ENSG00000188199

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000372321 ENSG00000188199 HEK293_OSMI2_2hA HEK293_TMG_2hB NUTM2B protein_coding protein_coding 0.8113469 1.303562 0.777915 0.1489928 0.1349356 -0.7373723 0.1254054 0.05283345 0.2384131 0.02195644 0.05375815 1.983136 0.1846042 0.0378 0.3002333 0.2624333 0.0003417587 0.000308752 FALSE TRUE
ENST00000429828 ENSG00000188199 HEK293_OSMI2_2hA HEK293_TMG_2hB NUTM2B protein_coding protein_coding 0.8113469 1.303562 0.777915 0.1489928 0.1349356 -0.7373723 0.6859415 1.25072849 0.5395019 0.12924936 0.08511499 -1.198061 0.8153958 0.9622 0.6997667 -0.2624333 0.0003087520 0.000308752 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000188199 E001 0.0000000       10 79703227 79703278 52 +      
ENSG00000188199 E002 0.9535628 0.023055430 4.927622e-01 6.298949e-01 10 79703279 79703991 713 + 0.367 0.235 -0.887
ENSG00000188199 E003 2.2705197 0.168146385 7.414686e-01 8.306319e-01 10 79706042 79706741 700 + 0.442 0.504 0.310
ENSG00000188199 E004 0.1515154 0.043687023 2.828443e-01   10 79708699 79708827 129 + 0.159 0.000 -10.145
ENSG00000188199 E005 0.3332198 0.030326630 6.798343e-01   10 79709800 79709939 140 + 0.159 0.093 -0.886
ENSG00000188199 E006 3.1354745 0.005746056 1.930370e-01 3.175772e-01 10 79710382 79710764 383 + 0.442 0.639 0.921
ENSG00000188199 E007 6.4097815 0.003430111 7.969768e-01 8.704605e-01 10 79711250 79711366 117 + 0.829 0.844 0.057
ENSG00000188199 E008 22.9805433 0.003220097 7.292408e-02 1.482021e-01 10 79711700 79712755 1056 + 1.302 1.374 0.254
ENSG00000188199 E009 2.6021096 0.007687506 4.895238e-06 3.492419e-05 10 79712894 79714681 1788 + 0.883 0.170 -3.794