ENSG00000187240

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000375735 ENSG00000187240 HEK293_OSMI2_2hA HEK293_TMG_2hB DYNC2H1 protein_coding protein_coding 6.444873 3.460732 9.005314 0.4839079 0.1993991 1.377138 3.9790159 0.4767218 7.0948694 0.0889616 0.08357867 3.8676389 0.4822625 0.1501333 0.78836667 0.6382333 1.096747e-11 1.096747e-11 FALSE TRUE
ENST00000528670 ENSG00000187240 HEK293_OSMI2_2hA HEK293_TMG_2hB DYNC2H1 protein_coding nonsense_mediated_decay 6.444873 3.460732 9.005314 0.4839079 0.1993991 1.377138 1.8685104 1.9391841 1.5594172 0.1188966 0.06027318 -0.3126415 0.3927000 0.5909333 0.17323333 -0.4177000 1.740501e-03 1.096747e-11 TRUE TRUE
ENST00000533197 ENSG00000187240 HEK293_OSMI2_2hA HEK293_TMG_2hB DYNC2H1 protein_coding protein_coding 6.444873 3.460732 9.005314 0.4839079 0.1993991 1.377138 0.3435866 0.9452040 0.1228664 0.6513950 0.12286644 -2.8458322 0.0747000 0.2324000 0.01326667 -0.2191333 3.262106e-01 1.096747e-11 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000187240 E001 0.2924217 0.0290785164 1.000000e+00   11 103109410 103109425 16 + 0.093 0.000 -8.991
ENSG00000187240 E002 1.3232786 0.0360118581 2.626520e-01 4.004395e-01 11 103109426 103109513 88 + 0.316 0.000 -11.095
ENSG00000187240 E003 1.3232786 0.0360118581 2.626520e-01 4.004395e-01 11 103109514 103109521 8 + 0.316 0.000 -11.095
ENSG00000187240 E004 21.8099738 0.0008379551 9.383147e-05 4.929450e-04 11 103109522 103109769 248 + 1.252 0.737 -1.920
ENSG00000187240 E005 23.3646289 0.0009040742 5.047969e-04 2.178091e-03 11 103113537 103113707 171 + 1.275 0.860 -1.514
ENSG00000187240 E006 21.5296553 0.0009035943 1.122200e-02 3.169927e-02 11 103114103 103114238 136 + 1.234 0.955 -1.010
ENSG00000187240 E007 17.9358515 0.0010315089 1.512004e-03 5.674980e-03 11 103115177 103115295 119 + 1.166 0.737 -1.615
ENSG00000187240 E008 23.8736126 0.0177263992 5.441402e-03 1.712956e-02 11 103116570 103116714 145 + 1.277 0.912 -1.325
ENSG00000187240 E009 31.5244366 0.0100780116 5.435950e-04 2.323144e-03 11 103117631 103117863 233 + 1.393 0.998 -1.408
ENSG00000187240 E010 18.9924501 0.1091566464 2.031280e-01 3.301446e-01 11 103120447 103120581 135 + 1.175 0.959 -0.786
ENSG00000187240 E011 18.5363054 0.0384567452 2.288851e-01 3.611239e-01 11 103120689 103120802 114 + 1.158 1.000 -0.574
ENSG00000187240 E012 17.2984054 0.0019575938 1.233167e-04 6.290245e-04 11 103120925 103121036 112 + 1.159 0.565 -2.326
ENSG00000187240 E013 20.4509838 0.0055763931 1.787351e-05 1.121034e-04 11 103121372 103121496 125 + 1.228 0.565 -2.573
ENSG00000187240 E014 25.2956949 0.0059967438 2.109059e-05 1.301016e-04 11 103122825 103123000 176 + 1.312 0.737 -2.127
ENSG00000187240 E015 20.3158009 0.0009197594 1.100642e-05 7.242310e-05 11 103125100 103125295 196 + 1.225 0.565 -2.562
ENSG00000187240 E016 15.4134787 0.0011822836 6.711820e-05 3.662106e-04 11 103128910 103129005 96 + 1.118 0.445 -2.764
ENSG00000187240 E017 19.2275327 0.0010199836 2.790806e-06 2.103899e-05 11 103133555 103133707 153 + 1.210 0.445 -3.092
ENSG00000187240 E018 17.7870803 0.0010955568 7.123530e-05 3.861431e-04 11 103134321 103134419 99 + 1.173 0.565 -2.377
ENSG00000187240 E019 16.9719321 0.0010303276 7.038184e-04 2.912672e-03 11 103135495 103135634 140 + 1.148 0.660 -1.873
ENSG00000187240 E020 0.0000000       11 103135702 103135719 18 +      
ENSG00000187240 E021 15.9810290 0.0025016643 4.663099e-05 2.646842e-04 11 103135720 103135866 147 + 1.133 0.445 -2.820
ENSG00000187240 E022 15.9539947 0.0020590889 9.587024e-02 1.841978e-01 11 103135867 103135948 82 + 1.102 0.910 -0.706
ENSG00000187240 E023 19.7763712 0.0009257962 4.960802e-03 1.582170e-02 11 103143268 103143395 128 + 1.200 0.860 -1.250
ENSG00000187240 E024 16.6098317 0.0284920863 2.902445e-02 7.005561e-02 11 103147772 103147887 116 + 1.130 0.803 -1.222
ENSG00000187240 E025 21.3961170 0.0024200422 5.413549e-06 3.823084e-05 11 103148490 103148617 128 + 1.249 0.565 -2.647
ENSG00000187240 E026 26.3116777 0.0007707480 6.308542e-07 5.470724e-06 11 103152136 103152285 150 + 1.333 0.660 -2.527
ENSG00000187240 E027 28.9242269 0.0006739157 1.632289e-04 8.058380e-04 11 103153303 103153508 206 + 1.361 0.955 -1.453
ENSG00000187240 E028 26.7361411 0.0007146851 6.342424e-04 2.659480e-03 11 103154451 103154606 156 + 1.326 0.955 -1.331
ENSG00000187240 E029 1.7800150 0.0080026174 1.466969e-01 2.571957e-01 11 103154607 103154694 88 + 0.385 0.000 -11.511
ENSG00000187240 E030 25.9902038 0.0008461558 1.092766e-03 4.279422e-03 11 103154695 103154809 115 + 1.311 0.955 -1.279
ENSG00000187240 E031 25.5590779 0.0007462814 8.756465e-03 2.567577e-02 11 103155331 103155501 171 + 1.299 1.034 -0.945
ENSG00000187240 E032 1.5509768 0.0416689789 6.658268e-03 2.033580e-02 11 103155502 103156102 601 + 0.202 0.735 2.899
ENSG00000187240 E033 38.3532732 0.0025376583 1.220981e-10 2.124851e-09 11 103156388 103156770 383 + 1.492 0.660 -3.074
ENSG00000187240 E034 17.8997457 0.0104234392 1.691121e-04 8.313944e-04 11 103158677 103158809 133 + 1.173 0.566 -2.374
ENSG00000187240 E035 16.1973741 0.0051493438 1.921639e-02 4.980692e-02 11 103158910 103159027 118 + 1.114 0.803 -1.162
ENSG00000187240 E036 15.9701949 0.0010758383 4.636755e-05 2.633467e-04 11 103160932 103161044 113 + 1.129 0.445 -2.806
ENSG00000187240 E037 22.7588944 0.0008391487 1.092633e-05 7.195105e-05 11 103163028 103163147 120 + 1.269 0.660 -2.301
ENSG00000187240 E038 29.8522204 0.0007531276 3.032484e-05 1.802564e-04 11 103165898 103166048 151 + 1.375 0.910 -1.669
ENSG00000187240 E039 39.4282572 0.0005358608 8.865088e-06 5.965490e-05 11 103168755 103168960 206 + 1.489 1.068 -1.478
ENSG00000187240 E040 39.3688588 0.0005107963 1.076464e-03 4.222911e-03 11 103170108 103170290 183 + 1.480 1.208 -0.947
ENSG00000187240 E041 31.8566232 0.0055846924 5.456129e-04 2.330501e-03 11 103170886 103171068 183 + 1.400 1.034 -1.297
ENSG00000187240 E042 32.2254869 0.0006810616 2.069891e-05 1.279562e-04 11 103173082 103173305 224 + 1.408 0.955 -1.615
ENSG00000187240 E043 28.7535957 0.0048209513 6.258462e-03 1.929013e-02 11 103174055 103174170 116 + 1.348 1.069 -0.989
ENSG00000187240 E044 33.2144479 0.0006207973 3.316711e-04 1.507300e-03 11 103176235 103176434 200 + 1.414 1.068 -1.221
ENSG00000187240 E045 41.0653878 0.0088803636 6.772575e-03 2.063203e-02 11 103177556 103177820 265 + 1.494 1.254 -0.832
ENSG00000187240 E046 34.6149035 0.0005885822 2.506277e-03 8.782143e-03 11 103179026 103179233 208 + 1.424 1.158 -0.933
ENSG00000187240 E047 24.4291935 0.0008184174 2.577959e-03 8.998204e-03 11 103181757 103181886 130 + 1.285 0.955 -1.188
ENSG00000187240 E048 33.4584771 0.0009310832 3.309641e-02 7.800273e-02 11 103184896 103185051 156 + 1.402 1.232 -0.594
ENSG00000187240 E049 42.7509050 0.0168242286 2.736661e-03 9.483130e-03 11 103186242 103186501 260 + 1.517 1.208 -1.071
ENSG00000187240 E050 37.9847693 0.0060010461 7.349778e-05 3.969647e-04 11 103187340 103187586 247 + 1.473 1.069 -1.424
ENSG00000187240 E051 28.2820976 0.0038580640 3.774727e-04 1.687418e-03 11 103188497 103188648 152 + 1.352 0.955 -1.421
ENSG00000187240 E052 31.2189371 0.0006734035 1.064962e-03 4.183770e-03 11 103189672 103189816 145 + 1.385 1.068 -1.121
ENSG00000187240 E053 23.6903179 0.0007731824 2.279472e-02 5.731566e-02 11 103191517 103191619 103 + 1.263 1.034 -0.822
ENSG00000187240 E054 16.4555930 0.0022080212 3.616567e-02 8.390661e-02 11 103192097 103192117 21 + 1.118 0.860 -0.956
ENSG00000187240 E055 34.5245069 0.0014966826 6.465392e-03 1.983240e-02 11 103192118 103192264 147 + 1.420 1.184 -0.825
ENSG00000187240 E056 34.1498513 0.0006060135 2.006768e-04 9.667053e-04 11 103197933 103198063 131 + 1.426 1.068 -1.262
ENSG00000187240 E057 42.4791360 0.0077985836 1.879100e-03 6.849912e-03 11 103199228 103199476 249 + 1.513 1.232 -0.976
ENSG00000187240 E058 28.7299901 0.0007122946 5.404527e-05 3.019735e-04 11 103200046 103200154 109 + 1.361 0.910 -1.623
ENSG00000187240 E059 25.4778622 0.0020178588 1.603810e-03 5.973518e-03 11 103203663 103203776 114 + 1.304 0.956 -1.253
ENSG00000187240 E060 23.0960494 0.0008824724 5.949805e-02 1.257654e-01 11 103204822 103204910 89 + 1.249 1.068 -0.646
ENSG00000187240 E061 21.0893898 0.0013966385 2.324919e-01 3.654056e-01 11 103204911 103204964 54 + 1.203 1.100 -0.368
ENSG00000187240 E062 19.0618657 0.0009744773 2.947441e-01 4.358533e-01 11 103209876 103209960 85 + 1.159 1.068 -0.327
ENSG00000187240 E063 26.5419983 0.0007294415 9.095190e-02 1.766458e-01 11 103211789 103211943 155 + 1.301 1.158 -0.507
ENSG00000187240 E064 36.7120216 0.0016675349 9.836835e-04 3.903755e-03 11 103215721 103215858 138 + 1.452 1.158 -1.030
ENSG00000187240 E065 0.2987644 0.0272863620 1.000000e+00   11 103215859 103215891 33 + 0.093 0.000 -8.927
ENSG00000187240 E066 34.2385066 0.0018618210 4.658382e-02 1.030905e-01 11 103219915 103220028 114 + 1.410 1.254 -0.544
ENSG00000187240 E067 37.3584307 0.0006071760 4.309240e-01 5.735290e-01 11 103220623 103220783 161 + 1.432 1.399 -0.112
ENSG00000187240 E068 31.9801176 0.0006100972 5.822455e-01 7.066327e-01 11 103222030 103222153 124 + 1.366 1.350 -0.054
ENSG00000187240 E069 28.0329476 0.0007058987 3.244999e-01 4.678646e-01 11 103222965 103223086 122 + 1.316 1.254 -0.219
ENSG00000187240 E070 29.7013903 0.0006374652 8.148787e-02 1.618862e-01 11 103231260 103231346 87 + 1.348 1.208 -0.488
ENSG00000187240 E071 30.8740825 0.0007086029 1.475125e-01 2.583066e-01 11 103234034 103234160 127 + 1.359 1.254 -0.367
ENSG00000187240 E072 28.5014769 0.0553485627 6.513072e-01 7.621920e-01 11 103235672 103235813 142 + 1.293 1.413 0.420
ENSG00000187240 E073 32.4773343 0.0006184922 5.496081e-01 6.793163e-01 11 103236430 103236539 110 + 1.370 1.350 -0.069
ENSG00000187240 E074 0.0000000       11 103241527 103241547 21 +      
ENSG00000187240 E075 37.8504250 0.0037786025 2.303351e-01 3.628647e-01 11 103243693 103243791 99 + 1.443 1.368 -0.260
ENSG00000187240 E076 47.1502208 0.0005129694 3.752621e-01 5.196728e-01 11 103245251 103245374 124 + 1.529 1.496 -0.113
ENSG00000187240 E077 51.2293109 0.0004608212 6.728908e-01 7.787297e-01 11 103253285 103253448 164 + 1.551 1.614 0.215
ENSG00000187240 E078 43.8830350 0.0005172250 3.157887e-01 4.585643e-01 11 103255415 103255534 120 + 1.479 1.585 0.364
ENSG00000187240 E079 43.7367058 0.0005722509 5.092654e-01 6.445897e-01 11 103256106 103256240 135 + 1.482 1.564 0.282
ENSG00000187240 E080 43.7925815 0.0032854125 7.496782e-01 8.365590e-01 11 103257608 103257751 144 + 1.484 1.543 0.205
ENSG00000187240 E081 30.4715566 0.0006979450 5.268756e-01 6.600648e-01 11 103259888 103259977 90 + 1.326 1.415 0.307
ENSG00000187240 E082 29.8479162 0.0007472973 2.612846e-01 3.989188e-01 11 103280348 103280413 66 + 1.314 1.443 0.449
ENSG00000187240 E083 0.0000000       11 103282157 103282178 22 +      
ENSG00000187240 E084 33.1792106 0.0022914873 3.547769e-01 4.990972e-01 11 103282179 103282229 51 + 1.359 1.471 0.385
ENSG00000187240 E085 18.1210124 0.0014932796 5.751872e-01 7.008648e-01 11 103283008 103283016 9 + 1.133 1.100 -0.119
ENSG00000187240 E086 30.3085838 0.0006260878 8.451072e-03 2.491333e-02 11 103283017 103283085 69 + 1.299 1.543 0.843
ENSG00000187240 E087 41.6419995 0.0005123560 1.837233e-04 8.937635e-04 11 103286255 103286386 132 + 1.420 1.707 0.981
ENSG00000187240 E088 33.1525375 0.0007304405 2.288185e-03 8.114148e-03 11 103287533 103287605 73 + 1.329 1.595 0.917
ENSG00000187240 E089 0.2965864 0.2842568862 1.528053e-02   11 103287606 103287744 139 + 0.000 0.437 14.426
ENSG00000187240 E090 51.3951865 0.0005829393 2.160991e-03 7.723525e-03 11 103303093 103303253 161 + 1.523 1.750 0.775
ENSG00000187240 E091 51.2106342 0.0004846576 1.302178e-04 6.598029e-04 11 103304595 103304720 126 + 1.513 1.783 0.919
ENSG00000187240 E092 43.3451554 0.0005073018 3.817787e-02 8.769227e-02 11 103307721 103307831 111 + 1.463 1.641 0.610
ENSG00000187240 E093 54.7693087 0.0004062755 4.355528e-05 2.489566e-04 11 103311878 103312033 156 + 1.536 1.814 0.944
ENSG00000187240 E094 36.9094562 0.0011692511 7.851976e-04 3.206513e-03 11 103316545 103316620 76 + 1.372 1.650 0.953
ENSG00000187240 E095 55.0879935 0.0004675292 4.025059e-05 2.318441e-04 11 103321029 103321237 209 + 1.542 1.820 0.943
ENSG00000187240 E096 0.0000000       11 103321238 103321241 4 +      
ENSG00000187240 E097 43.4812283 0.0029522341 3.741405e-05 2.172095e-04 11 103323886 103323990 105 + 1.432 1.750 1.088
ENSG00000187240 E098 44.2190784 0.0094586578 2.711761e-07 2.531088e-06 11 103358243 103358359 117 + 1.408 1.833 1.446
ENSG00000187240 E099 71.3203598 0.0013404537 5.005322e-15 1.722513e-13 11 103399663 103399872 210 + 1.607 2.041 1.465
ENSG00000187240 E100 49.4137686 0.0005594593 1.720936e-17 8.183387e-16 11 103435943 103436032 90 + 1.422 1.942 1.767
ENSG00000187240 E101 0.2934659 0.0295583765 1.628062e-01   11 103454999 103455185 187 + 0.049 0.276 2.906
ENSG00000187240 E102 64.9615629 0.0004467653 4.060870e-23 3.647794e-21 11 103455186 103455295 110 + 1.538 2.065 1.780
ENSG00000187240 E103 56.2991473 0.0144832022 1.050720e-10 1.847557e-09 11 103456275 103456356 82 + 1.478 2.011 1.804
ENSG00000187240 E104 0.6759915 0.5450517153 4.591683e-01 5.993968e-01 11 103468389 103468588 200 + 0.133 0.284 1.360
ENSG00000187240 E105 65.5831995 0.0042530786 6.786498e-22 5.334779e-20 11 103468589 103468705 117 + 1.529 2.101 1.935
ENSG00000187240 E106 94.8481990 0.0330060284 1.223519e-11 2.511834e-10 11 103479095 103479863 769 + 1.638 2.325 2.310