ENSG00000187498

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000375820 ENSG00000187498 HEK293_OSMI2_2hA HEK293_TMG_2hB COL4A1 protein_coding protein_coding 9.974474 10.73391 9.918949 0.2929757 0.4257546 -0.1138065 8.4882523 6.9167146 9.750691 0.6633904 0.2923436 0.494812 0.85562500 0.64366667 0.9842 0.34053333 4.644615e-03 6.749903e-25 FALSE TRUE
ENST00000649720 ENSG00000187498 HEK293_OSMI2_2hA HEK293_TMG_2hB COL4A1 protein_coding retained_intron 9.974474 10.73391 9.918949 0.2929757 0.4257546 -0.1138065 0.1563092 0.6688963 0.000000 0.6688963 0.0000000 -6.085119 0.01449167 0.06443333 0.0000 -0.06443333 8.052671e-01 6.749903e-25 FALSE TRUE
ENST00000650424 ENSG00000187498 HEK293_OSMI2_2hA HEK293_TMG_2hB COL4A1 protein_coding protein_coding 9.974474 10.73391 9.918949 0.2929757 0.4257546 -0.1138065 1.1561939 3.0284027 0.000000 0.4459185 0.0000000 -8.247169 0.11196250 0.28033333 0.0000 -0.28033333 6.749903e-25 6.749903e-25 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000187498 E001 3.3889960 0.0498102211 3.011911e-05 1.791684e-04 13 110148963 110149064 102 - 0.111 0.893 4.546
ENSG00000187498 E002 5.1174213 0.0291415190 7.190623e-07 6.159810e-06 13 110149065 110149110 46 - 0.200 1.044 4.111
ENSG00000187498 E003 423.3065825 0.0115484922 1.365590e-08 1.641437e-07 13 110149111 110150444 1334 - 2.437 2.763 1.085
ENSG00000187498 E004 39.6347622 0.0007400537 3.826872e-01 5.268727e-01 13 110152334 110152339 6 - 1.563 1.642 0.268
ENSG00000187498 E005 97.1761293 0.0045017530 1.682544e-02 4.454459e-02 13 110152340 110152506 167 - 1.910 2.056 0.491
ENSG00000187498 E006 79.6040731 0.0021523896 3.067089e-03 1.046448e-02 13 110155283 110155397 115 - 1.810 1.975 0.554
ENSG00000187498 E007 0.1482932 0.0424989095 4.260944e-01   13 110161018 110161191 174 - 0.000 0.134 11.531
ENSG00000187498 E008 88.4260617 0.0003515892 1.259594e-02 3.495998e-02 13 110161192 110161369 178 - 1.879 2.004 0.419
ENSG00000187498 E009 0.2214452 0.0387762526 4.245472e-01   13 110161958 110162229 272 - 0.000 0.135 11.538
ENSG00000187498 E010 102.7816750 0.0003024545 5.592818e-03 1.753513e-02 13 110162230 110162442 213 - 1.947 2.074 0.426
ENSG00000187498 E011 74.3207905 0.0003401117 8.241724e-02 1.633164e-01 13 110163463 110163561 99 - 1.820 1.921 0.341
ENSG00000187498 E012 73.0083547 0.0003867381 6.139642e-01 7.325462e-01 13 110164862 110164990 129 - 1.837 1.888 0.172
ENSG00000187498 E013 0.2998086 0.0310781031 9.160848e-01   13 110164991 110165179 189 - 0.111 0.134 0.312
ENSG00000187498 E014 57.2376741 0.0004472994 3.779637e-01 5.222751e-01 13 110166232 110166303 72 - 1.721 1.793 0.241
ENSG00000187498 E015 53.7018351 0.0117498419 7.939876e-01 8.683521e-01 13 110167158 110167230 73 - 1.722 1.742 0.071
ENSG00000187498 E016 65.1564107 0.0026860804 6.276453e-01 7.434150e-01 13 110169629 110169762 134 - 1.786 1.842 0.190
ENSG00000187498 E017 93.8365643 0.0003321913 8.918908e-01 9.349604e-01 13 110170547 110170732 186 - 1.954 1.989 0.118
ENSG00000187498 E018 63.0903428 0.0003992284 5.342531e-01 6.663285e-01 13 110172720 110172770 51 - 1.802 1.805 0.009
ENSG00000187498 E019 75.7371544 0.0003358023 7.258764e-01 8.190454e-01 13 110173900 110173998 99 - 1.874 1.890 0.054
ENSG00000187498 E020 70.2071491 0.0003929456 9.329953e-01 9.617843e-01 13 110174446 110174526 81 - 1.833 1.867 0.114
ENSG00000187498 E021 90.7732177 0.0003149320 2.807859e-01 4.206592e-01 13 110174623 110174749 127 - 1.964 1.954 -0.033
ENSG00000187498 E022 80.2692274 0.0003740756 4.845482e-01 6.225075e-01 13 110175218 110175357 140 - 1.903 1.906 0.008
ENSG00000187498 E023 73.0166394 0.0003877251 4.845365e-01 6.225075e-01 13 110176424 110176513 90 - 1.837 1.896 0.199
ENSG00000187498 E024 87.5151502 0.0060448387 4.358799e-01 5.780214e-01 13 110176626 110176724 99 - 1.950 1.941 -0.030
ENSG00000187498 E025 90.6586449 0.0127865381 2.041055e-01 3.313127e-01 13 110176885 110177037 153 - 1.988 1.937 -0.172
ENSG00000187498 E026 63.4991612 0.0004356808 9.221210e-02 1.785826e-01 13 110177842 110177931 90 - 1.829 1.785 -0.151
ENSG00000187498 E027 71.9591217 0.0098119353 6.507877e-01 7.617910e-01 13 110178064 110178231 168 - 1.829 1.888 0.198
ENSG00000187498 E028 0.1817044 0.0396547245 4.254910e-01   13 110178867 110178922 56 - 0.000 0.135 11.535
ENSG00000187498 E029 53.0406227 0.0013964160 2.506602e-01 3.867289e-01 13 110178923 110179036 114 - 1.681 1.770 0.300
ENSG00000187498 E030 70.8670553 0.0026881561 8.719291e-01 9.216385e-01 13 110179271 110179421 151 - 1.833 1.873 0.133
ENSG00000187498 E031 64.2948340 0.0004159403 4.865508e-01 6.242590e-01 13 110181292 110181389 98 - 1.778 1.838 0.205
ENSG00000187498 E032 61.1840848 0.0048665562 1.196072e-01 2.194046e-01 13 110182993 110183097 105 - 1.724 1.842 0.401
ENSG00000187498 E033 55.6539980 0.0159843698 6.109099e-01 7.301619e-01 13 110183184 110183276 93 - 1.713 1.782 0.234
ENSG00000187498 E034 67.9040243 0.0006652906 9.026359e-01 9.420022e-01 13 110186385 110186553 169 - 1.812 1.848 0.120
ENSG00000187498 E035 82.3302184 0.0003671973 5.520052e-01 6.813816e-01 13 110187138 110187329 192 - 1.914 1.921 0.023
ENSG00000187498 E036 0.4741261 0.0208601145 6.569104e-01 7.663584e-01 13 110190741 110191649 909 - 0.200 0.135 -0.684
ENSG00000187498 E037 55.0416392 0.0050161408 5.367135e-01 6.684423e-01 13 110192214 110192284 71 - 1.714 1.778 0.218
ENSG00000187498 E038 57.5404614 0.0070420081 3.897284e-01 5.337869e-01 13 110192830 110192913 84 - 1.723 1.804 0.274
ENSG00000187498 E039 53.3038362 0.0006995554 1.874072e-01 3.104667e-01 13 110195023 110195118 96 - 1.749 1.715 -0.117
ENSG00000187498 E040 0.4720498 0.1716894334 7.008291e-01 8.001999e-01 13 110197537 110198466 930 - 0.199 0.135 -0.679
ENSG00000187498 E041 67.9036145 0.0003837463 3.870353e-02 8.863639e-02 13 110198467 110198631 165 - 1.864 1.805 -0.198
ENSG00000187498 E042 43.7523388 0.0005359764 7.536899e-01 8.395372e-01 13 110200854 110200889 36 - 1.639 1.653 0.045
ENSG00000187498 E043 56.4924621 0.0004672919 8.013489e-02 1.597545e-01 13 110201438 110201522 85 - 1.782 1.730 -0.177
ENSG00000187498 E044 48.8610580 0.0007782581 6.550005e-06 4.540853e-05 13 110203566 110203607 42 - 1.784 1.580 -0.691
ENSG00000187498 E045 0.1451727 0.0428407353 5.576021e-01   13 110204649 110205352 704 - 0.111 0.000 -11.179
ENSG00000187498 E046 50.9980965 0.0060158743 2.312394e-03 8.189410e-03 13 110205353 110205406 54 - 1.784 1.629 -0.526
ENSG00000187498 E047 34.4829215 0.0165281167 7.682898e-02 1.544234e-01 13 110205494 110205496 3 - 1.600 1.487 -0.387
ENSG00000187498 E048 55.6879695 0.0024700718 7.124059e-03 2.154688e-02 13 110205497 110205538 42 - 1.800 1.691 -0.371
ENSG00000187498 E049 57.3248984 0.0004462993 1.189218e-03 4.604785e-03 13 110206665 110206715 51 - 1.818 1.696 -0.413
ENSG00000187498 E050 45.2146302 0.0013748693 3.618963e-02 8.394781e-02 13 110206865 110206891 27 - 1.697 1.613 -0.285
ENSG00000187498 E051 61.5468405 0.0003963934 1.720672e-03 6.347504e-03 13 110207403 110207489 87 - 1.844 1.732 -0.377
ENSG00000187498 E052 43.0555022 0.0005358879 1.387250e-03 5.265225e-03 13 110208849 110208890 42 - 1.709 1.567 -0.482
ENSG00000187498 E053 39.8750995 0.0005477135 5.130300e-04 2.208407e-03 13 110209392 110209427 36 - 1.686 1.522 -0.558
ENSG00000187498 E054 0.0000000       13 110209791 110209888 98 -      
ENSG00000187498 E055 0.9598924 0.0199943708 8.583164e-01 9.125729e-01 13 110209889 110209979 91 - 0.273 0.320 0.314
ENSG00000187498 E056 46.2201513 0.0005250576 2.182190e-03 7.786806e-03 13 110209980 110210042 63 - 1.733 1.604 -0.438
ENSG00000187498 E057 0.2934659 0.0300198552 9.138319e-01   13 110210043 110210128 86 - 0.111 0.134 0.313
ENSG00000187498 E058 56.4195384 0.0007877079 3.759699e-02 8.657426e-02 13 110210129 110210212 84 - 1.790 1.721 -0.235
ENSG00000187498 E059 33.7797239 0.0020956149 3.929013e-03 1.294324e-02 13 110211647 110211648 2 - 1.609 1.456 -0.524
ENSG00000187498 E060 40.0822033 0.0005668432 6.398223e-03 1.965755e-02 13 110211649 110211673 25 - 1.668 1.546 -0.415
ENSG00000187498 E061 3.5451624 0.0044392011 7.125452e-02 1.454159e-01 13 110211674 110211868 195 - 0.753 0.502 -1.099
ENSG00000187498 E062 54.4769512 0.0004340812 2.589154e-04 1.212297e-03 13 110211869 110211922 54 - 1.808 1.663 -0.492
ENSG00000187498 E063 0.1817044 0.0396547245 4.254910e-01   13 110211923 110212416 494 - 0.000 0.135 11.535
ENSG00000187498 E064 52.3222172 0.0018751880 4.254880e-04 1.872110e-03 13 110212417 110212479 63 - 1.796 1.642 -0.523
ENSG00000187498 E065 49.0477449 0.0100352890 1.150773e-02 3.236722e-02 13 110212574 110212618 45 - 1.765 1.623 -0.479
ENSG00000187498 E066 46.8290317 0.0016317644 1.005581e-03 3.977789e-03 13 110213782 110213826 45 - 1.745 1.597 -0.503
ENSG00000187498 E067 47.5015382 0.0004621044 7.099209e-05 3.849789e-04 13 110213926 110214015 90 - 1.763 1.588 -0.592
ENSG00000187498 E068 0.0000000       13 110235701 110235706 6 -      
ENSG00000187498 E069 0.0000000       13 110235707 110237264 1558 -      
ENSG00000187498 E070 0.0000000       13 110237265 110237279 15 -      
ENSG00000187498 E071 0.0000000       13 110237308 110237500 193 -      
ENSG00000187498 E072 0.0000000       13 110240818 110242674 1857 -      
ENSG00000187498 E073 30.9409494 0.0006476846 1.079857e-03 4.234646e-03 13 110242675 110242734 60 - 1.580 1.404 -0.607
ENSG00000187498 E074 0.0000000       13 110298605 110298899 295 -      
ENSG00000187498 E075 29.4542692 0.0006442348 1.386596e-05 8.913387e-05 13 110306944 110307157 214 - 1.590 1.336 -0.874