ENSG00000177030

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000382409 ENSG00000177030 HEK293_OSMI2_2hA HEK293_TMG_2hB DEAF1 protein_coding protein_coding 132.4206 242.3937 76.34685 10.86316 2.629834 -1.666582 23.30507 34.4532 19.85471 6.172383 1.6182223 -0.7948494 0.1743333 0.1406667 0.2593000 0.1186333 9.736517e-03 4.482988e-15 FALSE TRUE
ENST00000682936 ENSG00000177030 HEK293_OSMI2_2hA HEK293_TMG_2hB DEAF1 protein_coding retained_intron 132.4206 242.3937 76.34685 10.86316 2.629834 -1.666582 79.42212 159.8076 36.10085 5.204575 0.8048893 -2.1459222 0.5893750 0.6604667 0.4736333 -0.1868333 1.581031e-06 4.482988e-15 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000177030 E001 0.0000000       11 644184 644185 2 -      
ENSG00000177030 E002 2.5462655 6.610764e-03 3.960059e-01 5.397974e-01 11 644186 644232 47 - 0.350 0.508 0.840
ENSG00000177030 E003 9.3641158 2.307345e-02 5.405561e-01 6.716914e-01 11 644233 644233 1 - 0.857 0.943 0.326
ENSG00000177030 E004 11.0678411 9.049317e-03 4.841242e-01 6.221442e-01 11 644234 644234 1 - 1.062 0.970 -0.337
ENSG00000177030 E005 59.8533519 5.391975e-03 9.435060e-01 9.685535e-01 11 644235 644238 4 - 1.682 1.679 -0.010
ENSG00000177030 E006 76.8090640 2.702566e-03 8.000790e-02 1.595719e-01 11 644239 644243 5 - 1.709 1.801 0.310
ENSG00000177030 E007 86.5555115 1.673094e-03 3.193940e-02 7.573943e-02 11 644244 644246 3 - 1.749 1.853 0.350
ENSG00000177030 E008 220.3659476 6.015079e-03 8.899117e-04 3.578669e-03 11 644247 644272 26 - 2.103 2.263 0.534
ENSG00000177030 E009 242.2084698 5.320735e-03 5.914335e-04 2.502184e-03 11 644273 644294 22 - 2.148 2.303 0.520
ENSG00000177030 E010 271.6937869 4.820346e-03 1.616379e-04 7.990456e-04 11 644295 644305 11 - 2.191 2.354 0.543
ENSG00000177030 E011 286.6836280 4.215889e-03 1.503602e-04 7.485887e-04 11 644306 644306 1 - 2.221 2.376 0.515
ENSG00000177030 E012 2008.6378076 1.086012e-03 5.157101e-13 1.324922e-11 11 644307 644654 348 - 3.090 3.214 0.411
ENSG00000177030 E013 13.6676713 7.138347e-03 4.595236e-01 5.996416e-01 11 646285 646326 42 - 0.986 1.066 0.295
ENSG00000177030 E014 103.9673782 7.050429e-03 3.473316e-02 8.113755e-02 11 646327 646555 229 - 1.803 1.929 0.423
ENSG00000177030 E015 2.3875641 9.829124e-03 5.499938e-01 6.796738e-01 11 646556 646596 41 - 0.350 0.460 0.604
ENSG00000177030 E016 3.0601455 5.103889e-03 9.830751e-01 9.934717e-01 11 648412 648602 191 - 0.542 0.530 -0.052
ENSG00000177030 E017 1.5415372 1.237323e-02 9.885611e-01 9.969033e-01 11 649901 649942 42 - 0.350 0.342 -0.052
ENSG00000177030 E018 2.9462946 5.284600e-03 6.583378e-01 7.675173e-01 11 649943 650019 77 - 0.456 0.530 0.363
ENSG00000177030 E019 56.4980974 5.650477e-03 2.259274e-01 3.575055e-01 11 651162 651407 246 - 1.589 1.666 0.263
ENSG00000177030 E020 32.1793725 6.378739e-04 1.400220e-06 1.126067e-05 11 651651 651741 91 - 1.659 1.329 -1.134
ENSG00000177030 E021 19.1547661 1.069945e-03 2.618127e-01 3.995233e-01 11 651742 651777 36 - 1.292 1.181 -0.391
ENSG00000177030 E022 45.3282333 2.625783e-03 5.668714e-07 4.963813e-06 11 651778 651946 169 - 1.795 1.482 -1.063
ENSG00000177030 E023 6.6225207 1.561518e-02 4.784627e-02 1.053502e-01 11 653941 653961 21 - 1.013 0.734 -1.074
ENSG00000177030 E024 1339.8849868 1.449632e-04 9.466269e-12 1.980734e-10 11 653962 654051 90 - 2.948 3.030 0.271
ENSG00000177030 E025 49.8221001 4.847049e-04 9.762554e-01 9.891572e-01 11 659435 659796 362 - 1.603 1.594 -0.028
ENSG00000177030 E026 13.9875553 1.474193e-02 4.594356e-01 5.995905e-01 11 674372 674535 164 - 1.013 1.098 0.310
ENSG00000177030 E027 2131.3090794 1.362354e-04 7.242674e-11 1.308135e-09 11 674536 674783 248 - 3.167 3.227 0.201
ENSG00000177030 E028 1287.8570272 2.843775e-04 4.723728e-02 1.042541e-01 11 678694 678822 129 - 2.983 3.002 0.064
ENSG00000177030 E029 1389.1584907 6.214532e-04 4.969004e-01 6.334698e-01 11 679688 679816 129 - 3.047 3.028 -0.063
ENSG00000177030 E030 37.5163247 5.727591e-04 8.468477e-01 9.048303e-01 11 679882 679977 96 - 1.497 1.473 -0.081
ENSG00000177030 E031 42.2205003 1.529482e-02 9.986056e-01 1.000000e+00 11 679978 680074 97 - 1.529 1.523 -0.022
ENSG00000177030 E032 1448.8096323 4.072770e-04 3.234061e-01 4.667386e-01 11 680963 681089 127 - 3.068 3.045 -0.075
ENSG00000177030 E033 12.1800408 1.653833e-03 2.580471e-01 3.952480e-01 11 683576 684897 1322 - 1.127 0.995 -0.481
ENSG00000177030 E034 1076.4511872 1.071727e-04 7.630431e-01 8.465188e-01 11 684898 684963 66 - 2.925 2.920 -0.019
ENSG00000177030 E035 1081.7796346 9.357892e-05 1.528419e-02 4.113281e-02 11 686858 686920 63 - 2.903 2.927 0.079
ENSG00000177030 E036 1235.9772836 9.561229e-05 1.930691e-01 3.176217e-01 11 686921 686997 77 - 3.001 2.974 -0.088
ENSG00000177030 E037 692.5117559 1.067410e-04 2.338628e-02 5.855131e-02 11 687911 687911 1 - 2.767 2.719 -0.160
ENSG00000177030 E038 1375.0953828 5.043980e-04 1.199998e-05 7.828378e-05 11 687912 688049 138 - 3.087 3.013 -0.249
ENSG00000177030 E039 580.5085370 2.030351e-04 7.179508e-09 9.084533e-08 11 688050 688057 8 - 2.744 2.628 -0.386
ENSG00000177030 E040 4.3867404 5.442042e-03 5.169650e-01 6.514582e-01 11 688058 688208 151 - 0.541 0.646 0.466
ENSG00000177030 E041 1172.0652507 1.421843e-03 1.296425e-07 1.288718e-06 11 688331 688460 130 - 3.053 2.934 -0.394
ENSG00000177030 E042 19.9668291 4.495002e-03 2.035967e-01 3.307107e-01 11 689663 689813 151 - 1.319 1.191 -0.449
ENSG00000177030 E043 694.1824147 3.790621e-03 4.249512e-07 3.812366e-06 11 691501 691598 98 - 2.866 2.694 -0.572
ENSG00000177030 E044 0.9514719 3.908815e-02 9.280431e-01 9.586893e-01 11 691599 691647 49 - 0.209 0.227 0.151
ENSG00000177030 E045 0.6255398 1.912445e-02 8.852837e-01 9.306467e-01 11 692250 692543 294 - 0.209 0.179 -0.277
ENSG00000177030 E046 1.2114379 1.066511e-02 1.258533e-01 2.283614e-01 11 692544 693028 485 - 0.000 0.341 12.005
ENSG00000177030 E047 8.7993108 1.989620e-03 1.912015e-02 4.960091e-02 11 693489 693663 175 - 1.106 0.822 -1.062
ENSG00000177030 E048 28.3151692 7.261756e-04 9.075878e-07 7.604254e-06 11 694679 694758 80 - 1.622 1.270 -1.217
ENSG00000177030 E049 536.8915004 1.332953e-02 3.673559e-07 3.338184e-06 11 694759 695274 516 - 2.843 2.549 -0.980
ENSG00000177030 E050 0.5503986 2.044182e-02 6.380118e-01 7.517654e-01 11 697486 697999 514 - 0.209 0.128 -0.856
ENSG00000177030 E051 0.2924217 2.907852e-02 2.596650e-02   11 706572 707118 547 - 0.350 0.000 -12.641