ENSG00000196498

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000404121 ENSG00000196498 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR2 protein_coding protein_coding 22.22822 30.8201 14.52993 1.797555 0.630805 -1.08432 5.2852388 11.5617566 0.28452743 0.6444851 0.28452743 -5.2960621 0.20358333 0.37673333 0.019333333 -0.35740000 0.0082368844 6.64336e-05 FALSE TRUE
ENST00000404621 ENSG00000196498 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR2 protein_coding protein_coding 22.22822 30.8201 14.52993 1.797555 0.630805 -1.08432 1.3295489 1.0436872 0.90405809 0.4307088 0.40737521 -0.2050889 0.06227083 0.03300000 0.059966667 0.02696667 0.7697707857 6.64336e-05 FALSE TRUE
ENST00000405201 ENSG00000196498 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR2 protein_coding protein_coding 22.22822 30.8201 14.52993 1.797555 0.630805 -1.08432 4.5541169 5.8624682 3.79348768 0.7747236 0.35412874 -0.6266441 0.20953333 0.18896667 0.260433333 0.07146667 0.1424492161 6.64336e-05 FALSE TRUE
ENST00000418829 ENSG00000196498 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR2 protein_coding protein_coding 22.22822 30.8201 14.52993 1.797555 0.630805 -1.08432 0.8575039 2.2213301 0.06815946 0.2188739 0.06815946 -4.8353398 0.03054583 0.07253333 0.004633333 -0.06790000 0.0075199365 6.64336e-05 FALSE TRUE
ENST00000443451 ENSG00000196498 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR2 protein_coding retained_intron 22.22822 30.8201 14.52993 1.797555 0.630805 -1.08432 1.7005047 3.4570119 0.90386311 0.2254956 0.16084563 -1.9236428 0.07003333 0.11260000 0.061900000 -0.05070000 0.0264540326 6.64336e-05 FALSE TRUE
MSTRG.8277.15 ENSG00000196498 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR2 protein_coding   22.22822 30.8201 14.52993 1.797555 0.630805 -1.08432 0.4478617 0.0000000 0.75677723 0.0000000 0.38938487 6.2607356 0.02642083 0.00000000 0.054400000 0.05440000 0.1232483522 6.64336e-05 FALSE TRUE
MSTRG.8277.24 ENSG00000196498 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR2 protein_coding   22.22822 30.8201 14.52993 1.797555 0.630805 -1.08432 0.6866556 0.9279917 1.22610078 0.1617036 0.14173776 0.3981494 0.03150417 0.02970000 0.083833333 0.05413333 0.0000664336 6.64336e-05 FALSE TRUE
MSTRG.8277.4 ENSG00000196498 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR2 protein_coding   22.22822 30.8201 14.52993 1.797555 0.630805 -1.08432 2.0847921 1.4878584 3.13156694 0.5716917 0.58672600 1.0685830 0.10571250 0.04660000 0.219800000 0.17320000 0.0034567776 6.64336e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000196498 E001 3.7484437 0.0042547084 8.941742e-01 9.363490e-01 12 124324415 124324415 1 - 0.614 0.660 0.201
ENSG00000196498 E002 265.9141167 0.0148947552 4.041997e-09 5.355978e-08 12 124324416 124324597 182 - 2.055 2.484 1.435
ENSG00000196498 E003 764.4413068 0.0101317962 5.889329e-12 1.271761e-10 12 124324598 124325379 782 - 2.553 2.935 1.270
ENSG00000196498 E004 14.1458432 0.0072297714 5.283465e-07 4.651624e-06 12 124325380 124325385 6 - 0.564 1.256 2.674
ENSG00000196498 E005 9.6223401 0.0219815743 2.744302e-03 9.504915e-03 12 124325386 124325396 11 - 0.614 1.088 1.854
ENSG00000196498 E006 7.6296083 0.0126178170 1.925307e-02 4.988493e-02 12 124325397 124325398 2 - 0.614 0.982 1.467
ENSG00000196498 E007 10.1591490 0.0017728973 3.336792e-03 1.125394e-02 12 124325399 124325408 10 - 0.699 1.095 1.517
ENSG00000196498 E008 18.3464592 0.0010510032 6.356527e-03 1.954911e-02 12 124325409 124325419 11 - 1.033 1.318 1.017
ENSG00000196498 E009 26.3434929 0.0007194427 2.965333e-03 1.015975e-02 12 124325420 124325430 11 - 1.195 1.461 0.928
ENSG00000196498 E010 173.4002191 0.0004458841 1.765853e-14 5.611129e-13 12 124325431 124325583 153 - 1.983 2.271 0.964
ENSG00000196498 E011 0.4448795 0.6698914522 5.408395e-01 6.719201e-01 12 124326123 124326179 57 - 0.000 0.222 15.497
ENSG00000196498 E012 3.4849909 0.1511389318 1.675495e-01 2.850014e-01 12 124326180 124326190 11 - 0.368 0.715 1.652
ENSG00000196498 E013 272.6132767 0.0049971350 1.471304e-08 1.758575e-07 12 124326191 124326370 180 - 2.190 2.469 0.934
ENSG00000196498 E014 170.8015380 0.0096997178 2.356135e-05 1.437329e-04 12 124327409 124327546 138 - 1.984 2.268 0.951
ENSG00000196498 E015 172.1005400 0.0013557074 2.074495e-07 1.982680e-06 12 124327547 124327633 87 - 2.036 2.256 0.737
ENSG00000196498 E016 1.7778343 0.1118833821 2.212554e-01 3.519387e-01 12 124327634 124327659 26 - 0.564 0.340 -1.167
ENSG00000196498 E017 5.3497872 0.0585556124 4.483836e-02 9.990348e-02 12 124328532 124329157 626 - 0.955 0.661 -1.163
ENSG00000196498 E018 199.2887816 0.0002365261 1.572792e-09 2.249100e-08 12 124330845 124330898 54 - 2.105 2.315 0.705
ENSG00000196498 E019 3.0311635 0.1232001145 8.058170e-01 8.765481e-01 12 124331475 124332318 844 - 0.564 0.567 0.010
ENSG00000196498 E020 274.1725434 0.0011946736 3.844569e-05 2.225440e-04 12 124332319 124332464 146 - 2.285 2.441 0.522
ENSG00000196498 E021 94.3979350 0.0017891372 2.146623e-03 7.679852e-03 12 124332465 124332467 3 - 1.804 1.982 0.598
ENSG00000196498 E022 239.3775764 0.0041161124 9.861732e-05 5.153721e-04 12 124333130 124333279 150 - 2.195 2.394 0.665
ENSG00000196498 E023 0.9253484 0.0566679397 9.861811e-01 9.953599e-01 12 124334344 124334423 80 - 0.276 0.289 0.088
ENSG00000196498 E024 186.7893717 0.0131840325 4.133657e-03 1.351656e-02 12 124334424 124334617 194 - 2.067 2.294 0.760
ENSG00000196498 E025 4.8650389 0.0032869284 2.546385e-02 6.283278e-02 12 124334618 124335134 517 - 0.909 0.637 -1.092
ENSG00000196498 E026 144.2745149 0.0003341571 3.567183e-06 2.626145e-05 12 124335135 124335280 146 - 1.975 2.168 0.649
ENSG00000196498 E027 166.9477196 0.0021961385 5.176956e-03 1.640943e-02 12 124335483 124335632 150 - 2.081 2.224 0.478
ENSG00000196498 E028 6.1292958 0.0070652470 1.677697e-03 6.211590e-03 12 124335633 124336392 760 - 1.033 0.661 -1.449
ENSG00000196498 E029 235.6416703 0.0001939685 2.541755e-02 6.274061e-02 12 124336753 124337103 351 - 2.266 2.358 0.306
ENSG00000196498 E030 98.5222065 0.0003154255 2.192280e-01 3.494390e-01 12 124337104 124337180 77 - 1.899 1.981 0.276
ENSG00000196498 E031 52.6779034 0.0023383266 1.402797e-01 2.484070e-01 12 124340006 124340006 1 - 1.603 1.723 0.407
ENSG00000196498 E032 154.8572099 0.0002439979 3.056836e-02 7.308468e-02 12 124340007 124340204 198 - 2.076 2.179 0.344
ENSG00000196498 E033 167.3796112 0.0009585892 5.652431e-01 6.923673e-01 12 124340294 124340443 150 - 2.144 2.199 0.184
ENSG00000196498 E034 114.8098340 0.0054832134 6.694856e-01 7.762961e-01 12 124340602 124340694 93 - 1.977 2.040 0.214
ENSG00000196498 E035 84.2898554 0.0041807658 7.704600e-01 8.517719e-01 12 124340695 124340751 57 - 1.850 1.904 0.181
ENSG00000196498 E036 155.1079827 0.0066806510 8.525961e-01 9.086662e-01 12 124341823 124342074 252 - 2.118 2.170 0.172
ENSG00000196498 E037 132.7023835 0.0010929935 9.527413e-01 9.743948e-01 12 124343005 124343226 222 - 2.060 2.097 0.125
ENSG00000196498 E038 200.9889855 0.0073979975 1.309293e-01 2.354363e-01 12 124344597 124344951 355 - 2.284 2.258 -0.086
ENSG00000196498 E039 65.0070887 0.0032409928 3.609596e-01 5.053268e-01 12 124346564 124346592 29 - 1.782 1.771 -0.039
ENSG00000196498 E040 164.9205824 0.0051280551 1.309160e-01 2.354272e-01 12 124346593 124346850 258 - 2.196 2.172 -0.082
ENSG00000196498 E041 2.6477362 0.0060963803 6.241509e-02 1.307124e-01 12 124347402 124347824 423 - 0.699 0.426 -1.260
ENSG00000196498 E042 107.6485463 0.0002682963 2.261495e-03 8.034685e-03 12 124347825 124347911 87 - 2.046 1.970 -0.256
ENSG00000196498 E043 133.1498658 0.0002643437 3.108882e-02 7.407847e-02 12 124348174 124348314 141 - 2.112 2.075 -0.124
ENSG00000196498 E044 0.5244761 0.2701636375 3.135640e-01 4.561729e-01 12 124348315 124348940 626 - 0.277 0.094 -1.878
ENSG00000196498 E045 156.1473800 0.0045737168 5.444084e-03 1.713744e-02 12 124350587 124350737 151 - 2.213 2.130 -0.275
ENSG00000196498 E046 132.3736937 0.0046394573 1.155157e-02 3.246947e-02 12 124354093 124354196 104 - 2.138 2.061 -0.259
ENSG00000196498 E047 110.1317770 0.0041533964 5.012449e-02 1.093876e-01 12 124354478 124354582 105 - 2.041 1.989 -0.175
ENSG00000196498 E048 122.9892573 0.0089705243 1.910376e-01 3.150539e-01 12 124354837 124354939 103 - 2.071 2.045 -0.088
ENSG00000196498 E049 0.5514428 0.0196177238 2.554506e-01 3.923336e-01 12 124355059 124355431 373 - 0.000 0.234 15.599
ENSG00000196498 E050 116.6919548 0.0065925268 4.459250e-02 9.944925e-02 12 124355432 124355571 140 - 2.073 2.011 -0.207
ENSG00000196498 E051 73.4825396 0.0068182078 9.310333e-02 1.799774e-01 12 124356642 124356782 141 - 1.873 1.813 -0.205
ENSG00000196498 E052 22.4718210 0.0008352999 9.210574e-01 9.541784e-01 12 124356783 124356803 21 - 1.313 1.337 0.085
ENSG00000196498 E053 10.0907326 0.0357330501 4.125638e-01 5.561237e-01 12 124356804 124356806 3 - 0.909 1.052 0.533
ENSG00000196498 E054 0.9211812 0.0136968632 8.980872e-02 1.748288e-01 12 124356807 124356850 44 - 0.000 0.341 16.336
ENSG00000196498 E055 66.4677611 0.0007155338 1.242265e-01 2.260157e-01 12 124362126 124362294 169 - 1.813 1.774 -0.130
ENSG00000196498 E056 15.0180341 0.0012290631 7.292911e-01 8.215078e-01 12 124362295 124362297 3 - 1.114 1.178 0.230
ENSG00000196498 E057 70.9244403 0.0023409842 5.261506e-02 1.138107e-01 12 124363679 124363799 121 - 1.855 1.795 -0.203
ENSG00000196498 E058 130.4236434 0.0028337471 6.401597e-03 1.966697e-02 12 124372022 124372459 438 - 2.128 2.054 -0.247
ENSG00000196498 E059 47.7319928 0.0083368742 2.521496e-01 3.884762e-01 12 124372460 124372610 151 - 1.682 1.639 -0.146
ENSG00000196498 E060 9.9648461 0.0019180170 1.719842e-02 4.538120e-02 12 124374413 124374463 51 - 1.143 0.924 -0.802
ENSG00000196498 E061 82.2927682 0.0003644271 4.000941e-04 1.774723e-03 12 124378237 124378384 148 - 1.951 1.840 -0.374
ENSG00000196498 E062 94.2831300 0.0012719473 1.753013e-04 8.581920e-04 12 124385745 124385887 143 - 2.016 1.896 -0.400
ENSG00000196498 E063 0.0000000       12 124388685 124388824 140 -      
ENSG00000196498 E064 78.7419767 0.0009048802 1.671341e-03 6.191084e-03 12 124398119 124398181 63 - 1.932 1.830 -0.343
ENSG00000196498 E065 127.9606604 0.0005659108 3.545994e-08 3.934739e-07 12 124400501 124400673 173 - 2.171 2.019 -0.506
ENSG00000196498 E066 112.9152408 0.0011303698 3.881940e-09 5.160493e-08 12 124402404 124402558 155 - 2.137 1.952 -0.617
ENSG00000196498 E067 26.9062272 0.0009412571 2.755123e-04 1.280010e-03 12 124402559 124402561 3 - 1.547 1.332 -0.739
ENSG00000196498 E068 41.7636758 0.0036038156 1.763921e-06 1.388612e-05 12 124419957 124419958 2 - 1.756 1.499 -0.875
ENSG00000196498 E069 95.9661129 0.0007299193 2.768520e-14 8.528257e-13 12 124419959 124420055 97 - 2.106 1.850 -0.861
ENSG00000196498 E070 84.0078144 0.0005085763 1.295264e-11 2.648504e-10 12 124422501 124422555 55 - 2.036 1.798 -0.799
ENSG00000196498 E071 87.8976002 0.0003566627 5.073055e-15 1.744118e-13 12 124426622 124426686 65 - 2.073 1.804 -0.903
ENSG00000196498 E072 92.5325073 0.0063210508 1.217763e-07 1.217037e-06 12 124426687 124426800 114 - 2.083 1.842 -0.809
ENSG00000196498 E073 1.3212103 0.0106240761 2.592944e-01 3.966888e-01 12 124429395 124429612 218 - 0.160 0.386 1.689
ENSG00000196498 E074 72.4490570 0.0037485690 4.454309e-05 2.540586e-04 12 124429613 124429703 91 - 1.936 1.763 -0.581
ENSG00000196498 E075 32.8267167 0.0006406566 3.452462e-04 1.561008e-03 12 124429704 124429706 3 - 1.613 1.423 -0.649
ENSG00000196498 E076 0.0000000       12 124430610 124430614 5 -      
ENSG00000196498 E077 48.2090068 0.0005006533 1.423118e-03 5.383604e-03 12 124430615 124430640 26 - 1.742 1.608 -0.454
ENSG00000196498 E078 58.9444039 0.0004000344 1.967288e-05 1.222518e-04 12 124430641 124430685 45 - 1.847 1.679 -0.569
ENSG00000196498 E079 81.4508755 0.0003737761 3.081723e-06 2.299421e-05 12 124430686 124430784 99 - 1.977 1.820 -0.526
ENSG00000196498 E080 43.9858729 0.0005241961 3.180561e-05 1.880787e-04 12 124430785 124430787 3 - 1.735 1.542 -0.655
ENSG00000196498 E081 76.7533461 0.0051120605 4.280585e-07 3.837153e-06 12 124437930 124437996 67 - 1.996 1.765 -0.780
ENSG00000196498 E082 68.1218807 0.0113727532 3.096362e-05 1.836328e-04 12 124449815 124449867 53 - 1.951 1.711 -0.810
ENSG00000196498 E083 51.0948584 0.0111369322 2.069477e-04 9.937297e-04 12 124457106 124457159 54 - 1.821 1.597 -0.760
ENSG00000196498 E084 29.8783589 0.0013300708 4.901152e-05 2.767619e-04 12 124457160 124457162 3 - 1.598 1.365 -0.801
ENSG00000196498 E085 84.0975269 0.0027123257 1.154428e-11 2.378499e-10 12 124466173 124466286 114 - 2.060 1.785 -0.924
ENSG00000196498 E086 103.3743921 0.0064197186 4.807245e-08 5.205888e-07 12 124472952 124473131 180 - 2.131 1.889 -0.814
ENSG00000196498 E087 98.6777529 0.0053404927 4.390432e-07 3.927444e-06 12 124483596 124483773 178 - 2.095 1.881 -0.718
ENSG00000196498 E088 0.4847352 0.2639897329 3.097828e-01 4.521241e-01 12 124483774 124483774 1 - 0.277 0.093 -1.900
ENSG00000196498 E089 0.1482932 0.0430660439 1.000000e+00   12 124486374 124486440 67 - 0.000 0.093 14.010
ENSG00000196498 E090 83.6458652 0.0003540770 8.453301e-11 1.510804e-09 12 124486441 124486568 128 - 2.028 1.804 -0.754
ENSG00000196498 E091 84.3958870 0.0116733836 2.089675e-06 1.619019e-05 12 124495147 124495368 222 - 2.064 1.791 -0.920
ENSG00000196498 E092 2.5913074 0.0547694413 4.385488e-01 5.804210e-01 12 124518140 124518294 155 - 0.614 0.496 -0.546
ENSG00000196498 E093 13.1977951 0.0120075928 2.978334e-05 1.773826e-04 12 124535565 124535611 47 - 1.349 0.949 -1.434
ENSG00000196498 E094 25.4181889 0.0402438307 1.599997e-06 1.271134e-05 12 124567308 124567603 296 - 1.683 1.139 -1.884