ENSG00000177084

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000320574 ENSG00000177084 HEK293_OSMI2_2hA HEK293_TMG_2hB POLE protein_coding protein_coding 58.91814 73.86753 47.54074 4.513118 1.558856 -0.6356679 21.778118 17.240443 29.480874 2.7798623 2.0909817 0.7736351 0.39426667 0.23533333 0.61916667 0.38383333 7.090128e-07 8.576946e-140 FALSE TRUE
ENST00000434528 ENSG00000177084 HEK293_OSMI2_2hA HEK293_TMG_2hB POLE protein_coding nonsense_mediated_decay 58.91814 73.86753 47.54074 4.513118 1.558856 -0.6356679 6.962032 15.440480 2.542494 4.1547859 0.4196877 -2.5976722 0.10748333 0.21293333 0.05380000 -0.15913333 2.626360e-02 8.576946e-140 FALSE TRUE
ENST00000545015 ENSG00000177084 HEK293_OSMI2_2hA HEK293_TMG_2hB POLE protein_coding retained_intron 58.91814 73.86753 47.54074 4.513118 1.558856 -0.6356679 3.419764 1.612523 4.317535 0.3830954 0.8781734 1.4153061 0.06387917 0.02210000 0.08996667 0.06786667 1.739207e-03 8.576946e-140 FALSE TRUE
ENST00000672002 ENSG00000177084 HEK293_OSMI2_2hA HEK293_TMG_2hB POLE protein_coding nonsense_mediated_decay 58.91814 73.86753 47.54074 4.513118 1.558856 -0.6356679 10.209034 23.444796 0.000000 1.3428052 0.0000000 -11.1956672 0.14115833 0.31756667 0.00000000 -0.31756667 8.576946e-140 8.576946e-140 FALSE TRUE
MSTRG.8357.2 ENSG00000177084 HEK293_OSMI2_2hA HEK293_TMG_2hB POLE protein_coding   58.91814 73.86753 47.54074 4.513118 1.558856 -0.6356679 6.745121 7.388924 2.743707 3.5893670 1.4516841 -1.4259403 0.12852500 0.09466667 0.05913333 -0.03553333 8.820085e-01 8.576946e-140 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000177084 E001 5.6012011 0.0059618177 2.946928e-02 7.090974e-02 12 132623753 132623761 9 - 0.577 0.899 1.318
ENSG00000177084 E002 12.8923026 0.0018278229 1.846292e-06 1.447263e-05 12 132623762 132623767 6 - 0.696 1.251 2.082
ENSG00000177084 E003 18.3567213 0.0303375275 2.632072e-06 1.995271e-05 12 132623768 132623775 8 - 0.761 1.408 2.368
ENSG00000177084 E004 1168.1250721 0.0082460480 4.555560e-14 1.358472e-12 12 132623776 132624262 487 - 2.786 3.147 1.200
ENSG00000177084 E005 969.1577106 0.0061342609 4.266671e-15 1.482046e-13 12 132624263 132624554 292 - 2.728 3.060 1.105
ENSG00000177084 E006 669.3409103 0.0051191879 8.184994e-12 1.727923e-10 12 132624555 132624689 135 - 2.609 2.888 0.929
ENSG00000177084 E007 344.0371677 0.0038744038 3.090491e-11 5.941591e-10 12 132624690 132624705 16 - 2.330 2.596 0.885
ENSG00000177084 E008 536.2544507 0.0058695362 2.928415e-09 3.982052e-08 12 132624706 132624810 105 - 2.524 2.788 0.878
ENSG00000177084 E009 2.8302681 0.0228533282 1.882988e-01 3.115977e-01 12 132624811 132624904 94 - 0.413 0.649 1.122
ENSG00000177084 E010 459.4754452 0.0048280246 7.121314e-12 1.518757e-10 12 132624905 132624994 90 - 2.439 2.726 0.953
ENSG00000177084 E011 12.8746709 0.0414062989 8.173692e-01 8.845281e-01 12 132624995 132625297 303 - 1.097 1.144 0.170
ENSG00000177084 E012 9.3478018 0.0573546056 5.031808e-01 6.391504e-01 12 132625298 132625419 122 - 1.054 0.973 -0.299
ENSG00000177084 E013 9.9879648 0.0018342527 4.563474e-01 5.967921e-01 12 132625420 132625644 225 - 1.069 1.003 -0.242
ENSG00000177084 E014 462.5895390 0.0015222551 4.084097e-14 1.226958e-12 12 132625645 132625770 126 - 2.496 2.710 0.712
ENSG00000177084 E015 4.6478444 0.0035261285 7.211731e-01 8.156293e-01 12 132625771 132625951 181 - 0.761 0.722 -0.159
ENSG00000177084 E016 559.1747938 0.0008554168 1.314354e-17 6.358539e-16 12 132626117 132626266 150 - 2.588 2.788 0.664
ENSG00000177084 E017 344.7498362 0.0005271434 5.236409e-15 1.795515e-13 12 132626267 132626310 44 - 2.379 2.576 0.658
ENSG00000177084 E018 238.4385971 0.0004757612 6.295709e-08 6.650514e-07 12 132626311 132626317 7 - 2.248 2.405 0.526
ENSG00000177084 E019 491.5173766 0.0023129181 2.061044e-08 2.396775e-07 12 132632315 132632437 123 - 2.546 2.728 0.605
ENSG00000177084 E020 228.9233014 0.0081286830 4.801987e-03 1.537914e-02 12 132632438 132632447 10 - 2.228 2.394 0.553
ENSG00000177084 E021 317.4044479 0.0030318021 4.282060e-09 5.644079e-08 12 132632448 132632488 41 - 2.326 2.549 0.743
ENSG00000177084 E022 249.7407322 0.0010063807 1.199544e-13 3.371163e-12 12 132632489 132632507 19 - 2.214 2.445 0.769
ENSG00000177084 E023 193.4659937 0.0002250784 6.248796e-14 1.827722e-12 12 132632508 132632508 1 - 2.105 2.332 0.761
ENSG00000177084 E024 10.4505936 0.0290160362 1.735422e-03 6.394199e-03 12 132632509 132632663 155 - 1.247 0.856 -1.432
ENSG00000177084 E025 541.1222977 0.0004589679 8.048745e-18 4.001091e-16 12 132632664 132632795 132 - 2.586 2.767 0.603
ENSG00000177084 E026 3.3611146 0.1655928338 9.386011e-01 9.654452e-01 12 132632796 132633970 1175 - 0.622 0.641 0.084
ENSG00000177084 E027 0.8083901 0.0159073626 9.807479e-01 9.919477e-01 12 132633971 132634185 215 - 0.254 0.255 0.010
ENSG00000177084 E028 718.7975612 0.0007320112 3.511514e-12 7.879259e-11 12 132634186 132634378 193 - 2.734 2.883 0.496
ENSG00000177084 E029 525.7478229 0.0010060818 7.570362e-03 2.269527e-02 12 132635892 132636024 133 - 2.651 2.726 0.249
ENSG00000177084 E030 1.2878122 0.0108017461 1.475668e-01 2.583837e-01 12 132636025 132636025 1 - 0.145 0.415 2.013
ENSG00000177084 E031 461.9972824 0.0008289091 7.560171e-03 2.267142e-02 12 132638014 132638139 126 - 2.595 2.669 0.245
ENSG00000177084 E032 4.8535178 0.0102714668 2.370224e-02 5.920075e-02 12 132638140 132639124 985 - 0.475 0.838 1.568
ENSG00000177084 E033 446.7659382 0.0005780574 2.943317e-03 1.009747e-02 12 132639125 132639298 174 - 2.577 2.654 0.256
ENSG00000177084 E034 37.4432689 0.0104787405 7.711851e-02 1.548689e-01 12 132641018 132641383 366 - 1.639 1.519 -0.408
ENSG00000177084 E035 22.0792690 0.0010679459 3.233313e-02 7.649884e-02 12 132641384 132641646 263 - 1.428 1.282 -0.508
ENSG00000177084 E036 534.3701482 0.0002247095 3.023802e-02 7.243750e-02 12 132641647 132641851 205 - 2.674 2.725 0.169
ENSG00000177084 E037 595.1110942 0.0001284769 5.033764e-03 1.602363e-02 12 132642177 132642397 221 - 2.773 2.742 -0.102
ENSG00000177084 E038 561.1932602 0.0006354957 1.863918e-01 3.092226e-01 12 132642506 132642729 224 - 2.734 2.723 -0.035
ENSG00000177084 E039 410.8303384 0.0029754933 5.457267e-01 6.760186e-01 12 132642820 132642996 177 - 2.592 2.593 0.005
ENSG00000177084 E040 286.7124127 0.0038976953 8.547240e-01 9.101404e-01 12 132643224 132643330 107 - 2.428 2.442 0.046
ENSG00000177084 E041 356.3293953 0.0024021444 1.188278e-01 2.182728e-01 12 132643407 132643560 154 - 2.551 2.520 -0.100
ENSG00000177084 E042 396.6349221 0.0024189353 2.231616e-03 7.941338e-03 12 132643837 132643977 141 - 2.625 2.551 -0.248
ENSG00000177084 E043 3.0518162 0.0053831313 6.751265e-01 7.804867e-01 12 132648546 132648928 383 - 0.621 0.565 -0.251
ENSG00000177084 E044 335.3624762 0.0027053084 1.519557e-02 4.093095e-02 12 132648929 132649072 144 - 2.543 2.482 -0.202
ENSG00000177084 E045 148.5592671 0.0010977999 2.047272e-01 3.320516e-01 12 132649306 132649320 15 - 2.170 2.141 -0.097
ENSG00000177084 E046 163.7839621 0.0021886657 3.353796e-01 4.791640e-01 12 132649321 132649352 32 - 2.207 2.187 -0.067
ENSG00000177084 E047 290.4812293 0.0059859837 9.262238e-01 9.575565e-01 12 132649353 132649515 163 - 2.432 2.452 0.065
ENSG00000177084 E048 336.6563773 0.0010733180 1.351931e-01 2.413693e-01 12 132649677 132649889 213 - 2.522 2.499 -0.078
ENSG00000177084 E049 1.5563746 0.0145087168 7.676589e-01 8.498456e-01 12 132650283 132651407 1125 - 0.413 0.368 -0.250
ENSG00000177084 E050 286.1276991 0.0025654929 2.849449e-02 6.900241e-02 12 132657136 132657258 123 - 2.472 2.416 -0.187
ENSG00000177084 E051 243.8427727 0.0014522012 2.460880e-03 8.646740e-03 12 132657349 132657429 81 - 2.413 2.339 -0.248
ENSG00000177084 E052 280.2841647 0.0002033966 7.685163e-07 6.544098e-06 12 132657868 132657970 103 - 2.486 2.388 -0.324
ENSG00000177084 E053 0.1482932 0.0422874528 7.143330e-01   12 132657971 132658674 704 - 0.000 0.102 10.060
ENSG00000177084 E054 0.0000000       12 132658692 132658743 52 -      
ENSG00000177084 E055 383.0318338 0.0002237119 7.653543e-14 2.214326e-12 12 132659295 132659505 211 - 2.641 2.509 -0.440
ENSG00000177084 E056 109.8661409 0.0036106690 5.435656e-07 4.774079e-06 12 132659506 132659509 4 - 2.145 1.936 -0.700
ENSG00000177084 E057 4.8318061 0.0038265489 2.268280e-04 1.078287e-03 12 132659510 132660913 1404 - 0.988 0.496 -2.032
ENSG00000177084 E058 364.5798373 0.0016687609 1.888416e-08 2.212323e-07 12 132660969 132661164 196 - 2.624 2.488 -0.455
ENSG00000177084 E059 371.6407683 0.0015437819 2.932848e-10 4.780344e-09 12 132661527 132661680 154 - 2.640 2.490 -0.502
ENSG00000177084 E060 160.1034906 0.0010323453 8.542002e-07 7.200252e-06 12 132661681 132661684 4 - 2.271 2.128 -0.480
ENSG00000177084 E061 313.1405190 0.0028236133 1.277283e-07 1.271291e-06 12 132664004 132664148 145 - 2.570 2.414 -0.518
ENSG00000177084 E062 203.1614804 0.0041491418 4.759849e-06 3.405617e-05 12 132664370 132664462 93 - 2.388 2.222 -0.555
ENSG00000177084 E063 245.7969485 0.0022954539 2.722198e-09 3.727860e-08 12 132665302 132665450 149 - 2.475 2.298 -0.590
ENSG00000177084 E064 289.4192467 0.0046864980 5.080168e-09 6.620503e-08 12 132667503 132667648 146 - 2.564 2.354 -0.698
ENSG00000177084 E065 306.2604647 0.0073068782 1.598405e-06 1.270029e-05 12 132668356 132668502 147 - 2.584 2.385 -0.665
ENSG00000177084 E066 240.1540566 0.0160172053 1.161492e-02 3.261801e-02 12 132668635 132668737 103 - 2.447 2.308 -0.463
ENSG00000177084 E067 248.2851531 0.0091299476 3.187913e-03 1.081943e-02 12 132668811 132668939 129 - 2.455 2.325 -0.433
ENSG00000177084 E068 2.9317138 0.1124557747 3.470091e-02 8.107221e-02 12 132669339 132669456 118 - 0.788 0.374 -1.914
ENSG00000177084 E069 177.3836145 0.0031578039 2.514123e-06 1.914053e-05 12 132672215 132672280 66 - 2.325 2.162 -0.546
ENSG00000177084 E070 138.0363504 0.0031341504 1.847433e-06 1.448097e-05 12 132672281 132672322 42 - 2.225 2.047 -0.596
ENSG00000177084 E071 12.3605848 0.0715481189 7.321563e-02 1.486654e-01 12 132672544 132672579 36 - 1.274 0.980 -1.060
ENSG00000177084 E072 16.5483536 0.0021015190 7.777111e-06 5.297916e-05 12 132672580 132672626 47 - 1.422 1.057 -1.288
ENSG00000177084 E073 270.3991243 0.0069231328 1.988363e-08 2.319394e-07 12 132672627 132672839 213 - 2.551 2.313 -0.793
ENSG00000177084 E074 188.4267693 0.0101615986 1.151840e-06 9.441100e-06 12 132673164 132673277 114 - 2.401 2.152 -0.833
ENSG00000177084 E075 186.2428395 0.0061321955 4.330723e-07 3.878427e-06 12 132673575 132673707 133 - 2.377 2.162 -0.717
ENSG00000177084 E076 178.1331315 0.0084185798 7.120057e-08 7.437137e-07 12 132675398 132675517 120 - 2.379 2.121 -0.865
ENSG00000177084 E077 0.9211837 0.0132392715 1.848662e-01 3.073117e-01 12 132675518 132675734 217 - 0.413 0.186 -1.575
ENSG00000177084 E078 166.2889450 0.0062809898 2.001536e-10 3.353839e-09 12 132675735 132675820 86 - 2.361 2.078 -0.945
ENSG00000177084 E079 0.4460135 0.0262064095 3.693819e-02 8.534459e-02 12 132675821 132676085 265 - 0.341 0.000 -13.071
ENSG00000177084 E080 0.0000000       12 132676086 132676093 8 -      
ENSG00000177084 E081 169.7381156 0.0076845376 5.350417e-13 1.370313e-11 12 132676094 132676184 91 - 2.401 2.053 -1.161
ENSG00000177084 E082 108.0253519 0.0026143376 2.058152e-14 6.469399e-13 12 132676185 132676204 20 - 2.186 1.880 -1.027
ENSG00000177084 E083 0.2924217 0.0290785164 1.087558e-01   12 132676205 132676498 294 - 0.254 0.000 -12.486
ENSG00000177084 E084 199.2057138 0.0063452444 1.522023e-13 4.214921e-12 12 132676546 132676653 108 - 2.459 2.136 -1.081
ENSG00000177084 E085 180.8061721 0.0079271283 3.446285e-12 7.748498e-11 12 132677363 132677443 81 - 2.424 2.087 -1.125
ENSG00000177084 E086 228.7035470 0.0116689871 4.491311e-10 7.098235e-09 12 132677578 132677719 142 - 2.527 2.188 -1.130
ENSG00000177084 E087 0.2965864 0.3148461661 4.312959e-01   12 132678452 132678569 118 - 0.000 0.181 11.020
ENSG00000177084 E088 219.8417660 0.0093937349 7.048710e-11 1.275900e-09 12 132679497 132679651 155 - 2.504 2.179 -1.085
ENSG00000177084 E089 174.9199680 0.0091581655 9.087894e-11 1.615231e-09 12 132679954 132680046 93 - 2.407 2.077 -1.103
ENSG00000177084 E090 138.3778473 0.0039805304 7.905190e-14 2.282405e-12 12 132680178 132680222 45 - 2.294 1.988 -1.023
ENSG00000177084 E091 3.6652543 0.0044972116 1.440033e-02 3.913497e-02 12 132680531 132680606 76 - 0.842 0.496 -1.481
ENSG00000177084 E092 173.1154193 0.0019010372 5.224662e-20 3.318125e-18 12 132680607 132680687 81 - 2.387 2.089 -0.995
ENSG00000177084 E093 2.0347827 0.0799677657 1.672639e-02 4.433575e-02 12 132681028 132681137 110 - 0.697 0.256 -2.309
ENSG00000177084 E094 179.4969587 0.0037770146 1.763515e-14 5.604641e-13 12 132681138 132681279 142 - 2.398 2.108 -0.967
ENSG00000177084 E095 90.4647242 0.0072601978 4.671994e-11 8.718432e-10 12 132687254 132687335 82 - 2.129 1.780 -1.175
ENSG00000177084 E096 24.2951616 0.0009846722 1.422638e-07 1.403576e-06 12 132687336 132687410 75 - 1.579 1.224 -1.230
ENSG00000177084 E097 0.4417471 0.6081528754 1.740547e-01 2.934479e-01 12 132687746 132687793 48 - 0.340 0.000 -13.067