ENSG00000196367

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000355540 ENSG00000196367 HEK293_OSMI2_2hA HEK293_TMG_2hB TRRAP protein_coding protein_coding 18.95895 19.8099 17.07536 1.770856 0.6249874 -0.214189 4.4499834 3.1488176 6.1411928 0.6768078 0.7283122 0.9614816 0.24130000 0.157400000 0.35843333 0.20103333 4.081853e-03 1.726059e-09 FALSE TRUE
ENST00000359863 ENSG00000196367 HEK293_OSMI2_2hA HEK293_TMG_2hB TRRAP protein_coding protein_coding 18.95895 19.8099 17.07536 1.770856 0.6249874 -0.214189 1.8207063 2.2121251 1.0149263 0.1617385 0.1842928 -1.1164199 0.09394167 0.112333333 0.05966667 -0.05266667 3.259623e-02 1.726059e-09 FALSE TRUE
ENST00000360902 ENSG00000196367 HEK293_OSMI2_2hA HEK293_TMG_2hB TRRAP protein_coding nonsense_mediated_decay 18.95895 19.8099 17.07536 1.770856 0.6249874 -0.214189 2.4642330 6.9150978 0.0000000 2.1878527 0.0000000 -9.4356906 0.12317083 0.354333333 0.00000000 -0.35433333 1.726059e-09 1.726059e-09 TRUE TRUE
ENST00000446306 ENSG00000196367 HEK293_OSMI2_2hA HEK293_TMG_2hB TRRAP protein_coding protein_coding 18.95895 19.8099 17.07536 1.770856 0.6249874 -0.214189 1.5549122 1.2615440 0.1781961 0.8051615 0.1781961 -2.7562725 0.07702083 0.063466667 0.01056667 -0.05290000 2.120301e-01 1.726059e-09 FALSE TRUE
ENST00000456197 ENSG00000196367 HEK293_OSMI2_2hA HEK293_TMG_2hB TRRAP protein_coding protein_coding 18.95895 19.8099 17.07536 1.770856 0.6249874 -0.214189 1.4433586 0.0000000 3.2456619 0.0000000 1.2111701 8.3468071 0.08469583 0.000000000 0.19200000 0.19200000 9.029670e-08 1.726059e-09 FALSE TRUE
MSTRG.30289.21 ENSG00000196367 HEK293_OSMI2_2hA HEK293_TMG_2hB TRRAP protein_coding   18.95895 19.8099 17.07536 1.770856 0.6249874 -0.214189 3.8861483 5.1100112 1.5321211 1.0831329 0.2700973 -1.7312309 0.18944583 0.255433333 0.08883333 -0.16660000 2.910948e-03 1.726059e-09 FALSE TRUE
MSTRG.30289.23 ENSG00000196367 HEK293_OSMI2_2hA HEK293_TMG_2hB TRRAP protein_coding   18.95895 19.8099 17.07536 1.770856 0.6249874 -0.214189 0.4225195 0.0000000 1.2639054 0.0000000 0.8114646 6.9931144 0.02549583 0.000000000 0.07593333 0.07593333 1.911562e-01 1.726059e-09 TRUE TRUE
MSTRG.30289.24 ENSG00000196367 HEK293_OSMI2_2hA HEK293_TMG_2hB TRRAP protein_coding   18.95895 19.8099 17.07536 1.770856 0.6249874 -0.214189 1.1459548 0.1994038 0.7685662 0.1994038 0.1493840 1.8945323 0.06358750 0.008766667 0.04576667 0.03700000 1.330035e-01 1.726059e-09 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000196367 E001 0.0000000       7 98877933 98877996 64 +      
ENSG00000196367 E002 0.0000000       7 98878083 98878292 210 +      
ENSG00000196367 E003 0.1472490 0.0425738365 5.080520e-01   7 98878449 98878489 41 + 0.116 0.000 -20.453
ENSG00000196367 E004 0.5891098 0.0184900107 4.097860e-02 9.284212e-02 7 98878490 98878503 14 + 0.348 0.000 -22.474
ENSG00000196367 E005 1.0308569 0.0135673353 4.477001e-03 1.447684e-02 7 98878504 98878520 17 + 0.498 0.000 -23.281
ENSG00000196367 E006 1.0308569 0.0135673353 4.477001e-03 1.447684e-02 7 98878521 98878522 2 + 0.498 0.000 -23.281
ENSG00000196367 E007 1.3974748 0.0107045345 1.677648e-02 4.444302e-02 7 98878523 98878531 9 + 0.538 0.129 -2.828
ENSG00000196367 E008 1.5489902 0.0083574635 8.911320e-03 2.606006e-02 7 98878532 98878540 9 + 0.575 0.129 -2.999
ENSG00000196367 E009 4.2490310 0.0095117228 3.161122e-06 2.353012e-05 7 98878541 98878545 5 + 0.953 0.228 -3.529
ENSG00000196367 E010 6.7738344 0.0123609844 7.456603e-07 6.366742e-06 7 98878546 98878556 11 + 1.113 0.436 -2.790
ENSG00000196367 E011 7.7004305 0.0076203679 1.258195e-07 1.253873e-06 7 98878557 98878562 6 + 1.161 0.488 -2.702
ENSG00000196367 E012 8.6121510 0.0025216026 1.304543e-08 1.574352e-07 7 98878563 98878570 8 + 1.205 0.534 -2.636
ENSG00000196367 E013 19.0712614 0.0139956599 2.954777e-11 5.696862e-10 7 98878571 98878611 41 + 1.529 0.859 -2.398
ENSG00000196367 E014 25.0999366 0.0179947094 6.686657e-11 1.214309e-09 7 98878612 98878637 26 + 1.633 1.002 -2.216
ENSG00000196367 E015 1.1093195 0.0113660714 5.595370e-02 1.196188e-01 7 98879010 98879080 71 + 0.453 0.129 -2.413
ENSG00000196367 E016 67.3203906 0.0250082931 7.728575e-13 1.932623e-11 7 98881090 98881250 161 + 2.049 1.432 -2.093
ENSG00000196367 E017 48.3894377 0.0008244943 1.795477e-34 4.235962e-32 7 98881975 98882024 50 + 1.919 1.237 -2.334
ENSG00000196367 E018 60.4654938 0.0020109188 8.734028e-29 1.321204e-26 7 98890335 98890445 111 + 1.990 1.420 -1.934
ENSG00000196367 E019 62.6270776 0.0190468889 2.315760e-10 3.834240e-09 7 98892424 98892528 105 + 1.987 1.499 -1.654
ENSG00000196367 E020 57.3458594 0.0271674451 7.133770e-07 6.115808e-06 7 98893798 98893881 84 + 1.930 1.512 -1.416
ENSG00000196367 E021 47.9827917 0.0091527299 2.019541e-10 3.381914e-09 7 98895764 98895820 57 + 1.853 1.439 -1.408
ENSG00000196367 E022 73.1023983 0.0176689978 1.556345e-10 2.657695e-09 7 98897741 98897866 126 + 2.047 1.586 -1.557
ENSG00000196367 E023 61.8831875 0.0115117492 3.853874e-13 1.008432e-11 7 98899422 98899499 78 + 1.981 1.500 -1.629
ENSG00000196367 E024 60.5774758 0.0454275186 2.174717e-07 2.070424e-06 7 98899679 98899767 89 + 1.989 1.447 -1.837
ENSG00000196367 E025 58.8045045 0.0550088656 9.753542e-06 6.501915e-05 7 98900624 98900720 97 + 1.962 1.478 -1.639
ENSG00000196367 E026 71.7960511 0.0466130805 7.304111e-05 3.948246e-04 7 98903379 98903517 139 + 2.021 1.632 -1.313
ENSG00000196367 E027 54.8447629 0.0353470176 8.042040e-04 3.273896e-03 7 98906177 98906255 79 + 1.872 1.581 -0.985
ENSG00000196367 E028 78.3176027 0.0271138729 3.366545e-05 1.977495e-04 7 98908728 98908962 235 + 2.036 1.713 -1.088
ENSG00000196367 E029 81.8935522 0.0094379416 4.031156e-09 5.343518e-08 7 98910056 98910419 364 + 2.055 1.729 -1.100
ENSG00000196367 E030 32.1250042 0.0025417956 1.409380e-10 2.425535e-09 7 98910510 98910512 3 + 1.681 1.278 -1.384
ENSG00000196367 E031 65.7569892 0.0331465246 1.091274e-05 7.187156e-05 7 98910513 98910607 95 + 1.981 1.595 -1.304
ENSG00000196367 E032 102.4819681 0.0242181596 4.146676e-08 4.546943e-07 7 98911077 98911271 195 + 2.181 1.764 -1.398
ENSG00000196367 E033 97.3093696 0.0391138368 3.272530e-06 2.429258e-05 7 98912022 98912213 192 + 2.160 1.739 -1.417
ENSG00000196367 E034 71.9733783 0.0377734629 7.007669e-04 2.901818e-03 7 98915723 98915831 109 + 1.989 1.699 -0.977
ENSG00000196367 E035 47.6838184 0.0305977161 3.254999e-04 1.482866e-03 7 98915832 98915888 57 + 1.818 1.509 -1.051
ENSG00000196367 E036 111.3360116 0.0189221966 3.777234e-06 2.764801e-05 7 98917423 98917679 257 + 2.181 1.877 -1.019
ENSG00000196367 E037 55.1505374 0.0178170575 2.134839e-05 1.315034e-04 7 98921753 98921816 64 + 1.876 1.577 -1.014
ENSG00000196367 E038 85.3235245 0.0029244425 1.321534e-10 2.286817e-09 7 98921817 98921953 137 + 2.049 1.783 -0.895
ENSG00000196367 E039 98.1726386 0.0085536521 6.919254e-08 7.248573e-07 7 98925112 98925263 152 + 2.113 1.839 -0.920
ENSG00000196367 E040 101.8002598 0.0005873269 3.893899e-19 2.253857e-17 7 98927167 98927366 200 + 2.138 1.837 -1.011
ENSG00000196367 E041 99.4958910 0.0003005080 3.597935e-15 1.263894e-13 7 98929989 98930206 218 + 2.112 1.858 -0.853
ENSG00000196367 E042 94.7197920 0.0124261919 2.433685e-04 1.147415e-03 7 98930633 98930830 198 + 2.070 1.874 -0.661
ENSG00000196367 E043 41.9630521 0.0118384665 8.052410e-04 3.277484e-03 7 98931405 98931420 16 + 1.731 1.516 -0.730
ENSG00000196367 E044 120.3726944 0.0066808517 2.987649e-06 2.236363e-05 7 98931421 98931665 245 + 2.176 1.974 -0.679
ENSG00000196367 E045 100.2011312 0.0013205679 1.106990e-13 3.125889e-12 7 98933241 98933387 147 + 2.116 1.855 -0.878
ENSG00000196367 E046 36.9278486 0.0036535088 2.099416e-06 1.625636e-05 7 98933388 98933402 15 + 1.694 1.420 -0.940
ENSG00000196367 E047 85.2267449 0.0003729612 3.371456e-11 6.436759e-10 7 98935579 98935675 97 + 2.034 1.805 -0.768
ENSG00000196367 E048 107.4741698 0.0050627634 1.442607e-07 1.421278e-06 7 98937156 98937277 122 + 2.133 1.913 -0.738
ENSG00000196367 E049 123.7703254 0.0057567158 6.450609e-10 9.916811e-09 7 98937650 98937820 171 + 2.211 1.945 -0.893
ENSG00000196367 E050 76.2672382 0.0171642491 1.704451e-03 6.296740e-03 7 98942949 98943017 69 + 1.975 1.779 -0.660
ENSG00000196367 E051 1.9582816 0.1281592420 3.067644e-01 4.489464e-01 7 98945747 98945800 54 + 0.575 0.372 -1.026
ENSG00000196367 E052 0.1482932 0.0428725485 4.685047e-01   7 98945930 98945950 21 + 0.000 0.129 20.537
ENSG00000196367 E053 87.0341981 0.0088201051 4.947985e-03 1.578641e-02 7 98948221 98948340 120 + 2.001 1.873 -0.428
ENSG00000196367 E054 85.7484672 0.0034819400 2.699375e-03 9.372333e-03 7 98948566 98948685 120 + 1.984 1.878 -0.358
ENSG00000196367 E055 85.1755495 0.0055253301 1.869930e-05 1.167802e-04 7 98949417 98949581 165 + 2.021 1.832 -0.635
ENSG00000196367 E056 109.8925078 0.0102855040 6.201213e-04 2.607135e-03 7 98949660 98949841 182 + 2.119 1.957 -0.543
ENSG00000196367 E057 107.5012783 0.0067923913 3.111595e-03 1.059439e-02 7 98950064 98950221 158 + 2.088 1.974 -0.384
ENSG00000196367 E058 66.1214481 0.0160828294 3.522392e-02 8.207348e-02 7 98950222 98950262 41 + 1.881 1.768 -0.383
ENSG00000196367 E059 86.5444780 0.0170633254 3.853192e-01 5.295127e-01 7 98950876 98951004 129 + 1.954 1.932 -0.073
ENSG00000196367 E060 140.0296936 0.0133907022 1.571671e-01 2.713266e-01 7 98953167 98953433 267 + 2.173 2.125 -0.162
ENSG00000196367 E061 121.0081342 0.0039972368 2.807406e-02 6.816115e-02 7 98955098 98955304 207 + 2.115 2.052 -0.209
ENSG00000196367 E062 127.6548429 0.0067248082 2.418672e-01 3.763874e-01 7 98956146 98956304 159 + 2.114 2.096 -0.062
ENSG00000196367 E063 132.3425389 0.0020169127 5.927421e-03 1.841718e-02 7 98956399 98956533 135 + 2.155 2.086 -0.231
ENSG00000196367 E064 118.0161623 0.0014720204 1.014396e-03 4.008473e-03 7 98957981 98958091 111 + 2.112 2.024 -0.295
ENSG00000196367 E065 143.1141898 0.0031606584 9.766613e-03 2.818847e-02 7 98959344 98959490 147 + 2.185 2.120 -0.219
ENSG00000196367 E066 178.2227173 0.0005601968 6.211353e-04 2.610529e-03 7 98961261 98961474 214 + 2.279 2.215 -0.215
ENSG00000196367 E067 144.8579668 0.0002294141 9.060121e-04 3.634927e-03 7 98962302 98962427 126 + 2.195 2.128 -0.222
ENSG00000196367 E068 171.2097445 0.0002174470 4.744015e-03 1.521652e-02 7 98964629 98964775 147 + 2.256 2.211 -0.151
ENSG00000196367 E069 1.6899045 0.0140414371 8.072051e-02 1.606768e-01 7 98965693 98965695 3 + 0.208 0.535 1.983
ENSG00000196367 E070 198.4121328 0.0011870346 5.377251e-01 6.692446e-01 7 98965696 98965895 200 + 2.286 2.302 0.054
ENSG00000196367 E071 162.0132478 0.0041039351 5.830135e-02 1.237121e-01 7 98967041 98967162 122 + 2.228 2.187 -0.137
ENSG00000196367 E072 214.3453780 0.0019823038 3.196521e-02 7.579306e-02 7 98967485 98967698 214 + 2.345 2.313 -0.108
ENSG00000196367 E073 116.6076193 0.0012204648 2.707819e-01 4.094341e-01 7 98970112 98970186 75 + 2.068 2.062 -0.020
ENSG00000196367 E074 149.3179435 0.0005137539 5.584619e-02 1.194227e-01 7 98970187 98970291 105 + 2.186 2.161 -0.084
ENSG00000196367 E075 174.1461329 0.0019296381 7.243191e-01 8.178670e-01 7 98971799 98971945 147 + 2.231 2.253 0.075
ENSG00000196367 E076 1.2941418 0.0113803967 4.327292e-02 9.706051e-02 7 98975960 98976148 189 + 0.116 0.488 2.757
ENSG00000196367 E077 137.1691177 0.0006738398 7.342452e-02 1.490033e-01 7 98976149 98976268 120 + 2.089 2.180 0.303
ENSG00000196367 E078 217.1486346 0.0006655289 1.488772e-01 2.601516e-01 7 98976483 98976770 288 + 2.296 2.368 0.242
ENSG00000196367 E079 160.1755749 0.0052213476 2.105409e-01 3.391811e-01 7 98976939 98977076 138 + 2.152 2.248 0.321
ENSG00000196367 E080 148.6638421 0.0042835424 1.580899e-01 2.725793e-01 7 98978211 98978323 113 + 2.118 2.217 0.329
ENSG00000196367 E081 146.6188824 0.0036366802 1.773102e-01 2.977356e-01 7 98978769 98978904 136 + 2.116 2.208 0.306
ENSG00000196367 E082 198.8108879 0.0004078734 7.801517e-05 4.186399e-04 7 98981769 98981960 192 + 2.220 2.359 0.463
ENSG00000196367 E083 241.4538429 0.0023627607 1.043186e-02 2.982127e-02 7 98983264 98983459 196 + 2.316 2.435 0.397
ENSG00000196367 E084 32.4557049 0.0007517655 7.529416e-02 1.519977e-01 7 98983460 98983492 33 + 1.437 1.579 0.487
ENSG00000196367 E085 266.8051912 0.0002509595 1.739881e-08 2.051888e-07 7 98984093 98984358 266 + 2.329 2.491 0.541
ENSG00000196367 E086 173.1311172 0.0013108272 1.232280e-06 1.003791e-05 7 98984944 98985044 101 + 2.125 2.316 0.639
ENSG00000196367 E087 250.7237212 0.0043263293 3.211316e-05 1.896313e-04 7 98988765 98988966 202 + 2.282 2.482 0.669
ENSG00000196367 E088 235.0565109 0.0018611758 4.881253e-05 2.757616e-04 7 98990455 98990619 165 + 2.279 2.439 0.536
ENSG00000196367 E089 201.2331606 0.0052093699 2.925466e-03 1.004587e-02 7 98992137 98992227 91 + 2.209 2.374 0.552
ENSG00000196367 E090 127.2991087 0.0012749492 6.192735e-05 3.409559e-04 7 98993538 98993591 54 + 2.004 2.181 0.590
ENSG00000196367 E091 228.3056100 0.0027603810 8.010427e-08 8.288554e-07 7 98993592 98993737 146 + 2.228 2.450 0.741
ENSG00000196367 E092 302.4282108 0.0008987956 2.610407e-11 5.078392e-10 7 98994587 98994848 262 + 2.363 2.563 0.669
ENSG00000196367 E093 315.9850304 0.0001795374 4.864680e-22 3.898473e-20 7 99004190 99004415 226 + 2.356 2.592 0.787
ENSG00000196367 E094 294.6672717 0.0003969565 1.452034e-26 1.807381e-24 7 99005131 99005348 218 + 2.299 2.578 0.930
ENSG00000196367 E095 260.7695973 0.0048431261 1.210667e-13 3.400908e-12 7 99008377 99008561 185 + 2.207 2.548 1.136
ENSG00000196367 E096 335.9094330 0.0091915005 1.462424e-08 1.748734e-07 7 99011052 99011255 204 + 2.324 2.654 1.102
ENSG00000196367 E097 435.8398285 0.0088173560 1.316589e-08 1.587373e-07 7 99011341 99011535 195 + 2.446 2.764 1.058
ENSG00000196367 E098 1411.5410545 0.0133944478 6.030746e-14 1.768313e-12 7 99012071 99014617 2547 + 2.870 3.308 1.458
ENSG00000196367 E099 18.6364221 0.0019589240 8.203222e-01 8.866450e-01 7 99014618 99014955 338 + 1.267 1.315 0.170
ENSG00000196367 E100 0.5181333 0.0206322935 5.927511e-01 7.152370e-01 7 99020254 99020329 76 + 0.208 0.129 -0.827
ENSG00000196367 E101 14.0456316 0.0037475743 4.174742e-01 5.608131e-01 7 99030595 99030757 163 + 1.123 1.227 0.371
ENSG00000196367 E102 3.1573618 0.0397835348 7.870788e-01 8.636657e-01 7 99030758 99030764 7 + 0.575 0.650 0.328
ENSG00000196367 E103 5.4404165 0.0029622090 9.622369e-01 9.801800e-01 7 99030885 99030890 6 + 0.793 0.815 0.084
ENSG00000196367 E104 12.3047192 0.0016772971 5.207997e-01 6.547391e-01 7 99030891 99031000 110 + 1.070 1.160 0.327
ENSG00000196367 E105 13.8621259 0.0024783557 6.055502e-01 7.259084e-01 7 99031345 99031465 121 + 1.123 1.200 0.276
ENSG00000196367 E106 14.2996699 0.0012148874 2.948348e-01 4.359322e-01 7 99032894 99033039 146 + 1.113 1.236 0.440
ENSG00000196367 E107 2.2142959 0.0067839339 6.539892e-01 7.643107e-01 7 99035417 99036477 1061 + 0.538 0.487 -0.245
ENSG00000196367 E108 3.0602247 0.0079514415 3.024605e-01 4.443326e-01 7 99039943 99040122 180 + 0.670 0.534 -0.606
ENSG00000196367 E109 7.9994521 0.0022446551 1.271257e-02 3.523619e-02 7 99045542 99045792 251 + 0.748 1.069 1.219
ENSG00000196367 E110 0.1817044 0.0390412636 4.686358e-01   7 99045793 99045800 8 + 0.000 0.129 20.541
ENSG00000196367 E111 26.0071139 0.0077377186 4.290430e-01 5.717807e-01 7 99047655 99048023 369 + 1.380 1.473 0.320
ENSG00000196367 E112 38.7170755 0.0006756224 4.011201e-01 5.448008e-01 7 99048024 99050831 2808 + 1.552 1.631 0.270
ENSG00000196367 E113 0.4751703 0.0207873296 5.428122e-01 6.735184e-01 7 99053595 99053619 25 + 0.116 0.228 1.169