ENSG00000196547

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000360468 ENSG00000196547 HEK293_OSMI2_2hA HEK293_TMG_2hB MAN2A2 protein_coding protein_coding 28.10653 23.16451 22.76279 1.535643 0.614256 -0.02522794 4.2607271 4.7650044 2.355671 0.55739578 1.29334831 -1.01325233 0.15442083 0.20520000 0.10366667 -0.101533333 6.623320e-01 7.017905e-07 FALSE TRUE
ENST00000558374 ENSG00000196547 HEK293_OSMI2_2hA HEK293_TMG_2hB MAN2A2 protein_coding retained_intron 28.10653 23.16451 22.76279 1.535643 0.614256 -0.02522794 3.6206550 2.8108837 2.596717 0.99576266 0.11822182 -0.11391333 0.12742500 0.11736667 0.11403333 -0.003333333 9.898924e-01 7.017905e-07 FALSE TRUE
ENST00000559374 ENSG00000196547 HEK293_OSMI2_2hA HEK293_TMG_2hB MAN2A2 protein_coding retained_intron 28.10653 23.16451 22.76279 1.535643 0.614256 -0.02522794 1.9296943 0.6935799 1.922623 0.03395145 0.07373909 1.45777395 0.06692917 0.03000000 0.08463333 0.054633333 7.017905e-07 7.017905e-07 TRUE TRUE
ENST00000559717 ENSG00000196547 HEK293_OSMI2_2hA HEK293_TMG_2hB MAN2A2 protein_coding protein_coding 28.10653 23.16451 22.76279 1.535643 0.614256 -0.02522794 1.3422763 1.3432490 1.253307 0.69138834 1.25330659 -0.09922252 0.05058750 0.06143333 0.05386667 -0.007566667 5.665083e-01 7.017905e-07 FALSE TRUE
ENST00000561047 ENSG00000196547 HEK293_OSMI2_2hA HEK293_TMG_2hB MAN2A2 protein_coding retained_intron 28.10653 23.16451 22.76279 1.535643 0.614256 -0.02522794 2.2625971 1.5093016 2.166983 0.14373545 0.21423243 0.51892185 0.08038750 0.06603333 0.09506667 0.029033333 2.934674e-01 7.017905e-07 FALSE TRUE
ENST00000561448 ENSG00000196547 HEK293_OSMI2_2hA HEK293_TMG_2hB MAN2A2 protein_coding nonsense_mediated_decay 28.10653 23.16451 22.76279 1.535643 0.614256 -0.02522794 3.6576864 5.0488357 2.552425 0.32079974 0.24939219 -0.98129547 0.13341667 0.21836667 0.11200000 -0.106366667 2.393946e-05 7.017905e-07 TRUE TRUE
MSTRG.11550.2 ENSG00000196547 HEK293_OSMI2_2hA HEK293_TMG_2hB MAN2A2 protein_coding   28.10653 23.16451 22.76279 1.535643 0.614256 -0.02522794 0.8475962 0.2995251 1.614250 0.06665462 0.28312644 2.39164516 0.03335833 0.01290000 0.07073333 0.057833333 8.483523e-06 7.017905e-07 TRUE TRUE
MSTRG.11550.8 ENSG00000196547 HEK293_OSMI2_2hA HEK293_TMG_2hB MAN2A2 protein_coding   28.10653 23.16451 22.76279 1.535643 0.614256 -0.02522794 1.9862086 2.4603911 1.211413 0.80269772 0.70041078 -1.01618887 0.06880417 0.10256667 0.05466667 -0.047900000 6.766460e-01 7.017905e-07 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000196547 E001 0.5138669 0.0204376107 4.271566e-01 5.699954e-01 15 90902218 90902274 57 + 0.240 0.110 -1.357
ENSG00000196547 E002 1.2618791 0.0102275484 7.433421e-02 1.504799e-01 15 90902275 90902376 102 + 0.507 0.197 -1.944
ENSG00000196547 E003 3.2535708 0.0349829666 1.208834e-01 2.212102e-01 15 90902377 90902427 51 + 0.763 0.516 -1.069
ENSG00000196547 E004 6.1485755 0.0031077361 5.766973e-02 1.226287e-01 15 90902428 90902526 99 + 0.977 0.748 -0.883
ENSG00000196547 E005 2.8086818 0.0061349733 5.346484e-08 5.726341e-07 15 90902695 90902812 118 + 0.903 0.000 -15.200
ENSG00000196547 E006 3.4602459 0.0500097040 2.935808e-05 1.751031e-04 15 90902813 90902860 48 + 0.941 0.197 -3.748
ENSG00000196547 E007 3.0488120 0.1279249672 9.237193e-02 1.788154e-01 15 90902861 90902897 37 + 0.762 0.439 -1.453
ENSG00000196547 E008 5.3267081 0.0891722627 1.439403e-01 2.533781e-01 15 90902898 90902925 28 + 0.922 0.678 -0.967
ENSG00000196547 E009 10.1405421 0.0344426914 2.781615e-02 6.765202e-02 15 90902926 90902975 50 + 1.186 0.900 -1.048
ENSG00000196547 E010 26.2481055 0.0013749344 1.154978e-01 2.135662e-01 15 90903231 90903301 71 + 1.479 1.375 -0.357
ENSG00000196547 E011 38.5799089 0.0026583757 4.770323e-02 1.050900e-01 15 90903302 90903432 131 + 1.648 1.533 -0.392
ENSG00000196547 E012 1.2199482 0.0110578693 7.472567e-02 1.510935e-01 15 90903433 90903681 249 + 0.507 0.197 -1.945
ENSG00000196547 E013 2.1650919 0.0254199048 1.402895e-01 2.484174e-01 15 90903682 90903734 53 + 0.635 0.386 -1.209
ENSG00000196547 E014 0.5806908 0.8654575042 2.469727e-01 3.823788e-01 15 90903735 90903741 7 + 0.391 0.000 -11.180
ENSG00000196547 E015 1.2481495 0.0163736696 1.088725e-02 3.089743e-02 15 90903744 90903845 102 + 0.554 0.110 -3.164
ENSG00000196547 E016 1.2533463 0.0101760435 7.437610e-02 1.505377e-01 15 90903846 90904034 189 + 0.507 0.197 -1.944
ENSG00000196547 E017 0.9641468 0.0121989077 4.678110e-02 1.034328e-01 15 90904035 90904189 155 + 0.454 0.110 -2.680
ENSG00000196547 E018 57.9230656 0.0015407279 8.172386e-03 2.421954e-02 15 90904190 90904339 150 + 1.828 1.703 -0.422
ENSG00000196547 E019 66.6504856 0.0003942582 1.072178e-02 3.050230e-02 15 90905251 90905378 128 + 1.875 1.769 -0.358
ENSG00000196547 E020 72.9063611 0.0037444869 1.230448e-02 3.426599e-02 15 90905379 90905508 130 + 1.918 1.800 -0.398
ENSG00000196547 E021 78.6361855 0.0030607482 3.756326e-03 1.245754e-02 15 90905579 90905689 111 + 1.959 1.828 -0.440
ENSG00000196547 E022 55.4363512 0.0173469273 3.307158e-02 7.795197e-02 15 90905690 90905723 34 + 1.823 1.670 -0.519
ENSG00000196547 E023 65.8225918 0.0145199001 1.237593e-01 2.253106e-01 15 90905845 90905921 77 + 1.869 1.768 -0.340
ENSG00000196547 E024 53.6864874 0.0005119124 8.562228e-01 9.111013e-01 15 90905922 90905979 58 + 1.724 1.720 -0.014
ENSG00000196547 E025 47.9829487 0.0006835555 3.879416e-01 5.320514e-01 15 90905980 90906016 37 + 1.696 1.656 -0.135
ENSG00000196547 E026 63.7827363 0.0003666563 9.930284e-01 9.997728e-01 15 90906370 90906452 83 + 1.794 1.798 0.015
ENSG00000196547 E027 49.8711062 0.0004877077 8.514774e-01 9.079132e-01 15 90906453 90906497 45 + 1.686 1.700 0.048
ENSG00000196547 E028 74.0027242 0.0004044621 3.889824e-01 5.330619e-01 15 90906740 90906849 110 + 1.880 1.849 -0.105
ENSG00000196547 E029 65.1364493 0.0004378314 2.428059e-01 3.774729e-01 15 90906850 90906913 64 + 1.833 1.786 -0.158
ENSG00000196547 E030 3.5943926 0.1916082360 1.430191e-01 2.521385e-01 15 90907189 90907308 120 + 0.817 0.487 -1.427
ENSG00000196547 E031 68.8693756 0.0003886778 6.212297e-03 1.917308e-02 15 90907309 90907387 79 + 1.892 1.780 -0.379
ENSG00000196547 E032 69.6992928 0.0003533229 2.577597e-02 6.348059e-02 15 90907388 90907495 108 + 1.886 1.796 -0.303
ENSG00000196547 E033 0.8930831 0.2791856653 7.182727e-01 8.134307e-01 15 90907496 90907519 24 + 0.324 0.262 -0.417
ENSG00000196547 E034 100.7409329 0.0005004310 2.704402e-01 4.091003e-01 15 90909327 90909504 178 + 2.013 1.978 -0.118
ENSG00000196547 E035 70.2997815 0.0005287209 4.338466e-01 5.762367e-01 15 90910090 90910154 65 + 1.856 1.827 -0.097
ENSG00000196547 E036 64.1968710 0.0003810175 1.750185e-01 2.946951e-01 15 90910155 90910215 61 + 1.833 1.778 -0.187
ENSG00000196547 E037 69.9971847 0.0003642108 5.582852e-01 6.865479e-01 15 90910216 90910292 77 + 1.819 1.849 0.101
ENSG00000196547 E038 78.9452685 0.0003470539 3.366923e-01 4.805574e-01 15 90910501 90910609 109 + 1.863 1.906 0.148
ENSG00000196547 E039 40.3807408 0.0005395891 5.944090e-01 7.166477e-01 15 90910610 90910619 10 + 1.618 1.594 -0.085
ENSG00000196547 E040 61.8592245 0.0003952043 8.163604e-01 8.838049e-01 15 90910620 90910683 64 + 1.773 1.788 0.052
ENSG00000196547 E041 92.6164737 0.0020692970 5.691284e-02 1.213093e-01 15 90910847 90910961 115 + 1.999 1.925 -0.250
ENSG00000196547 E042 9.7077979 0.0116296995 3.376461e-04 1.530947e-03 15 90910962 90911170 209 + 1.217 0.811 -1.501
ENSG00000196547 E043 87.0281497 0.0057415969 5.183349e-01 6.525888e-01 15 90911171 90911238 68 + 1.948 1.920 -0.094
ENSG00000196547 E044 8.4415230 0.0019917040 1.038467e-02 2.970654e-02 15 90911239 90911366 128 + 1.107 0.829 -1.036
ENSG00000196547 E045 4.9223864 0.0131830584 6.317223e-02 1.319930e-01 15 90911367 90911384 18 + 0.903 0.648 -1.022
ENSG00000196547 E046 45.6404820 0.0005038089 8.360692e-01 8.975000e-01 15 90911385 90911395 11 + 1.648 1.664 0.053
ENSG00000196547 E047 48.2356756 0.0004779764 7.031137e-01 8.018427e-01 15 90911396 90911415 20 + 1.666 1.690 0.082
ENSG00000196547 E048 93.2424703 0.0003137457 4.644868e-01 6.042038e-01 15 90911416 90911550 135 + 1.974 1.952 -0.075
ENSG00000196547 E049 2.2958419 0.1034539379 8.803952e-02 1.721419e-01 15 90911852 90912042 191 + 0.671 0.336 -1.661
ENSG00000196547 E050 81.2381016 0.0003361587 8.039310e-01 8.752353e-01 15 90912043 90912182 140 + 1.890 1.905 0.050
ENSG00000196547 E051 74.3337142 0.0004428483 1.890758e-01 3.125778e-01 15 90912183 90912279 97 + 1.888 1.838 -0.168
ENSG00000196547 E052 17.3479674 0.0010120276 3.505863e-08 3.893858e-07 15 90912280 90912516 237 + 1.468 1.021 -1.581
ENSG00000196547 E053 15.9209966 0.0386148468 1.291158e-01 2.329404e-01 15 90912517 90912541 25 + 1.312 1.144 -0.596
ENSG00000196547 E054 82.0349518 0.0003196569 8.916211e-01 9.347814e-01 15 90912542 90912664 123 + 1.896 1.907 0.035
ENSG00000196547 E055 43.4478130 0.0005454755 1.182316e-01 2.173912e-01 15 90912877 90912879 3 + 1.676 1.597 -0.269
ENSG00000196547 E056 46.4317732 0.0005736610 2.203785e-01 3.508614e-01 15 90912880 90912887 8 + 1.693 1.633 -0.201
ENSG00000196547 E057 95.3514134 0.0004495142 8.941818e-02 1.742422e-01 15 90912888 90912991 104 + 2.001 1.943 -0.195
ENSG00000196547 E058 100.8062198 0.0021226116 9.544115e-01 9.754343e-01 15 90913273 90913374 102 + 1.991 1.999 0.026
ENSG00000196547 E059 58.9715190 0.0136342652 9.839661e-01 9.940615e-01 15 90913375 90913406 32 + 1.765 1.769 0.013
ENSG00000196547 E060 32.8207566 0.0181026269 7.107712e-03 2.150430e-02 15 90913407 90913613 207 + 1.648 1.416 -0.793
ENSG00000196547 E061 110.6873836 0.0031518021 5.498952e-01 6.795919e-01 15 90913614 90913755 142 + 2.048 2.027 -0.068
ENSG00000196547 E062 2.7063043 0.0842904288 5.414031e-01 6.723968e-01 15 90915418 90915496 79 + 0.636 0.516 -0.545
ENSG00000196547 E063 1.5875982 0.0413394240 2.730108e-02 6.660538e-02 15 90915995 90916067 73 + 0.596 0.198 -2.354
ENSG00000196547 E064 1.4662718 0.2918147836 4.111192e-01 5.547110e-01 15 90916068 90916100 33 + 0.506 0.274 -1.323
ENSG00000196547 E065 1.6124886 0.0442823271 3.369914e-01 4.808503e-01 15 90916101 90916122 22 + 0.506 0.333 -0.940
ENSG00000196547 E066 105.8660304 0.0002861009 2.114607e-01 3.402174e-01 15 90916123 90916256 134 + 1.984 2.033 0.164
ENSG00000196547 E067 4.6511433 0.0037781923 7.307642e-02 1.484527e-01 15 90916527 90916585 59 + 0.861 0.620 -0.985
ENSG00000196547 E068 6.9439018 0.0023434470 8.175013e-02 1.622966e-01 15 90916586 90916660 75 + 0.993 0.791 -0.773
ENSG00000196547 E069 4.5360604 0.0048079932 7.445434e-02 1.506590e-01 15 90917652 90917843 192 + 0.861 0.619 -0.986
ENSG00000196547 E070 69.2213645 0.0006061743 4.696415e-01 6.088730e-01 15 90918194 90918234 41 + 1.814 1.850 0.123
ENSG00000196547 E071 133.6991399 0.0003468465 1.906769e-01 3.146042e-01 15 90918235 90918388 154 + 2.085 2.131 0.157
ENSG00000196547 E072 2.8192858 0.0234728112 9.864352e-02 1.884225e-01 15 90918389 90918644 256 + 0.704 0.436 -1.228
ENSG00000196547 E073 115.4184186 0.0027383163 7.891479e-01 8.650167e-01 15 90918645 90918733 89 + 2.052 2.049 -0.011
ENSG00000196547 E074 76.5553266 0.0032981422 6.820562e-01 7.856060e-01 15 90918734 90918755 22 + 1.882 1.869 -0.042
ENSG00000196547 E075 200.8373838 0.0004341882 2.910004e-01 4.318199e-01 15 90919635 90919865 231 + 2.270 2.303 0.112
ENSG00000196547 E076 224.5983319 0.0002267581 2.044740e-04 9.831724e-04 15 90919866 90920110 245 + 2.277 2.374 0.323
ENSG00000196547 E077 569.7147892 0.0011712503 1.286226e-21 9.833398e-20 15 90920111 90920998 888 + 2.605 2.815 0.697
ENSG00000196547 E078 224.0530102 0.0019853483 1.384017e-08 1.662057e-07 15 90920999 90922584 1586 + 2.215 2.405 0.635