ENSG00000196535

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000529578 ENSG00000196535 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO18A protein_coding processed_transcript 5.707905 8.726333 3.358398 0.1723482 0.3380258 -1.374965 1.2823579 3.5023605 0.0000000 0.3189911 0.00000000 -8.456297 0.16040833 0.40310000 0.0000000 -0.40310000 4.673926e-18 4.673926e-18 FALSE TRUE
ENST00000530254 ENSG00000196535 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO18A protein_coding nonsense_mediated_decay 5.707905 8.726333 3.358398 0.1723482 0.3380258 -1.374965 1.1065390 2.5379004 0.0000000 0.2783266 0.00000000 -7.993165 0.14639583 0.29133333 0.0000000 -0.29133333 6.891522e-16 4.673926e-18 FALSE TRUE
ENST00000531253 ENSG00000196535 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO18A protein_coding protein_coding 5.707905 8.726333 3.358398 0.1723482 0.3380258 -1.374965 1.3896341 0.8065078 1.9136804 0.4370172 0.06784194 1.236330 0.32098333 0.09053333 0.5774333 0.48690000 7.947858e-02 4.673926e-18 FALSE TRUE
ENST00000546105 ENSG00000196535 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO18A protein_coding processed_transcript 5.707905 8.726333 3.358398 0.1723482 0.3380258 -1.374965 0.3756180 0.0000000 0.5483371 0.0000000 0.27552461 5.803065 0.08303333 0.00000000 0.1531000 0.15310000 8.299712e-02 4.673926e-18 FALSE TRUE
MSTRG.14005.10 ENSG00000196535 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO18A protein_coding   5.707905 8.726333 3.358398 0.1723482 0.3380258 -1.374965 0.6571305 1.0241537 0.3506594 0.1236089 0.11610281 -1.519742 0.12036250 0.11766667 0.1067000 -0.01096667 8.674247e-01 4.673926e-18 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000196535 E001 6.7302272 0.0029215553 8.066732e-01 8.771772e-01 17 29071122 29073516 2395 - 0.863 0.823 -0.157
ENSG00000196535 E002 0.3697384 0.0274424043 5.984122e-01 7.200125e-01 17 29073517 29073518 2 - 0.000 0.147 12.120
ENSG00000196535 E003 0.3697384 0.0274424043 5.984122e-01 7.200125e-01 17 29073519 29073520 2 - 0.000 0.147 12.120
ENSG00000196535 E004 179.5835705 0.0029012547 6.598513e-08 6.941739e-07 17 29073521 29074480 960 - 2.021 2.231 0.702
ENSG00000196535 E005 92.2129353 0.0003432995 4.492473e-04 1.963922e-03 17 29074481 29074747 267 - 1.788 1.931 0.483
ENSG00000196535 E006 64.2505794 0.0005192426 2.288267e-02 5.749789e-02 17 29074748 29074828 81 - 1.664 1.772 0.365
ENSG00000196535 E007 48.5071846 0.0004929098 1.920395e-02 4.977875e-02 17 29074829 29074858 30 - 1.526 1.655 0.442
ENSG00000196535 E008 51.1622033 0.0006652673 1.413545e-01 2.498922e-01 17 29074859 29074914 56 - 1.589 1.663 0.253
ENSG00000196535 E009 17.7290797 0.0010951020 6.828333e-01 7.861993e-01 17 29074915 29078857 3943 - 1.237 1.191 -0.162
ENSG00000196535 E010 6.3250870 0.0028064450 9.491120e-01 9.721067e-01 17 29079727 29081000 1274 - 0.796 0.796 0.001
ENSG00000196535 E011 63.9747932 0.0044891363 3.545489e-01 4.988653e-01 17 29082316 29082438 123 - 1.711 1.755 0.151
ENSG00000196535 E012 15.6657920 0.0015953493 1.955654e-02 5.053193e-02 17 29085604 29085648 45 - 0.973 1.208 0.849
ENSG00000196535 E013 39.1031170 0.0079852229 1.370044e-01 2.439157e-01 17 29086438 29086459 22 - 1.459 1.565 0.362
ENSG00000196535 E014 56.4693389 0.0004512215 1.036464e-01 1.960492e-01 17 29086460 29086571 112 - 1.633 1.711 0.265
ENSG00000196535 E015 26.8575155 0.0007570644 5.875246e-01 7.107902e-01 17 29086572 29086577 6 - 1.353 1.384 0.109
ENSG00000196535 E016 0.1817044 0.0393208719 1.000000e+00   17 29086578 29086624 47 - 0.000 0.080 11.096
ENSG00000196535 E017 0.1472490 0.0420631894 1.891062e-01   17 29086625 29086801 177 - 0.183 0.000 -13.832
ENSG00000196535 E018 76.8642415 0.0003950156 3.835249e-01 5.277322e-01 17 29086936 29087121 186 - 1.802 1.832 0.101
ENSG00000196535 E019 60.3423560 0.0004083033 1.737148e-01 2.930155e-01 17 29089961 29090098 138 - 1.674 1.735 0.206
ENSG00000196535 E020 0.0000000       17 29090099 29090160 62 -      
ENSG00000196535 E021 41.5777473 0.0006057990 9.059426e-03 2.642601e-02 17 29090532 29090615 84 - 1.435 1.595 0.547
ENSG00000196535 E022 45.0423365 0.0006590394 1.166963e-02 3.274738e-02 17 29090810 29090926 117 - 1.475 1.623 0.506
ENSG00000196535 E023 0.2214452 0.0383726474 1.000000e+00   17 29090927 29091038 112 - 0.000 0.080 11.103
ENSG00000196535 E024 0.0000000       17 29091039 29091519 481 -      
ENSG00000196535 E025 0.1472490 0.0420631894 1.891062e-01   17 29091630 29091849 220 - 0.183 0.000 -13.832
ENSG00000196535 E026 47.5075996 0.0005515794 1.067580e-01 2.007642e-01 17 29092343 29092456 114 - 1.545 1.631 0.293
ENSG00000196535 E027 50.8489356 0.0004963878 5.122198e-01 6.471377e-01 17 29092855 29093001 147 - 1.623 1.649 0.091
ENSG00000196535 E028 46.2253911 0.0005305018 5.092016e-02 1.108049e-01 17 29093323 29093427 105 - 1.526 1.633 0.367
ENSG00000196535 E029 23.6888141 0.0098919458 5.834302e-02 1.237867e-01 17 29093980 29093980 1 - 1.196 1.367 0.603
ENSG00000196535 E030 50.0742990 0.0005362754 6.468490e-03 1.984052e-02 17 29093981 29094090 110 - 1.519 1.670 0.517
ENSG00000196535 E031 0.0000000       17 29094243 29094331 89 -      
ENSG00000196535 E032 56.8138967 0.0037497218 5.211843e-01 6.550704e-01 17 29094650 29094850 201 - 1.669 1.699 0.102
ENSG00000196535 E033 33.6505475 0.0131888127 6.635064e-01 7.715420e-01 17 29094936 29095059 124 - 1.443 1.475 0.108
ENSG00000196535 E034 35.7218663 0.0134191751 3.721602e-01 5.166158e-01 17 29096761 29096900 140 - 1.443 1.509 0.225
ENSG00000196535 E035 18.0023170 0.0044067238 8.054651e-02 1.604095e-01 17 29096901 29096915 15 - 1.080 1.245 0.589
ENSG00000196535 E036 1.2533594 0.0132764242 7.061379e-03 2.138461e-02 17 29096916 29097222 307 - 0.618 0.147 -2.964
ENSG00000196535 E037 40.6012308 0.0035312383 6.246444e-02 1.307924e-01 17 29097223 29097350 128 - 1.452 1.573 0.417
ENSG00000196535 E038 0.2214452 0.0383726474 1.000000e+00   17 29097351 29097353 3 - 0.000 0.080 11.103
ENSG00000196535 E039 40.5975678 0.0029704397 8.522479e-01 9.084259e-01 17 29097788 29097899 112 - 1.565 1.544 -0.072
ENSG00000196535 E040 40.5901270 0.0012453565 9.033169e-01 9.424741e-01 17 29098105 29098224 120 - 1.545 1.544 -0.006
ENSG00000196535 E041 21.5569603 0.0059729090 3.875846e-01 5.317234e-01 17 29098356 29098370 15 - 1.224 1.294 0.247
ENSG00000196535 E042 33.9644245 0.0042717040 7.961684e-01 8.698674e-01 17 29098371 29098445 75 - 1.467 1.476 0.030
ENSG00000196535 E043 38.9995516 0.0006357885 7.069870e-01 8.050266e-01 17 29098826 29098969 144 - 1.558 1.525 -0.114
ENSG00000196535 E044 24.9677571 0.0034332614 1.140946e-01 2.114938e-01 17 29099634 29099762 129 - 1.452 1.321 -0.454
ENSG00000196535 E045 17.3432569 0.0012479045 1.603746e-03 5.973397e-03 17 29103599 29103664 66 - 1.391 1.117 -0.964
ENSG00000196535 E046 20.4347968 0.0010852248 1.322208e-02 3.642938e-02 17 29107080 29107189 110 - 1.409 1.202 -0.724
ENSG00000196535 E047 0.3268771 0.0286767937 4.964136e-01   17 29107190 29107667 478 - 0.183 0.080 -1.378
ENSG00000196535 E048 24.2406566 0.0054343964 1.177104e-01 2.166741e-01 17 29109858 29110101 244 - 1.427 1.289 -0.477
ENSG00000196535 E049 18.7171363 0.0024744242 1.010583e-01 1.920781e-01 17 29110436 29110622 187 - 1.332 1.180 -0.532
ENSG00000196535 E050 22.2711246 0.0029338367 5.964635e-03 1.851398e-02 17 29111424 29111583 160 - 1.467 1.243 -0.779
ENSG00000196535 E051 13.9399221 0.0153396620 3.119542e-02 7.428110e-02 17 29111722 29111785 64 - 1.287 1.049 -0.848
ENSG00000196535 E052 13.7498118 0.0108232866 2.077297e-02 5.310829e-02 17 29111786 29111863 78 - 1.287 1.042 -0.874
ENSG00000196535 E053 16.9894847 0.0274062233 1.191800e-01 2.187691e-01 17 29114011 29114097 87 - 1.332 1.144 -0.661
ENSG00000196535 E054 0.0000000       17 29114098 29114268 171 -      
ENSG00000196535 E055 26.6028809 0.0007330552 1.346743e-01 2.406465e-01 17 29114907 29115099 193 - 1.460 1.342 -0.406
ENSG00000196535 E056 10.4002199 0.0029945529 8.309374e-01 8.940124e-01 17 29115351 29115352 2 - 1.019 0.986 -0.122
ENSG00000196535 E057 19.2209525 0.0012905435 6.814959e-02 1.402960e-01 17 29115353 29115441 89 - 1.353 1.191 -0.566
ENSG00000196535 E058 21.0032316 0.0067811376 1.938048e-03 7.034745e-03 17 29115664 29115840 177 - 1.460 1.187 -0.950
ENSG00000196535 E059 5.7394175 0.1162117406 3.540173e-01 4.982984e-01 17 29116444 29116455 12 - 0.894 0.712 -0.716
ENSG00000196535 E060 0.2966881 0.0297075532 4.736155e-02   17 29118031 29118044 14 - 0.312 0.000 -14.903
ENSG00000196535 E061 20.0426429 0.0430039020 5.150974e-01 6.498039e-01 17 29118045 29118189 145 - 1.321 1.236 -0.298
ENSG00000196535 E062 13.9366842 0.0105345206 3.171939e-01 4.600477e-01 17 29118377 29118440 64 - 1.196 1.083 -0.405
ENSG00000196535 E063 17.0773319 0.0011109185 1.857377e-01 3.084251e-01 17 29119335 29119435 101 - 1.287 1.162 -0.442
ENSG00000196535 E064 21.1384723 0.0019556606 1.295300e-03 4.960308e-03 17 29120616 29120758 143 - 1.460 1.197 -0.916
ENSG00000196535 E065 10.1882924 0.0017405686 1.125323e-02 3.176995e-02 17 29120998 29121029 32 - 1.181 0.906 -1.005
ENSG00000196535 E066 13.1710936 0.0014273260 3.804577e-02 8.743760e-02 17 29121030 29121109 80 - 1.237 1.029 -0.748
ENSG00000196535 E067 13.6327520 0.0127138471 1.401989e-03 5.313326e-03 17 29121110 29121211 102 - 1.332 0.987 -1.231
ENSG00000196535 E068 16.5650059 0.0056285836 1.419668e-03 5.372054e-03 17 29121547 29121723 177 - 1.382 1.084 -1.054
ENSG00000196535 E069 0.0000000       17 29121724 29121850 127 -      
ENSG00000196535 E070 6.1936611 0.0063192627 2.195743e-01 3.498751e-01 17 29121851 29121852 2 - 0.922 0.751 -0.663
ENSG00000196535 E071 15.9028446 0.0076041143 8.324885e-03 2.460451e-02 17 29121853 29121924 72 - 1.342 1.084 -0.917
ENSG00000196535 E072 12.5937166 0.0510403081 7.454768e-02 1.508141e-01 17 29121925 29121957 33 - 1.250 0.990 -0.933
ENSG00000196535 E073 18.8355060 0.0061550545 4.937538e-06 3.518135e-05 17 29122166 29122253 88 - 1.497 1.097 -1.402
ENSG00000196535 E074 0.0000000       17 29124653 29124688 36 -      
ENSG00000196535 E075 0.3289534 0.0281943035 4.970725e-01   17 29125893 29125967 75 - 0.183 0.080 -1.378
ENSG00000196535 E076 0.2987644 0.0290785164 4.745957e-02   17 29127852 29128544 693 - 0.312 0.000 -14.909
ENSG00000196535 E077 0.0000000       17 29131383 29131435 53 -      
ENSG00000196535 E078 0.0000000       17 29133761 29133793 33 -      
ENSG00000196535 E079 0.0000000       17 29133794 29133858 65 -      
ENSG00000196535 E080 0.0000000       17 29133859 29133939 81 -      
ENSG00000196535 E081 0.0000000       17 29137016 29137084 69 -      
ENSG00000196535 E082 0.2955422 0.0287105001 4.958572e-01   17 29140340 29140422 83 - 0.183 0.080 -1.381
ENSG00000196535 E083 0.0000000       17 29165388 29165511 124 -      
ENSG00000196535 E084 62.8132660 0.0215754392 1.322337e-07 1.312547e-06 17 29165942 29167021 1080 - 2.019 1.586 -1.462
ENSG00000196535 E085 0.0000000       17 29169482 29169507 26 -      
ENSG00000196535 E086 0.6759915 0.6081683418 2.507098e-01 3.867770e-01 17 29176572 29176752 181 - 0.413 0.083 -2.923
ENSG00000196535 E087 7.0667445 0.0027047995 1.439320e-01 2.533682e-01 17 29180313 29180398 86 - 0.973 0.782 -0.734