ENSG00000197530

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000464570 ENSG00000197530 HEK293_OSMI2_2hA HEK293_TMG_2hB MIB2 protein_coding retained_intron 27.04895 28.46156 24.64281 2.592277 1.603981 -0.2077692 1.7448241 2.9759283 0.6566849 0.3849081 0.44268914 -2.16310266 0.05562917 0.106100000 0.02520000 -0.08090000 0.24981341 1.68836e-05    
ENST00000473511 ENSG00000197530 HEK293_OSMI2_2hA HEK293_TMG_2hB MIB2 protein_coding retained_intron 27.04895 28.46156 24.64281 2.592277 1.603981 -0.2077692 0.9109238 0.0000000 1.5373959 0.0000000 0.85033202 7.27369850 0.03462917 0.000000000 0.06056667 0.06056667 0.16793668 1.68836e-05 TRUE  
ENST00000479659 ENSG00000197530 HEK293_OSMI2_2hA HEK293_TMG_2hB MIB2 protein_coding retained_intron 27.04895 28.46156 24.64281 2.592277 1.603981 -0.2077692 2.1341051 1.7249501 1.8280120 0.1746086 0.08652303 0.08325204 0.07962917 0.060566667 0.07436667 0.01380000 0.44773615 1.68836e-05 FALSE  
ENST00000486072 ENSG00000197530 HEK293_OSMI2_2hA HEK293_TMG_2hB MIB2 protein_coding nonsense_mediated_decay 27.04895 28.46156 24.64281 2.592277 1.603981 -0.2077692 1.7242416 0.2612776 2.4351056 0.2612776 0.39300468 3.17205521 0.06384583 0.007933333 0.10120000 0.09326667 0.03106273 1.68836e-05 FALSE  
ENST00000489635 ENSG00000197530 HEK293_OSMI2_2hA HEK293_TMG_2hB MIB2 protein_coding nonsense_mediated_decay 27.04895 28.46156 24.64281 2.592277 1.603981 -0.2077692 1.3675544 2.7715456 0.5224991 0.3040397 0.44715363 -2.38503585 0.04721250 0.099466667 0.01940000 -0.08006667 0.12393202 1.68836e-05 FALSE  
ENST00000505370 ENSG00000197530 HEK293_OSMI2_2hA HEK293_TMG_2hB MIB2 protein_coding retained_intron 27.04895 28.46156 24.64281 2.592277 1.603981 -0.2077692 2.5932465 1.8866307 2.9462264 0.3989896 0.52043844 0.64031797 0.09870000 0.066266667 0.12003333 0.05376667 0.21599819 1.68836e-05 FALSE  
ENST00000508455 ENSG00000197530 HEK293_OSMI2_2hA HEK293_TMG_2hB MIB2 protein_coding retained_intron 27.04895 28.46156 24.64281 2.592277 1.603981 -0.2077692 2.3295596 1.6648914 2.9868481 0.2702951 0.70591141 0.83937844 0.08835833 0.057933333 0.11893333 0.06100000 0.09954437 1.68836e-05    
ENST00000511502 ENSG00000197530 HEK293_OSMI2_2hA HEK293_TMG_2hB MIB2 protein_coding retained_intron 27.04895 28.46156 24.64281 2.592277 1.603981 -0.2077692 2.0964113 2.4401124 1.4860452 0.6492380 0.53597231 -0.71169414 0.07840417 0.083500000 0.06180000 -0.02170000 0.69695984 1.68836e-05 TRUE  
MSTRG.112.30 ENSG00000197530 HEK293_OSMI2_2hA HEK293_TMG_2hB MIB2 protein_coding   27.04895 28.46156 24.64281 2.592277 1.603981 -0.2077692 1.4412648 1.5836799 1.2755767 0.3729339 0.18496329 -0.30994617 0.05163333 0.055100000 0.05200000 -0.00310000 0.98819747 1.68836e-05 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000197530 E001 0.0000000       1 1613618 1613679 62 +      
ENSG00000197530 E002 0.0000000       1 1613680 1613706 27 +      
ENSG00000197530 E003 0.0000000       1 1613707 1613760 54 +      
ENSG00000197530 E004 0.0000000       1 1613761 1613761 1 +      
ENSG00000197530 E005 0.0000000       1 1613762 1613770 9 +      
ENSG00000197530 E006 0.0000000       1 1613771 1613771 1 +      
ENSG00000197530 E007 0.0000000       1 1613772 1613794 23 +      
ENSG00000197530 E008 0.8438645 0.0143046871 9.213391e-01 9.543345e-01 1 1613795 1615453 1659 + 0.264 0.246 -0.135
ENSG00000197530 E009 2.0606009 0.0073152711 3.502360e-01 4.944311e-01 1 1615454 1615495 42 + 0.353 0.516 0.864
ENSG00000197530 E010 3.3515205 0.0048191527 3.672459e-02 8.494742e-02 1 1615496 1615499 4 + 0.353 0.704 1.695
ENSG00000197530 E011 6.0755423 0.0065106178 4.410280e-01 5.826744e-01 1 1615500 1615513 14 + 0.748 0.851 0.407
ENSG00000197530 E012 6.5935739 0.0026926054 2.560634e-01 3.930135e-01 1 1615514 1615515 2 + 0.748 0.895 0.576
ENSG00000197530 E013 10.2793583 0.0019033481 2.273619e-02 5.720645e-02 1 1615516 1615529 14 + 0.836 1.094 0.964
ENSG00000197530 E014 46.0171177 0.0014527036 1.056594e-01 1.990975e-01 1 1615530 1615633 104 + 1.572 1.665 0.317
ENSG00000197530 E015 3.3873147 0.0139624134 1.363425e-01 2.429566e-01 1 1615634 1615877 244 + 0.748 0.517 -1.005
ENSG00000197530 E016 0.6633060 0.0333376463 1.386595e-01 2.462468e-01 1 1615878 1615878 1 + 0.353 0.098 -2.302
ENSG00000197530 E017 0.9620705 0.0123172209 2.330333e-02 5.838250e-02 1 1615879 1615879 1 + 0.490 0.098 -3.041
ENSG00000197530 E018 1.8769115 0.0077846791 9.848167e-03 2.839173e-02 1 1615880 1615886 7 + 0.678 0.246 -2.305
ENSG00000197530 E019 2.8356710 0.0055133906 4.932967e-02 1.079714e-01 1 1615887 1615893 7 + 0.748 0.443 -1.373
ENSG00000197530 E020 5.3319805 0.0069967017 3.819407e-03 1.263512e-02 1 1615894 1615904 11 + 0.990 0.607 -1.526
ENSG00000197530 E021 6.9905527 0.0028009914 1.163790e-03 4.518055e-03 1 1615905 1615913 9 + 1.089 0.704 -1.474
ENSG00000197530 E022 13.3871999 0.0012974323 1.466100e-03 5.526887e-03 1 1615914 1615967 54 + 1.297 1.006 -1.042
ENSG00000197530 E023 37.7533414 0.0006554117 9.138935e-01 9.494932e-01 1 1615968 1616100 133 + 1.557 1.550 -0.024
ENSG00000197530 E024 0.9683114 0.0166177985 5.504269e-01 6.800671e-01 1 1616274 1616309 36 + 0.353 0.245 -0.722
ENSG00000197530 E025 0.5202097 0.0201177352 3.188160e-01 4.618028e-01 1 1616310 1616310 1 + 0.264 0.098 -1.719
ENSG00000197530 E026 6.1174219 0.0072777536 9.390059e-01 9.656961e-01 1 1616311 1616507 197 + 0.808 0.819 0.043
ENSG00000197530 E027 101.1207581 0.0053524900 6.413999e-02 1.335956e-01 1 1616508 1616614 107 + 1.912 2.009 0.327
ENSG00000197530 E028 51.5522947 0.0052775740 1.152749e-04 5.921980e-04 1 1616615 1617074 460 + 1.515 1.764 0.845
ENSG00000197530 E029 11.8864732 0.0045718179 2.120325e-02 5.402170e-02 1 1617075 1617077 3 + 0.909 1.159 0.919
ENSG00000197530 E030 34.9389854 0.0028252007 2.191143e-02 5.549316e-02 1 1617078 1617407 330 + 1.423 1.577 0.528
ENSG00000197530 E031 2.6572020 0.0240051526 1.021339e-02 2.929176e-02 1 1617408 1617515 108 + 0.779 0.356 -1.985
ENSG00000197530 E032 2.0337505 0.1028955614 5.762688e-02 1.225527e-01 1 1617516 1617559 44 + 0.678 0.304 -1.896
ENSG00000197530 E033 1.5606566 0.1219131301 2.311702e-02 5.799136e-02 1 1617560 1617576 17 + 0.639 0.179 -2.721
ENSG00000197530 E034 3.3405698 0.0114137985 4.569903e-05 2.599941e-04 1 1617577 1617715 139 + 0.931 0.304 -2.893
ENSG00000197530 E035 17.6522142 0.0010392064 4.063252e-10 6.472470e-09 1 1617716 1619210 1495 + 1.504 0.995 -1.800
ENSG00000197530 E036 7.2643500 0.0022863498 3.076706e-03 1.049200e-02 1 1623122 1623388 267 + 1.089 0.745 -1.305
ENSG00000197530 E037 34.3669451 0.0025574170 4.908920e-02 1.075344e-01 1 1623389 1623430 42 + 1.596 1.470 -0.432
ENSG00000197530 E038 51.6850845 0.0126842292 4.080833e-01 5.516598e-01 1 1623431 1623482 52 + 1.729 1.672 -0.192
ENSG00000197530 E039 34.8005511 0.0091919742 2.035377e-02 5.222826e-02 1 1623483 1623580 98 + 1.627 1.458 -0.579
ENSG00000197530 E040 38.5106119 0.0005565731 6.248594e-02 1.308258e-01 1 1623581 1623679 99 + 1.635 1.528 -0.367
ENSG00000197530 E041 26.1065049 0.0021192493 1.496375e-01 2.611814e-01 1 1623680 1623699 20 + 1.475 1.372 -0.354
ENSG00000197530 E042 50.9498350 0.0004525772 5.457147e-01 6.760174e-01 1 1623774 1623801 28 + 1.705 1.674 -0.107
ENSG00000197530 E043 105.8236543 0.0008874629 2.654537e-01 4.035097e-01 1 1623802 1623945 144 + 2.023 1.981 -0.140
ENSG00000197530 E044 23.0227770 0.0009101327 2.498365e-09 3.440736e-08 1 1623946 1624209 264 + 1.587 1.160 -1.484
ENSG00000197530 E045 11.1686402 0.0015913376 2.296625e-04 1.090502e-03 1 1624744 1624794 51 + 1.258 0.895 -1.322
ENSG00000197530 E046 112.5856710 0.0003760057 4.800632e-01 6.183695e-01 1 1624795 1624901 107 + 2.007 2.032 0.082
ENSG00000197530 E047 5.2476505 0.0032104401 1.252417e-01 2.274717e-01 1 1624965 1624990 26 + 0.886 0.682 -0.813
ENSG00000197530 E048 108.0832373 0.0019250835 8.138422e-01 8.820061e-01 1 1624991 1625086 96 + 2.009 2.001 -0.026
ENSG00000197530 E049 98.0700805 0.0020084020 1.615589e-01 2.771356e-01 1 1625087 1625185 99 + 2.002 1.945 -0.191
ENSG00000197530 E050 121.4682626 0.0006119688 1.423456e-01 2.512362e-01 1 1625286 1625428 143 + 2.026 2.077 0.170
ENSG00000197530 E051 17.2003982 0.0412677205 9.198942e-01 9.534042e-01 1 1625429 1625545 117 + 1.249 1.226 -0.083
ENSG00000197530 E052 43.8168919 0.0005405889 1.191633e-01 2.187448e-01 1 1625546 1625557 12 + 1.679 1.594 -0.289
ENSG00000197530 E053 46.1730467 0.0006781851 2.467165e-01 3.820896e-01 1 1625558 1625566 9 + 1.687 1.624 -0.213
ENSG00000197530 E054 77.9392365 0.0003755116 6.460819e-01 7.580917e-01 1 1625567 1625653 87 + 1.882 1.862 -0.067
ENSG00000197530 E055 67.1968868 0.0003587794 6.906722e-14 2.007761e-12 1 1625654 1626366 713 + 1.989 1.667 -1.088
ENSG00000197530 E056 54.5365315 0.0005718102 7.732214e-13 1.933278e-11 1 1626367 1626649 283 + 1.910 1.566 -1.165
ENSG00000197530 E057 132.6056251 0.0028848928 5.572341e-01 6.856890e-01 1 1626650 1626754 105 + 2.114 2.092 -0.074
ENSG00000197530 E058 99.0368082 0.0003704469 2.041850e-01 3.314048e-01 1 1626837 1626859 23 + 2.002 1.954 -0.159
ENSG00000197530 E059 184.9033646 0.0002493206 4.184455e-02 9.444037e-02 1 1626860 1626999 140 + 2.201 2.257 0.186
ENSG00000197530 E060 6.3763609 0.0026739404 1.727566e-01 2.917812e-01 1 1627000 1627073 74 + 0.951 0.783 -0.647
ENSG00000197530 E061 171.2473800 0.0002376765 1.708701e-04 8.388801e-04 1 1627074 1627207 134 + 2.128 2.237 0.364
ENSG00000197530 E062 166.8270032 0.0002130246 2.322787e-04 1.101131e-03 1 1627296 1627444 149 + 2.120 2.227 0.359
ENSG00000197530 E063 10.0665833 0.0017270234 2.404279e-04 1.135076e-03 1 1627445 1627459 15 + 1.227 0.850 -1.383
ENSG00000197530 E064 11.8057116 0.0014769374 1.186924e-06 9.702241e-06 1 1627460 1627521 62 + 1.332 0.866 -1.691
ENSG00000197530 E065 23.0607548 0.0051578136 3.954003e-06 2.879836e-05 1 1627522 1627672 151 + 1.562 1.203 -1.249
ENSG00000197530 E066 153.6529578 0.0002681673 3.673618e-03 1.222154e-02 1 1627673 1627829 157 + 2.097 2.185 0.295
ENSG00000197530 E067 4.2820671 0.0425239675 1.771507e-01 2.975262e-01 1 1627830 1627830 1 + 0.545 0.779 0.998
ENSG00000197530 E068 186.2725716 0.0013328287 1.024962e-02 2.938008e-02 1 1628019 1628179 161 + 2.185 2.268 0.278
ENSG00000197530 E069 29.8597966 0.0073931305 1.533866e-03 5.746105e-03 1 1628180 1628272 93 + 1.596 1.362 -0.806
ENSG00000197530 E070 160.2171874 0.0040918516 2.246873e-03 7.989328e-03 1 1628273 1628399 127 + 2.086 2.219 0.446
ENSG00000197530 E071 11.8082570 0.0304281636 2.301917e-01 3.626840e-01 1 1628400 1628488 89 + 1.171 1.020 -0.544
ENSG00000197530 E072 169.8102949 0.0006361712 1.727022e-05 1.086901e-04 1 1628489 1628722 234 + 2.110 2.243 0.444
ENSG00000197530 E073 13.8363641 0.0017608647 1.291779e-05 8.361472e-05 1 1629034 1629105 72 + 1.364 0.972 -1.404
ENSG00000197530 E074 8.2432852 0.0041612826 8.184114e-04 3.325361e-03 1 1629106 1629132 27 + 1.157 0.783 -1.400
ENSG00000197530 E075 75.9423245 0.0078455531 1.178636e-01 2.168677e-01 1 1629133 1629311 179 + 1.917 1.824 -0.311
ENSG00000197530 E076 29.6134829 0.0164410398 1.399628e-01 2.479762e-01 1 1629385 1629404 20 + 1.538 1.405 -0.455
ENSG00000197530 E077 29.2580414 0.0142532068 6.727735e-02 1.388271e-01 1 1629405 1629423 19 + 1.548 1.391 -0.540
ENSG00000197530 E078 37.9868179 0.0005694248 9.985660e-01 1.000000e+00 1 1629424 1629472 49 + 1.557 1.556 -0.003
ENSG00000197530 E079 30.4661463 0.0066387129 1.029133e-01 1.949076e-01 1 1629473 1629487 15 + 1.372 1.501 0.446
ENSG00000197530 E080 51.3766818 0.0004496067 1.750954e-04 8.573391e-04 1 1629488 1629566 79 + 1.542 1.745 0.689
ENSG00000197530 E081 2.9077022 0.0074285322 5.736244e-01 6.995534e-01 1 1629567 1629638 72 + 0.638 0.548 -0.400
ENSG00000197530 E082 67.4912741 0.0003777785 9.839782e-06 6.552948e-05 1 1629639 1629704 66 + 1.656 1.865 0.707
ENSG00000197530 E083 101.1606313 0.0003231086 7.435573e-07 6.351445e-06 1 1630292 1630605 314 + 1.845 2.036 0.641