ENSG00000188352

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000338382 ENSG00000188352 HEK293_OSMI2_2hA HEK293_TMG_2hB FOCAD protein_coding protein_coding 19.97096 21.48483 19.44973 2.681937 0.483144 -0.1434976 7.3842249 4.362649 7.640934 1.1050357 0.4887183 0.8071281 0.36710833 0.19656667 0.3946000 0.19803333 0.008096868 7.079223e-05 FALSE TRUE
ENST00000605086 ENSG00000188352 HEK293_OSMI2_2hA HEK293_TMG_2hB FOCAD protein_coding retained_intron 19.97096 21.48483 19.44973 2.681937 0.483144 -0.1434976 6.4356705 10.183931 4.014377 2.1817993 0.4515064 -1.3408732 0.32119583 0.46333333 0.2055333 -0.25780000 0.000474928 7.079223e-05 FALSE TRUE
MSTRG.32470.1 ENSG00000188352 HEK293_OSMI2_2hA HEK293_TMG_2hB FOCAD protein_coding   19.97096 21.48483 19.44973 2.681937 0.483144 -0.1434976 0.9601272 0.187756 2.042292 0.1322315 0.3584306 3.3754428 0.04763333 0.01083333 0.1056333 0.09480000 0.031073608 7.079223e-05 FALSE TRUE
MSTRG.32470.3 ENSG00000188352 HEK293_OSMI2_2hA HEK293_TMG_2hB FOCAD protein_coding   19.97096 21.48483 19.44973 2.681937 0.483144 -0.1434976 2.5560291 5.286412 1.747327 0.2295766 0.5000817 -1.5916332 0.12950833 0.25806667 0.0890000 -0.16906667 0.022408378 7.079223e-05   FALSE
MSTRG.32470.5 ENSG00000188352 HEK293_OSMI2_2hA HEK293_TMG_2hB FOCAD protein_coding   19.97096 21.48483 19.44973 2.681937 0.483144 -0.1434976 1.5371543 1.177064 2.221240 0.1108308 0.1994922 0.9104487 0.08016250 0.05723333 0.1138000 0.05656667 0.021037290 7.079223e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000188352 E001 1.8425698 0.0451680216 2.862122e-02 6.925087e-02 9 20658309 20658335 27 + 0.613 0.226 -2.187
ENSG00000188352 E002 2.9401594 0.0269755632 1.395654e-01 2.474289e-01 9 20658336 20658345 10 + 0.702 0.483 -0.984
ENSG00000188352 E003 4.3721001 0.0255784069 4.229244e-01 5.660658e-01 9 20658346 20658350 5 + 0.776 0.677 -0.403
ENSG00000188352 E004 31.6398970 0.0426329041 7.317311e-01 8.233263e-01 9 20658351 20658459 109 + 1.484 1.534 0.171
ENSG00000188352 E005 36.2526005 0.0470657444 3.662181e-01 5.105642e-01 9 20658460 20658690 231 + 1.505 1.620 0.393
ENSG00000188352 E006 51.5095071 0.0455512010 3.432025e-01 4.872674e-01 9 20658691 20658826 136 + 1.651 1.771 0.408
ENSG00000188352 E007 29.0499313 0.0665989181 9.549926e-05 5.009150e-04 9 20673620 20673873 254 + 1.096 1.662 1.969
ENSG00000188352 E008 10.9787197 0.0136051371 3.172153e-01 4.600647e-01 9 20684259 20684293 35 + 1.118 1.037 -0.295
ENSG00000188352 E009 0.9005597 0.2018618741 2.544426e-02 6.279527e-02 9 20694520 20694564 45 + 0.458 0.000 -14.960
ENSG00000188352 E010 42.4235246 0.0051711146 8.632064e-10 1.294277e-08 9 20715322 20715410 89 + 1.792 1.424 -1.252
ENSG00000188352 E011 46.4139899 0.0006400244 1.431453e-09 2.060673e-08 9 20717794 20717868 75 + 1.802 1.523 -0.948
ENSG00000188352 E012 71.2470781 0.0004310153 1.766854e-12 4.157561e-11 9 20720380 20720534 155 + 1.980 1.720 -0.877
ENSG00000188352 E013 0.0000000       9 20726286 20726348 63 +      
ENSG00000188352 E014 0.0000000       9 20726351 20726432 82 +      
ENSG00000188352 E015 50.5069578 0.0040069945 2.662257e-06 2.015975e-05 9 20740236 20740340 105 + 1.823 1.584 -0.810
ENSG00000188352 E016 55.8581443 0.0041011684 2.181624e-06 1.682532e-05 9 20758090 20758191 102 + 1.864 1.631 -0.787
ENSG00000188352 E017 33.2550441 0.0069681638 5.467788e-04 2.334955e-03 9 20764869 20764873 5 + 1.636 1.418 -0.748
ENSG00000188352 E018 93.4968128 0.0072154370 1.928803e-09 2.709721e-08 9 20764874 20765073 200 + 2.111 1.803 -1.033
ENSG00000188352 E019 97.8619343 0.0040797397 8.370633e-10 1.258465e-08 9 20770032 20770238 207 + 2.114 1.858 -0.857
ENSG00000188352 E020 65.4495010 0.0011422783 2.848998e-10 4.654887e-09 9 20778681 20778768 88 + 1.941 1.690 -0.848
ENSG00000188352 E021 97.6877251 0.0004369228 6.227335e-10 9.603174e-09 9 20781727 20781929 203 + 2.085 1.898 -0.628
ENSG00000188352 E022 0.0000000       9 20789334 20789350 17 +      
ENSG00000188352 E023 98.1515491 0.0003838105 1.130713e-11 2.333954e-10 9 20789351 20789608 258 + 2.096 1.888 -0.696
ENSG00000188352 E024 49.1675297 0.0005527013 8.810493e-04 3.547775e-03 9 20819796 20819900 105 + 1.765 1.636 -0.436
ENSG00000188352 E025 0.1451727 0.0447457334 5.123928e-01   9 20820294 20820323 30 + 0.117 0.000 -12.368
ENSG00000188352 E026 56.9441593 0.0004104086 1.463728e-06 1.173315e-05 9 20820324 20820388 65 + 1.854 1.669 -0.628
ENSG00000188352 E027 53.8165706 0.0004672267 1.053756e-07 1.066233e-06 9 20820389 20820425 37 + 1.843 1.626 -0.736
ENSG00000188352 E028 81.0849904 0.0003141176 9.616431e-12 2.010155e-10 9 20820941 20821061 121 + 2.025 1.797 -0.768
ENSG00000188352 E029 39.1953724 0.0005504845 2.360131e-04 1.116738e-03 9 20821062 20821071 10 + 1.692 1.528 -0.559
ENSG00000188352 E030 37.1571567 0.0005913111 6.909158e-04 2.866037e-03 9 20822989 20822992 4 + 1.663 1.510 -0.524
ENSG00000188352 E031 80.8125657 0.0010219093 8.196975e-07 6.934102e-06 9 20822993 20823115 123 + 1.996 1.831 -0.558
ENSG00000188352 E032 86.1275880 0.0003157344 2.825200e-08 3.196527e-07 9 20862578 20862712 135 + 2.028 1.856 -0.577
ENSG00000188352 E033 1.2565685 0.0099883158 2.701366e-02 6.602662e-02 9 20862713 20863147 435 + 0.502 0.127 -2.673
ENSG00000188352 E034 0.2966881 0.0271447535 2.118092e-01   9 20863421 20863550 130 + 0.210 0.000 -13.369
ENSG00000188352 E035 56.7766181 0.0004161341 9.113959e-04 3.653897e-03 9 20865926 20865976 51 + 1.823 1.708 -0.389
ENSG00000188352 E036 66.9898225 0.0004005369 6.118462e-04 2.576519e-03 9 20866929 20867012 84 + 1.891 1.783 -0.365
ENSG00000188352 E037 0.0000000       9 20872807 20872872 66 +      
ENSG00000188352 E038 0.1472490 0.0468501198 5.118659e-01   9 20873843 20874680 838 + 0.117 0.000 -12.369
ENSG00000188352 E039 81.5079331 0.0003652870 5.811376e-03 1.811693e-02 9 20874681 20874807 127 + 1.957 1.888 -0.230
ENSG00000188352 E040 6.8664739 0.0127518606 1.804116e-02 4.722148e-02 9 20874808 20875815 1008 + 1.014 0.736 -1.070
ENSG00000188352 E041 40.9590573 0.0007914252 7.858551e-03 2.342521e-02 9 20881871 20881905 35 + 1.681 1.573 -0.365
ENSG00000188352 E042 75.4273644 0.0138658509 9.135937e-02 1.772482e-01 9 20881906 20882056 151 + 1.924 1.849 -0.253
ENSG00000188352 E043 45.7154310 0.0277565024 9.600574e-02 1.843746e-01 9 20885109 20885146 38 + 1.726 1.617 -0.369
ENSG00000188352 E044 82.1646576 0.0148044097 7.190535e-02 1.465026e-01 9 20885147 20885230 84 + 1.965 1.879 -0.289
ENSG00000188352 E045 0.4502799 0.0341185934 9.106788e-02 1.768095e-01 9 20885231 20885529 299 + 0.286 0.000 -13.954
ENSG00000188352 E046 0.0000000       9 20896971 20897048 78 +      
ENSG00000188352 E047 91.1219480 0.0098794475 2.968641e-01 4.381394e-01 9 20907150 20907242 93 + 1.981 1.956 -0.084
ENSG00000188352 E048 95.9006572 0.0021159522 2.744793e-01 4.136316e-01 9 20912866 20912954 89 + 1.996 1.988 -0.027
ENSG00000188352 E049 65.0163345 0.0063787794 5.898351e-01 7.128344e-01 9 20916893 20916937 45 + 1.821 1.828 0.023
ENSG00000188352 E050 96.9508131 0.0004889809 9.970716e-01 1.000000e+00 9 20923660 20923768 109 + 1.978 2.017 0.131
ENSG00000188352 E051 91.7103658 0.0014651667 6.812896e-01 7.850224e-01 9 20926301 20926417 117 + 1.964 1.988 0.080
ENSG00000188352 E052 0.0000000       9 20927765 20927801 37 +      
ENSG00000188352 E053 0.1515154 0.0453740305 5.120173e-01   9 20927802 20927891 90 + 0.118 0.000 -12.369
ENSG00000188352 E054 0.1482932 0.0404750875 4.762834e-01   9 20928944 20929082 139 + 0.000 0.127 12.357
ENSG00000188352 E055 167.2826048 0.0004602295 4.796765e-01 6.180209e-01 9 20929358 20929596 239 + 2.223 2.242 0.064
ENSG00000188352 E056 114.7887391 0.0005649414 5.778153e-01 7.029989e-01 9 20933014 20933103 90 + 2.060 2.079 0.067
ENSG00000188352 E057 146.6167284 0.0011252892 6.352454e-01 7.495910e-01 9 20944627 20944774 148 + 2.163 2.184 0.071
ENSG00000188352 E058 116.2838499 0.0003183732 5.498731e-03 1.728362e-02 9 20946701 20946820 120 + 2.003 2.134 0.438
ENSG00000188352 E059 114.5938709 0.0023653688 4.248835e-02 9.560636e-02 9 20948271 20948393 123 + 2.004 2.125 0.403
ENSG00000188352 E060 0.1817044 0.0401660536 4.738135e-01   9 20948394 20948394 1 + 0.000 0.127 12.362
ENSG00000188352 E061 115.8504327 0.0022148876 4.489678e-01 5.901721e-01 9 20948851 20948928 78 + 2.038 2.103 0.218
ENSG00000188352 E062 109.4219497 0.0022193209 6.220978e-01 7.389325e-01 9 20949604 20949675 72 + 2.019 2.074 0.185
ENSG00000188352 E063 128.1446889 0.0002363754 1.938695e-03 7.036419e-03 9 20950996 20951098 103 + 2.044 2.180 0.456
ENSG00000188352 E064 0.0000000       9 20952420 20952515 96 +      
ENSG00000188352 E065 116.5713109 0.0015577502 2.396679e-04 1.131940e-03 9 20952985 20953065 81 + 1.978 2.154 0.590
ENSG00000188352 E066 0.1482932 0.0404750875 4.762834e-01   9 20957502 20957617 116 + 0.000 0.127 12.357
ENSG00000188352 E067 0.5901540 0.0200452391 3.184542e-01 4.614270e-01 9 20976322 20976419 98 + 0.286 0.127 -1.453
ENSG00000188352 E068 138.4231781 0.0017633606 9.336568e-05 4.907961e-04 9 20976420 20976548 129 + 2.050 2.227 0.590
ENSG00000188352 E069 133.9147947 0.0045608816 5.360518e-04 2.294733e-03 9 20978339 20978454 116 + 2.028 2.212 0.615
ENSG00000188352 E070 199.9422247 0.0010777525 1.961021e-06 1.528343e-05 9 20981426 20981686 261 + 2.210 2.385 0.585
ENSG00000188352 E071 129.8580028 0.0009257653 3.421635e-08 3.811093e-07 9 20982357 20982446 90 + 1.992 2.218 0.756
ENSG00000188352 E072 200.6118703 0.0029604088 3.218233e-06 2.391858e-05 9 20986288 20986465 178 + 2.193 2.395 0.672
ENSG00000188352 E073 156.2522148 0.0085291752 1.104103e-03 4.316855e-03 9 20988332 20988429 98 + 2.079 2.289 0.701
ENSG00000188352 E074 226.9137509 0.0158515148 1.097196e-04 5.666555e-04 9 20990123 20990374 252 + 2.180 2.478 0.994
ENSG00000188352 E075 145.5490608 0.0199930905 2.843019e-05 1.700292e-04 9 20993253 20993328 76 + 1.939 2.308 1.234
ENSG00000188352 E076 248.0629624 0.0070085936 7.822648e-12 1.657507e-10 9 20995556 20995955 400 + 2.178 2.536 1.193