495916e-02 1.349688e-01 9 77280159 77280238 80 + 1.063 0.831 -0.873
ENSG00000197969 E034 14.2378975 0.0017060323 1.060173e-01 1.996384e-01 9 77281867 77281926 60 + 1.033 0.831 -0.764
ENSG00000197969 E035 24.0000207 0.0014850739 6.402239e-04 2.681120e-03 9 77282121 77282274 154 + 1.257 0.831 -1.564
ENSG00000197969 E036 19.3835380 0.0010300076 8.616435e-03 2.532829e-02 9 77283355 77283471 117 + 1.163 0.831 -1.231
ENSG00000197969 E037 15.0940731 0.0012650397 9.774937e-03 2.820894e-02 9 77283547 77283650 104 + 1.063 0.686 -1.458
ENSG00000197969 E038 13.4819312 0.0012678537 1.551132e-01 2.685551e-01 9 77293341 77293493 153 + 1.006 0.831 -0.663
ENSG00000197969 E039 6.5462609 0.0024731124 6.879967e-01 7.902153e-01 9 77293494 77293508 15 + 0.724 0.686 -0.159
ENSG00000197969 E040 26.5818450 0.0007129988 4.373580e-03 1.418721e-02 9 77295542 77295846 305 + 1.290 0.985 -1.096
ENSG00000197969 E041 23.5011248 0.0007965181 8.119902e-02 1.614173e-01 9 77302915 77303062 148 + 1.230 1.064 -0.594
ENSG00000197969 E042 0.0000000       9 77305557 77305637 81 +      
ENSG00000197969 E043 23.7909692 0.0097689331 5.240139e-02 1.134352e-01 9 77307945 77308098 154 + 1.238 1.026 -0.761
ENSG00000197969 E044 23.9464661 0.0009405473 6.168042e-07 5.358941e-06 9 77313992 77314119 128 + 1.267 0.466 -3.186
ENSG00000197969 E045 22.7481565 0.0018083294 2.834538e-02 6.869575e-02 9 77314495 77314664 170 + 1.221 0.985 -0.853
ENSG00000197969 E046 20.4575403 0.0410458409 3.870404e-01 5.311893e-01 9 77315253 77315470 218 + 1.165 1.070 -0.342
ENSG00000197969 E047 30.9370368 0.0020190072 1.845245e-04 8.972233e-04 9 77316174 77316406 233 + 1.358 0.940 -1.501
ENSG00000197969 E048 22.5971059 0.0010420550 6.402521e-02 1.333940e-01 9 77317606 77317698 93 + 1.212 1.026 -0.670
ENSG00000197969 E049 41.1746264 0.0110779319 8.931880e-04 3.590244e-03 9 77318235 77318520 286 + 1.474 1.131 -1.201
ENSG00000197969 E050 20.3567622 0.0054791817 6.370533e-03 1.958582e-02 9 77318521 77318591 71 + 1.185 0.831 -1.312
ENSG00000197969 E051 20.3995244 0.0172247680 1.033839e-02 2.960184e-02 9 77319572 77319673 102 + 1.189 0.829 -1.329
ENSG00000197969 E052 25.3857184 0.0007548411 3.594559e-02 8.347788e-02 9 77321169 77321327 159 + 1.267 1.064 -0.727
ENSG00000197969 E053 34.7094265 0.0006853324 7.350360e-03 2.212890e-02 9 77321491 77321746 256 + 1.396 1.160 -0.828
ENSG00000197969 E054 30.6117721 0.0008153862 1.570622e-03 5.863738e-03 9 77323067 77323227 161 + 1.350 1.026 -1.151
ENSG00000197969 E055 25.9667119 0.0007139411 2.197641e-03 7.834883e-03 9 77332010 77332113 104 + 1.283 0.939 -1.240
ENSG00000197969 E056 32.2895755 0.0007047601 2.064303e-02 5.283239e-02 9 77337255 77337537 283 + 1.362 1.160 -0.710
ENSG00000197969 E057 6.9476954 0.0186319591 1.891082e-02 4.913726e-02 9 77337538 77339182 1645 + 0.676 1.063 1.499
ENSG00000197969 E058 18.4689977 0.0010087235 1.584121e-01 2.730107e-01 9 77339516 77339582 67 + 1.129 0.985 -0.524
ENSG00000197969 E059 47.1327059 0.0062130511 4.037568e-02 9.170645e-02 9 77339583 77339911 329 + 1.517 1.365 -0.524
ENSG00000197969 E060 13.2397682 0.0013546024 6.468272e-01 7.586315e-01 9 77340178 77340200 23 + 0.967 1.064 0.358
ENSG00000197969 E061 23.5022893 0.0008158531 6.368863e-01 7.508398e-01 9 77340201 77340282 82 + 1.197 1.285 0.309
ENSG00000197969 E062 30.2520591 0.0023629083 1.484780e-01 2.596050e-01 9 77340404 77340550 147 + 1.325 1.215 -0.388
ENSG00000197969 E063 0.4439371 0.0215649465 1.000000e+00 1.000000e+00 9 77340551 77340711 161 + 0.124 0.000 -9.643
ENSG00000197969 E064 28.2871201 0.0008597308 5.050647e-02 1.100594e-01 9 77344153 77344281 129 + 1.305 1.130 -0.616
ENSG00000197969 E065 35.5134865 0.0005847514 3.908727e-02 8.935252e-02 9 77345009 77345142 134 + 1.400 1.239 -0.561
ENSG00000197969 E066 0.2987644 0.0272359771 1.000000e+00   9 77350917 77351316 400 + 0.086 0.000 -9.058
ENSG00000197969 E067 34.7231440 0.0006120083 4.732204e-01 6.122183e-01 9 77351317 77351446 130 + 1.360 1.461 0.348
ENSG00000197969 E068 50.0599387 0.0004768274 2.051714e-01 3.326325e-01 9 77353409 77353641 233 + 1.507 1.637 0.442
ENSG00000197969 E069 31.1433860 0.0006513081 7.783233e-01 8.573487e-01 9 77356714 77356867 154 + 1.316 1.382 0.228
ENSG00000197969 E070 27.0290578 0.0025732416 9.469484e-01 9.706870e-01 9 77357692 77357838 147 + 1.260 1.307 0.165
ENSG00000197969 E071 21.1679877 0.0289732019 9.157326e-01 9.507156e-01 9 77358357 77358438 82 + 1.157 1.222 0.231
ENSG00000197969 E072 23.2450310 0.0008212876 5.793650e-01 7.042828e-01 9 77359333 77359402 70 + 1.209 1.188 -0.075
ENSG00000197969 E073 21.2223765 0.0009184779 5.415035e-01 6.724779e-01 9 77360536 77360641 106 + 1.159 1.263 0.366
ENSG00000197969 E074 23.2375517 0.0007992206 3.216055e-01 4.648660e-01 9 77365460 77365573 114 + 1.188 1.326 0.486
ENSG00000197969 E075 41.3202073 0.0005357016 6.265704e-01 7.425061e-01 9 77366727 77366872 146 + 1.436 1.515 0.270
ENSG00000197969 E076 35.9984129 0.0019235675 3.776341e-01 5.219491e-01 9 77368055 77368136 82 + 1.374 1.489 0.394
ENSG00000197969 E077 39.8742979 0.0053395139 5.020555e-01 6.381630e-01 9 77369299 77369412 114 + 1.436 1.415 -0.075
ENSG00000197969 E078 33.8872039 0.0007793553 2.989093e-01 4.403894e-01 9 77370257 77370332 76 + 1.347 1.475 0.441
ENSG00000197969 E079 52.6930669 0.0004640144 7.001009e-01 7.996432e-01 9 77370415 77370578 164 + 1.539 1.607 0.232
ENSG00000197969 E080 31.5685529 0.0006459478 5.682796e-02 1.211624e-01 9 77370890 77370935 46 + 1.302 1.502 0.692
ENSG00000197969 E081 44.0613220 0.0005860380 2.281293e-04 1.083766e-03 9 77371026 77371149 124 + 1.422 1.716 1.003
ENSG00000197969 E082 36.4132876 0.0006503834 2.932458e-06 2.199048e-05 9 77381976 77382087 112 + 1.321 1.700 1.300
ENSG00000197969 E083 44.9483240 0.0005618388 9.168143e-02 1.777602e-01 9 77382279 77383006 728 + 1.454 1.617 0.559
ENSG00000197969 E084 36.5501026 0.0394167714 2.247826e-10 3.730563e-09 9 77384585 77385191 607 + 1.195 1.961 2.624
ENSG00000197969 E085 5.8127950 0.0166590519 7.181106e-01 8.133046e-01 9 77389711 77389994 284 + 0.666 0.764 0.404
ENSG00000197969 E086 5.6947002 0.0029990617 6.856777e-03 2.085333e-02 9 77389995 77390142 148 + 0.587 1.026 1.748
ENSG00000197969 E087 0.0000000       9 77395710 77395868 159 +      
ENSG00000197969 E088 22.3806113 0.0016987278 3.574946e-04 1.609082e-03 9 77403236 77403321 86 + 1.121 1.489 1.288
ENSG00000197969 E089 23.1028001 0.0013951494 2.541520e-04 1.192469e-03 9 77405864 77405967 104 + 1.132 1.503 1.295
ENSG00000197969 E090 13.1781491 0.0015730093 2.740880e-03 9.494625e-03 9 77405968 77405987 20 + 0.906 1.285 1.375
ENSG00000197969 E091 22.0313611 0.0008660469 1.508348e-05 9.623872e-05 9 77407533 77407607 75 + 1.103 1.528 1.486
ENSG00000197969 E092 0.0000000       9 77407608 77407659 52 +      
ENSG00000197969 E093 27.5058331 0.0010313056 1.176825e-07 1.179921e-06 9 77415956 77416179 224 + 1.185 1.646 1.597
ENSG00000197969 E094 187.9069040 0.0058722216 3.837570e-31 6.963756e-29 9 77416180 77421537 5358 + 1.977 2.519 1.812
ENSG00000197969 E095 0.0000000       9 77436464 77436501 38 +