• ENSG00000178538
  • 1 Isoform Switch
  • 2 Differential Exon Usage

ENSG00000178538

1 Isoform Switch

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

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TableFilter v0.7.3

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isoform_idColumn filter
gene_idColumn filter
condition_1Column filter
condition_2Column filter
gene_nameColumn filter
gene_biotypeColumn filter
iso_biotypeColumn filter
gene_overall_meanColumn filter
gene_value_1Column filter
gene_value_2Column filter
gene_stderr_1Column filter
gene_stderr_2Column filter
gene_log2_fold_changeColumn filter
iso_overall_meanColumn filter
iso_value_1Column filter
iso_value_2Column filter
iso_stderr_1Column filter
iso_stderr_2Column filter
iso_log2_fold_changeColumn filter
IF_overallColumn filter
IF1Column filter
IF2Column filter
dIFColumn filter
isoform_switch_q_valueColumn filter
gene_switch_q_valueColumn filter
PTCColumn filter
codingPotentialColumn filter
ENST00000317995 ENSG00000178538 HEK293_OSMI2_2hA HEK293_TMG_2hB CA8 protein_coding protein_coding 16.7279 17.70832 18.41022 2.385263 0.3673641 0.0560488 1.544726 0.935946 2.713470 0.1770201 0.1890515 1.5256161 0.0881125 0.0531000 0.1473667 0.09426667 4.731987e-06 4.731987e-06 FALSE TRUE
ENST00000524872 ENSG00000178538 HEK293_OSMI2_2hA HEK293_TMG_2hB CA8 protein_coding retained_intron 16.7279 17.70832 18.41022 2.385263 0.3673641 0.0560488 9.828201 11.645075 9.496881 1.3708264 0.4000103 -0.2939143 0.5864458 0.6608667 0.5160667 -0.14480000 1.616160e-03 4.731987e-06 FALSE TRUE
MSTRG.31541.2 ENSG00000178538 HEK293_OSMI2_2hA HEK293_TMG_2hB CA8 protein_coding   16.7279 17.70832 18.41022 2.385263 0.3673641 0.0560488 5.132563 5.037535 5.789329 0.8492825 0.3334183 0.2003070 0.3101500 0.2814333 0.3140000 0.03256667 6.009879e-01 4.731987e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

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TableFilter v0.7.3

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groupIDColumn filter
featureIDColumn filter
exonBaseMeanColumn filter
dispersionColumn filter
pvalueColumn filter
padjColumn filter
seqnamesColumn filter
startColumn filter
endColumn filter
widthColumn filter
strandColumn filter
HEK293_TMG_2hBColumn filter
HEK293_OSMI2_2hAColumn filter
log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hBColumn filter
ENSG00000178538 E001 174.5583233 0.0123663040 7.746592e-14 2.239537e-12 8 60185412 60189482 4071 - 2.454 1.988 -1.557
ENSG00000178538 E002 121.9584523 0.0003305719 1.515256e-03 5.685496e-03 8 60189483 60189985 503 - 2.165 2.029 -0.458
ENSG00000178538 E003 129.6733180 0.0006822168 2.716853e-08 3.084620e-07 8 60208071 60208749 679 - 2.025 2.168 0.478
ENSG00000178538 E004 180.7141334 0.0002514390 1.212522e-07 1.212311e-06 8 60208750 60208919 170 - 2.196 2.296 0.333
ENSG00000178538 E005 153.2951082 0.0002435083 2.148517e-06 1.659519e-05 8 60222649 60222761 113 - 2.130 2.226 0.321
ENSG00000178538 E006 123.5015944 0.0002711148 4.503647e-03 1.455306e-02 8 60224537 60224585 49 - 2.064 2.115 0.172
ENSG00000178538 E007 140.7869997 0.0013974650 3.298055e-02 7.776644e-02 8 60226873 60226935 63 - 2.130 2.159 0.097
ENSG00000178538 E008 160.1435086 0.0002906810 4.832414e-03 1.546508e-02 8 60232284 60232379 96 - 2.182 2.221 0.132
ENSG00000178538 E009 1.5584509 0.1571035068 8.543694e-01 9.098933e-01 8 60232485 60232673 189 - 0.386 0.398 0.064
ENSG00000178538 E010 0.5514428 0.0193874923 9.956149e-02 1.898140e-01 8 60264822 60265924 1103 - 0.000 0.276 9.755
ENSG00000178538 E011 225.1106474 0.0001790935 3.959456e-01 5.397386e-01 8 60265925 60266049 125 - 2.365 2.346 -0.062
ENSG00000178538 E012 213.1549825 0.0025237982 6.949167e-01 7.956354e-01 8 60279689 60279880 192 - 2.360 2.307 -0.175
ENSG00000178538 E013 146.3388777 0.0103404072 2.340173e-02 5.858224e-02 8 60281048 60281400 353 - 2.253 2.090 -0.546