ENSG00000197563

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000400334 ENSG00000197563 HEK293_OSMI2_2hA HEK293_TMG_2hB PIGN protein_coding protein_coding 8.485111 2.658642 11.81942 0.7427154 0.3593127 2.148202 1.24756914 0.00000000 1.8553361 0.00000000 0.21551317 7.54329182 0.096154167 0.00000000 0.15613333 0.15613333 4.142106e-10 4.142106e-10 FALSE TRUE
ENST00000638167 ENSG00000197563 HEK293_OSMI2_2hA HEK293_TMG_2hB PIGN protein_coding protein_coding 8.485111 2.658642 11.81942 0.7427154 0.3593127 2.148202 0.18798038 0.43660497 0.0000000 0.25367113 0.00000000 -5.48092740 0.055891667 0.15606667 0.00000000 -0.15606667 2.832209e-02 4.142106e-10 FALSE TRUE
ENST00000638183 ENSG00000197563 HEK293_OSMI2_2hA HEK293_TMG_2hB PIGN protein_coding protein_coding 8.485111 2.658642 11.81942 0.7427154 0.3593127 2.148202 1.39258350 0.23116191 2.0342313 0.05009641 0.07758725 3.08348446 0.191479167 0.10963333 0.17243333 0.06280000 4.110000e-01 4.142106e-10 FALSE TRUE
ENST00000638977 ENSG00000197563 HEK293_OSMI2_2hA HEK293_TMG_2hB PIGN protein_coding protein_coding 8.485111 2.658642 11.81942 0.7427154 0.3593127 2.148202 0.01870929 0.10236691 0.0000000 0.10236691 0.00000000 -3.49014530 0.009570833 0.06050000 0.00000000 -0.06050000 5.799867e-01 4.142106e-10 FALSE TRUE
ENST00000640050 ENSG00000197563 HEK293_OSMI2_2hA HEK293_TMG_2hB PIGN protein_coding protein_coding 8.485111 2.658642 11.81942 0.7427154 0.3593127 2.148202 0.49674495 0.00000000 1.0280932 0.00000000 0.51998006 6.69779213 0.034091667 0.00000000 0.08783333 0.08783333 4.021390e-01 4.142106e-10 FALSE TRUE
ENST00000640170 ENSG00000197563 HEK293_OSMI2_2hA HEK293_TMG_2hB PIGN protein_coding nonsense_mediated_decay 8.485111 2.658642 11.81942 0.7427154 0.3593127 2.148202 0.52534715 0.79030322 0.9453242 0.45284747 0.49458541 0.25544366 0.107354167 0.25043333 0.07773333 -0.17270000 7.593606e-01 4.142106e-10 FALSE TRUE
ENST00000640593 ENSG00000197563 HEK293_OSMI2_2hA HEK293_TMG_2hB PIGN protein_coding nonsense_mediated_decay 8.485111 2.658642 11.81942 0.7427154 0.3593127 2.148202 0.66421638 0.15455738 0.1562632 0.15455738 0.15626324 0.01487843 0.056175000 0.07136667 0.01273333 -0.05863333 8.438743e-01 4.142106e-10 FALSE TRUE
MSTRG.15879.13 ENSG00000197563 HEK293_OSMI2_2hA HEK293_TMG_2hB PIGN protein_coding   8.485111 2.658642 11.81942 0.7427154 0.3593127 2.148202 0.44361009 0.07182576 2.1708453 0.07182576 0.40819744 4.73618859 0.043550000 0.03316667 0.18536667 0.15220000 1.180857e-01 4.142106e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000197563 E001 0.0000000       18 61905255 61905492 238 -      
ENSG00000197563 E002 0.0000000       18 62017629 62017741 113 -      
ENSG00000197563 E003 2.4617669 0.0077586834 3.755551e-01 5.199797e-01 18 62041164 62042470 1307 - 0.458 0.614 0.733
ENSG00000197563 E004 2.9194336 0.0054741061 3.207255e-01 4.638983e-01 18 62042471 62042851 381 - 0.507 0.675 0.754
ENSG00000197563 E005 8.7450424 0.0025499089 4.104652e-01 5.540574e-01 18 62042852 62044232 1381 - 0.962 0.858 -0.394
ENSG00000197563 E006 0.1451727 0.0456406137 1.000000e+00   18 62044233 62044233 1 - 0.068 0.000 -10.903
ENSG00000197563 E007 0.1451727 0.0456406137 1.000000e+00   18 62044234 62044235 2 - 0.068 0.000 -10.903
ENSG00000197563 E008 0.1451727 0.0456406137 1.000000e+00   18 62044236 62044239 4 - 0.068 0.000 -10.903
ENSG00000197563 E009 0.3666179 0.0705938249 3.268553e-01 4.702947e-01 18 62044240 62044241 2 - 0.068 0.211 1.879
ENSG00000197563 E010 1.1019300 0.6977382911 3.883514e-01 5.324350e-01 18 62044242 62044256 15 - 0.178 0.484 2.014
ENSG00000197563 E011 4.5309006 0.0165933524 1.568485e-03 5.856915e-03 18 62044257 62044300 44 - 0.529 0.987 1.869
ENSG00000197563 E012 6.3765910 0.0310790571 7.484019e-03 2.247092e-02 18 62044301 62044310 10 - 0.691 1.062 1.431
ENSG00000197563 E013 7.7093448 0.0053693906 3.308763e-03 1.117320e-02 18 62044311 62044323 13 - 0.773 1.128 1.333
ENSG00000197563 E014 8.0812758 0.0150858141 2.404272e-02 5.990426e-02 18 62044324 62044349 26 - 0.821 1.106 1.067
ENSG00000197563 E015 19.7312470 0.0092038328 2.192325e-03 7.818258e-03 18 62044350 62044548 199 - 1.179 1.459 0.976
ENSG00000197563 E016 15.7742859 0.0067855845 3.876438e-04 1.727017e-03 18 62044549 62044633 85 - 1.069 1.410 1.205
ENSG00000197563 E017 10.4923530 0.0084138302 4.039999e-02 9.175287e-02 18 62044634 62044635 2 - 0.946 1.183 0.863
ENSG00000197563 E018 21.6258027 0.0008586037 2.862473e-03 9.860120e-03 18 62044636 62044722 87 - 1.235 1.471 0.823
ENSG00000197563 E019 54.0081142 0.0004643634 3.410121e-03 1.146717e-02 18 62044723 62045186 464 - 1.644 1.800 0.530
ENSG00000197563 E020 24.2633573 0.0013141977 5.004923e-01 6.367345e-01 18 62045187 62045341 155 - 1.334 1.391 0.198
ENSG00000197563 E021 16.8503292 0.0078441921 1.868008e-01 3.097113e-01 18 62045342 62045368 27 - 1.165 1.304 0.491
ENSG00000197563 E022 20.5394577 0.0313623081 2.695325e-01 4.080249e-01 18 62045369 62045382 14 - 1.239 1.398 0.556
ENSG00000197563 E023 30.8052872 0.0009904709 1.074389e-04 5.563858e-04 18 62045383 62045434 52 - 1.374 1.636 0.900
ENSG00000197563 E024 40.0001637 0.0005531859 1.650909e-09 2.350163e-08 18 62045435 62045512 78 - 1.448 1.796 1.185
ENSG00000197563 E025 30.0161568 0.0030395347 6.370210e-06 4.429175e-05 18 62045513 62045525 13 - 1.338 1.659 1.102
ENSG00000197563 E026 55.5601599 0.0004524128 9.461394e-15 3.121617e-13 18 62045526 62045680 155 - 1.575 1.954 1.280
ENSG00000197563 E027 74.4469907 0.0003455238 3.875818e-09 5.154163e-08 18 62045681 62045979 299 - 1.748 2.005 0.864
ENSG00000197563 E028 4.9448298 0.0037076419 1.940610e-01 3.188879e-01 18 62051788 62052548 761 - 0.761 0.543 -0.936
ENSG00000197563 E029 1.6243469 0.0410541367 5.592019e-02 1.195553e-01 18 62052549 62052957 409 - 0.458 0.000 -14.362
ENSG00000197563 E030 0.1451727 0.0456406137 1.000000e+00   18 62056722 62056844 123 - 0.068 0.000 -10.903
ENSG00000197563 E031 0.1451727 0.0456406137 1.000000e+00   18 62058816 62059020 205 - 0.068 0.000 -10.903
ENSG00000197563 E032 0.0000000       18 62059048 62059168 121 -      
ENSG00000197563 E033 1.4811488 0.0091341770 8.992416e-01 9.397127e-01 18 62069392 62070389 998 - 0.373 0.351 -0.131
ENSG00000197563 E034 3.2869700 0.0055061709 4.569435e-01 5.973075e-01 18 62070390 62070506 117 - 0.551 0.675 0.549
ENSG00000197563 E035 0.2955422 0.0273879170 3.359961e-01   18 62072321 62072365 45 - 0.068 0.210 1.868
ENSG00000197563 E036 0.1482932 0.0411597534 1.140972e-01   18 62072370 62072672 303 - 0.000 0.210 14.366
ENSG00000197563 E037 41.4930726 0.0005389189 8.852570e-02 1.728694e-01 18 62072673 62072725 53 - 1.549 1.655 0.361
ENSG00000197563 E038 44.0962938 0.0028290189 1.412807e-02 3.851496e-02 18 62074779 62074821 43 - 1.559 1.714 0.527
ENSG00000197563 E039 1.0266025 0.0264548922 6.820816e-01 7.856084e-01 18 62074822 62076027 1206 - 0.267 0.350 0.545
ENSG00000197563 E040 41.3356858 0.0014660535 2.411039e-03 8.495093e-03 18 62082673 62082706 34 - 1.523 1.710 0.636
ENSG00000197563 E041 44.4172946 0.0007851276 1.282553e-03 4.918637e-03 18 62082707 62082746 40 - 1.553 1.741 0.639
ENSG00000197563 E042 54.5090675 0.0004833410 3.338907e-03 1.125951e-02 18 62084531 62084606 76 - 1.649 1.805 0.527
ENSG00000197563 E043 44.8226914 0.0023197196 8.841420e-02 1.726926e-01 18 62085209 62085264 56 - 1.581 1.693 0.380
ENSG00000197563 E044 0.8867404 0.0218589960 1.394055e-01 2.472287e-01 18 62088391 62088755 365 - 0.179 0.456 1.865
ENSG00000197563 E045 51.0721213 0.0030788124 1.874807e-01 3.105586e-01 18 62088756 62088842 87 - 1.641 1.724 0.283
ENSG00000197563 E046 45.9715404 0.0049727662 6.984848e-01 7.984448e-01 18 62090476 62090578 103 - 1.611 1.640 0.098
ENSG00000197563 E047 41.9005467 0.0005365047 6.334938e-01 7.481905e-01 18 62095848 62095950 103 - 1.571 1.604 0.112
ENSG00000197563 E048 37.7978976 0.0005924127 8.277572e-01 8.917262e-01 18 62101075 62101183 109 - 1.529 1.547 0.059
ENSG00000197563 E049 20.7749333 0.0009027069 5.909737e-01 7.137869e-01 18 62102794 62102810 17 - 1.272 1.320 0.170
ENSG00000197563 E050 40.6556489 0.0005754624 3.066786e-01 4.488585e-01 18 62102811 62102902 92 - 1.579 1.515 -0.219
ENSG00000197563 E051 0.0000000       18 62103589 62103599 11 -      
ENSG00000197563 E052 0.1515154 0.0467171007 1.000000e+00   18 62103719 62103799 81 - 0.068 0.000 -10.904
ENSG00000197563 E053 0.1472490 0.0476672510 1.000000e+00   18 62105040 62105542 503 - 0.068 0.000 -10.903
ENSG00000197563 E054 44.3315970 0.0005311620 1.469642e-02 3.980645e-02 18 62105543 62105634 92 - 1.635 1.480 -0.530
ENSG00000197563 E055 45.2208699 0.0009012191 1.692041e-03 6.257972e-03 18 62106789 62106881 93 - 1.651 1.443 -0.710
ENSG00000197563 E056 45.1722149 0.0005397401 7.210646e-03 2.177226e-02 18 62106986 62107085 100 - 1.644 1.472 -0.589
ENSG00000197563 E057 0.0000000       18 62107086 62107103 18 -      
ENSG00000197563 E058 0.6224193 0.0172671820 2.107853e-01 3.394853e-01 18 62107468 62107586 119 - 0.127 0.351 1.870
ENSG00000197563 E059 50.6789857 0.0028593582 1.965484e-04 9.492073e-04 18 62109834 62109973 140 - 1.708 1.452 -0.873
ENSG00000197563 E060 0.1451727 0.0456406137 1.000000e+00   18 62109974 62110150 177 - 0.068 0.000 -10.903
ENSG00000197563 E061 0.4513240 0.1436633602 6.367916e-01 7.507421e-01 18 62112565 62112810 246 - 0.127 0.209 0.856
ENSG00000197563 E062 0.2998086 0.0272085000 3.358766e-01   18 62112811 62112812 2 - 0.068 0.210 1.868
ENSG00000197563 E063 2.5740220 0.1086216288 7.704766e-01 8.517853e-01 18 62112813 62113133 321 - 0.530 0.454 -0.372
ENSG00000197563 E064 55.7949570 0.0004395290 1.051370e-07 1.063876e-06 18 62113134 62113316 183 - 1.758 1.423 -1.143
ENSG00000197563 E065 36.6121616 0.0006123613 3.042580e-03 1.039078e-02 18 62114561 62114639 79 - 1.561 1.345 -0.742
ENSG00000197563 E066 0.8417882 0.0337709010 6.624522e-02 1.371316e-01 18 62118547 62118657 111 - 0.127 0.458 2.458
ENSG00000197563 E067 0.5244761 0.3820656452 5.511553e-01 6.806696e-01 18 62123507 62123544 38 - 0.128 0.214 0.900
ENSG00000197563 E068 0.1451727 0.0456406137 1.000000e+00   18 62135653 62135740 88 - 0.068 0.000 -10.903
ENSG00000197563 E069 1.8551536 0.0088290352 3.589098e-01 5.032760e-01 18 62135741 62136732 992 - 0.373 0.542 0.869
ENSG00000197563 E070 2.1466329 0.0065726350 1.489519e-01 2.602653e-01 18 62136733 62137112 380 - 0.507 0.210 -1.829
ENSG00000197563 E071 0.3697384 0.0255455630 2.302454e-02 5.780148e-02 18 62137113 62138242 1130 - 0.000 0.351 15.370
ENSG00000197563 E072 35.8335436 0.0006949914 2.658825e-02 6.513643e-02 18 62138243 62138298 56 - 1.540 1.381 -0.549
ENSG00000197563 E073 44.3106132 0.0005073739 5.835450e-02 1.238041e-01 18 62138983 62139075 93 - 1.625 1.507 -0.405
ENSG00000197563 E074 36.8708537 0.0006198837 4.297488e-02 9.649826e-02 18 62140420 62140479 60 - 1.553 1.413 -0.480
ENSG00000197563 E075 37.4983891 0.0005764714 7.458390e-01 8.337530e-01 18 62143306 62143346 41 - 1.534 1.515 -0.065
ENSG00000197563 E076 40.5900481 0.0022693858 3.588583e-02 8.336149e-02 18 62145909 62145980 72 - 1.592 1.443 -0.512
ENSG00000197563 E077 24.0061197 0.0047618894 3.227777e-03 1.093787e-02 18 62145981 62145992 12 - 1.395 1.107 -1.013
ENSG00000197563 E078 28.4873453 0.0053950855 2.156269e-03 7.708816e-03 18 62145993 62146025 33 - 1.466 1.184 -0.985
ENSG00000197563 E079 25.8174695 0.0044470588 8.596987e-04 3.472355e-03 18 62146971 62146995 25 - 1.429 1.108 -1.131
ENSG00000197563 E080 37.1504128 0.0007218233 2.689312e-04 1.253277e-03 18 62146996 62147101 106 - 1.577 1.307 -0.931
ENSG00000197563 E081 23.9304134 0.0007907310 6.653828e-04 2.772126e-03 18 62148214 62148253 40 - 1.401 1.086 -1.110
ENSG00000197563 E082 24.3736330 0.0015099950 6.254392e-04 2.626404e-03 18 62148254 62148338 85 - 1.407 1.086 -1.130
ENSG00000197563 E083 0.0000000       18 62153445 62153568 124 -      
ENSG00000197563 E084 0.6265839 0.0193874923 9.944434e-04 3.939198e-03 18 62153569 62154544 976 - 0.000 0.542 16.365
ENSG00000197563 E085 18.7785565 0.0094756449 3.752257e-03 1.244579e-02 18 62154545 62154565 21 - 1.302 0.958 -1.237
ENSG00000197563 E086 28.7861077 0.0086563927 8.751492e-04 3.527315e-03 18 62154566 62154651 86 - 1.478 1.147 -1.159
ENSG00000197563 E087 21.6172211 0.0020935775 4.287736e-02 9.631696e-02 18 62157129 62157155 27 - 1.338 1.148 -0.668
ENSG00000197563 E088 28.5578118 0.0006928565 1.002802e-02 2.883257e-02 18 62157156 62157227 72 - 1.458 1.250 -0.724
ENSG00000197563 E089 34.0836740 0.0006029378 1.855029e-04 9.013560e-04 18 62157687 62157779 93 - 1.542 1.250 -1.011
ENSG00000197563 E090 26.8171629 0.0007431731 8.702396e-04 3.510141e-03 18 62157780 62157808 29 - 1.440 1.148 -1.022
ENSG00000197563 E091 0.1451727 0.0456406137 1.000000e+00   18 62157809 62157980 172 - 0.068 0.000 -10.903
ENSG00000197563 E092 0.0000000       18 62157981 62158008 28 -      
ENSG00000197563 E093 41.3328711 0.0023984763 1.482525e-03 5.580633e-03 18 62161133 62161226 94 - 1.615 1.380 -0.804
ENSG00000197563 E094 48.5738430 0.0019934422 1.890495e-02 4.912538e-02 18 62161227 62161351 125 - 1.670 1.515 -0.530
ENSG00000197563 E095 27.8332905 0.0007100004 5.272706e-01 6.603850e-01 18 62161352 62161385 34 - 1.415 1.369 -0.160
ENSG00000197563 E096 8.6633336 0.0114641015 3.286142e-02 7.753185e-02 18 62162253 62162262 10 - 0.994 0.674 -1.249
ENSG00000197563 E097 15.5436204 0.0151517152 1.837131e-03 6.718122e-03 18 62162263 62162329 67 - 1.235 0.818 -1.535
ENSG00000197563 E098 0.7406253 0.0154374197 2.939701e-01 4.350443e-01 18 62162330 62162512 183 - 0.267 0.000 -13.225
ENSG00000197563 E099 23.6670899 0.0010009159 2.856048e-08 3.228918e-07 18 62163531 62163656 126 - 1.424 0.820 -2.189
ENSG00000197563 E100 0.1472490 0.0476672510 1.000000e+00   18 62174327 62174430 104 - 0.068 0.000 -10.903
ENSG00000197563 E101 0.0000000       18 62184521 62184671 151 -      
ENSG00000197563 E102 5.4936809 0.0440484485 3.823131e-08 4.218046e-07 18 62186250 62186313 64 - 0.373 1.202 3.456
ENSG00000197563 E103 37.0268207 0.0006190715 1.944762e-03 7.055059e-03 18 62186844 62187022 179 - 1.569 1.345 -0.771
ENSG00000197563 E104 1.1145163 0.0585392167 6.687787e-01 7.757043e-01 18 62187023 62187118 96 - 0.267 0.351 0.549