ENSG00000176225

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000255674 ENSG00000176225 HEK293_OSMI2_2hA HEK293_TMG_2hB RTTN protein_coding protein_coding 4.713337 2.717797 5.04158 0.2657181 0.3187519 0.8889983 1.4517429 0.5391863 1.6703880 0.16663322 0.1246421 1.6134269 0.28530000 0.20606667 0.33560000 0.12953333 0.3935080 0.011346 FALSE TRUE
ENST00000579986 ENSG00000176225 HEK293_OSMI2_2hA HEK293_TMG_2hB RTTN protein_coding nonsense_mediated_decay 4.713337 2.717797 5.04158 0.2657181 0.3187519 0.8889983 1.3053672 1.3270656 1.1833258 0.27266084 0.1098175 -0.1640822 0.31275833 0.47800000 0.23883333 -0.23916667 0.0113460 0.011346 FALSE TRUE
ENST00000580034 ENSG00000176225 HEK293_OSMI2_2hA HEK293_TMG_2hB RTTN protein_coding retained_intron 4.713337 2.717797 5.04158 0.2657181 0.3187519 0.8889983 0.0363563 0.1895640 0.0000000 0.18956395 0.0000000 -4.3187793 0.01306250 0.08303333 0.00000000 -0.08303333 0.7219331 0.011346 FALSE FALSE
ENST00000581161 ENSG00000176225 HEK293_OSMI2_2hA HEK293_TMG_2hB RTTN protein_coding nonsense_mediated_decay 4.713337 2.717797 5.04158 0.2657181 0.3187519 0.8889983 0.4369603 0.1747377 0.7080242 0.09629421 0.1003908 1.9585542 0.09282083 0.06146667 0.13970000 0.07823333 0.2632682 0.011346 FALSE TRUE
ENST00000583043 ENSG00000176225 HEK293_OSMI2_2hA HEK293_TMG_2hB RTTN protein_coding nonsense_mediated_decay 4.713337 2.717797 5.04158 0.2657181 0.3187519 0.8889983 0.2837747 0.0000000 0.4147066 0.00000000 0.2089868 5.4083947 0.05446250 0.00000000 0.08070000 0.08070000 0.2701123 0.011346 TRUE TRUE
ENST00000677824 ENSG00000176225 HEK293_OSMI2_2hA HEK293_TMG_2hB RTTN protein_coding protein_coding 4.713337 2.717797 5.04158 0.2657181 0.3187519 0.8889983 0.4205798 0.2188891 0.2448331 0.13687401 0.1241458 0.1549039 0.08518333 0.07620000 0.04663333 -0.02956667 0.9227133 0.011346 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000176225 E001 0.1515154 0.0452893601 1.000000e+00   18 70003031 70003070 40 - 0.090 0.000 -10.887
ENSG00000176225 E002 1.4329743 0.0095723985 9.624282e-01 9.803063e-01 18 70003071 70003803 733 - 0.378 0.376 -0.012
ENSG00000176225 E003 0.0000000       18 70003804 70003804 1 -      
ENSG00000176225 E004 0.0000000       18 70003805 70003819 15 -      
ENSG00000176225 E005 0.0000000       18 70003820 70003829 10 -      
ENSG00000176225 E006 0.1515154 0.0452893601 1.000000e+00   18 70003830 70003839 10 - 0.090 0.000 -10.877
ENSG00000176225 E007 3.3117706 0.0134556100 4.114587e-02 9.315425e-02 18 70003840 70003858 19 - 0.488 0.811 1.398
ENSG00000176225 E008 8.6853913 0.0333705573 2.919046e-02 7.036933e-02 18 70003859 70003883 25 - 0.845 1.149 1.125
ENSG00000176225 E009 17.4733589 0.0193270625 7.220482e-03 2.179710e-02 18 70003884 70003968 85 - 1.129 1.426 1.040
ENSG00000176225 E010 42.7195590 0.0255718892 1.227078e-03 4.732523e-03 18 70003969 70004168 200 - 1.479 1.812 1.134
ENSG00000176225 E011 30.1694086 0.0414298348 6.914977e-02 1.419662e-01 18 70004169 70004236 68 - 1.373 1.632 0.888
ENSG00000176225 E012 27.5402073 0.0140076476 7.843893e-04 3.203764e-03 18 70005198 70005267 70 - 1.310 1.618 1.060
ENSG00000176225 E013 1.5510891 0.0093891065 4.960213e-02 1.084537e-01 18 70005268 70006380 1113 - 0.229 0.574 1.988
ENSG00000176225 E014 25.0510924 0.0044212134 2.147116e-06 1.658572e-05 18 70006381 70006474 94 - 1.241 1.604 1.255
ENSG00000176225 E015 14.3937404 0.0013329188 1.673911e-04 8.239813e-04 18 70006475 70006484 10 - 1.020 1.361 1.214
ENSG00000176225 E016 1.1415081 0.0126272516 5.452681e-03 1.716165e-02 18 70006485 70007066 582 - 0.090 0.573 3.570
ENSG00000176225 E017 1.7702450 0.0756144116 2.212331e-01 3.519144e-01 18 70007376 70009032 1657 - 0.334 0.572 1.243
ENSG00000176225 E018 42.0884842 0.0005463644 6.650672e-06 4.603733e-05 18 70017407 70017590 184 - 1.514 1.765 0.855
ENSG00000176225 E019 26.1492121 0.0008130944 2.794298e-04 1.296113e-03 18 70017591 70017643 53 - 1.310 1.565 0.880
ENSG00000176225 E020 18.3527341 0.0219840220 5.849696e-03 1.821781e-02 18 70017644 70017672 29 - 1.137 1.428 1.019
ENSG00000176225 E021 13.8961314 0.0628433786 6.224780e-02 1.304206e-01 18 70017673 70017674 2 - 1.030 1.304 0.978
ENSG00000176225 E022 0.4438354 0.0559146693 2.734771e-01 4.125211e-01 18 70019290 70019501 212 - 0.090 0.281 1.978
ENSG00000176225 E023 0.9191074 0.0130861807 9.662437e-01 9.828082e-01 18 70019502 70019920 419 - 0.284 0.282 -0.013
ENSG00000176225 E024 41.0283801 0.0028830309 8.619251e-06 5.812863e-05 18 70020615 70020817 203 - 1.492 1.764 0.927
ENSG00000176225 E025 0.0000000       18 70020818 70020845 28 -      
ENSG00000176225 E026 0.4428904 0.7323184344 1.944318e-01 3.193201e-01 18 70020846 70021160 315 - 0.000 0.298 13.684
ENSG00000176225 E027 0.0000000       18 70022204 70022248 45 -      
ENSG00000176225 E028 24.0437981 0.0099351348 1.921175e-02 4.979625e-02 18 70024722 70024848 127 - 1.305 1.510 0.711
ENSG00000176225 E029 20.8182840 0.0009270767 2.557822e-01 3.927059e-01 18 70028724 70028801 78 - 1.290 1.387 0.338
ENSG00000176225 E030 25.4549859 0.0007520849 4.119012e-01 5.554535e-01 18 70030012 70030109 98 - 1.386 1.455 0.236
ENSG00000176225 E031 24.8480476 0.0014196661 5.135749e-01 6.483754e-01 18 70030876 70030981 106 - 1.382 1.440 0.201
ENSG00000176225 E032 0.0000000       18 70031302 70031414 113 -      
ENSG00000176225 E033 37.9562368 0.0009905860 6.659256e-01 7.734938e-01 18 70047971 70048188 218 - 1.569 1.606 0.127
ENSG00000176225 E034 24.7365446 0.0170061551 5.393679e-01 6.706416e-01 18 70051411 70051548 138 - 1.418 1.382 -0.126
ENSG00000176225 E035 0.0000000       18 70053295 70053514 220 -      
ENSG00000176225 E036 21.3908381 0.0149461460 3.577908e-01 5.022035e-01 18 70054131 70054284 154 - 1.365 1.278 -0.302
ENSG00000176225 E037 0.0000000       18 70056319 70056387 69 -      
ENSG00000176225 E038 19.2619652 0.0486946251 4.558433e-01 5.963387e-01 18 70057742 70057832 91 - 1.325 1.226 -0.347
ENSG00000176225 E039 32.8343954 0.0101007365 1.349623e-01 2.410434e-01 18 70059850 70060034 185 - 1.555 1.447 -0.372
ENSG00000176225 E040 13.5995357 0.0014323385 2.078094e-02 5.312650e-02 18 70060035 70060042 8 - 1.223 1.007 -0.778
ENSG00000176225 E041 0.0000000       18 70061312 70061400 89 -      
ENSG00000176225 E042 14.2271612 0.0014989351 4.964650e-01 6.331031e-01 18 70065829 70065842 14 - 1.192 1.141 -0.183
ENSG00000176225 E043 20.0840137 0.0061284587 2.185553e-01 3.486825e-01 18 70065843 70065922 80 - 1.348 1.253 -0.330
ENSG00000176225 E044 18.5250086 0.0287294116 3.434427e-01 4.874818e-01 18 70073906 70073994 89 - 1.316 1.216 -0.349
ENSG00000176225 E045 0.0000000       18 70074759 70075351 593 -      
ENSG00000176225 E046 18.7789706 0.0092044001 3.802290e-01 5.245229e-01 18 70075352 70075541 190 - 1.315 1.251 -0.222
ENSG00000176225 E047 0.1472490 0.0448824371 1.000000e+00   18 70078609 70078738 130 - 0.090 0.000 -10.877
ENSG00000176225 E048 13.3397682 0.0017029026 2.832613e-01 4.233467e-01 18 70086613 70086684 72 - 1.185 1.095 -0.324
ENSG00000176225 E049 21.1977800 0.0012868994 8.089660e-01 8.786618e-01 18 70087989 70088147 159 - 1.334 1.326 -0.028
ENSG00000176225 E050 0.0000000       18 70091545 70091680 136 -      
ENSG00000176225 E051 13.8945283 0.0016583704 6.086920e-01 7.283474e-01 18 70092110 70092186 77 - 1.137 1.195 0.207
ENSG00000176225 E052 8.8883677 0.0045666699 8.111193e-01 8.801765e-01 18 70092187 70092220 34 - 0.969 1.007 0.140
ENSG00000176225 E053 15.2555732 0.0031607617 5.756739e-01 7.012176e-01 18 70092676 70092804 129 - 1.211 1.169 -0.148
ENSG00000176225 E054 23.0063302 0.0413202772 1.184682e-01 2.177436e-01 18 70109498 70109717 220 - 1.432 1.242 -0.660
ENSG00000176225 E055 15.2626370 0.0154012144 5.095073e-01 6.448360e-01 18 70114445 70114599 155 - 1.229 1.166 -0.221
ENSG00000176225 E056 12.5523539 0.0028267115 8.796690e-01 9.267740e-01 18 70121556 70121700 145 - 1.130 1.126 -0.014
ENSG00000176225 E057 16.8254557 0.0099463996 4.344816e-01 5.768500e-01 18 70127502 70127741 240 - 1.263 1.195 -0.239
ENSG00000176225 E058 0.1515154 0.0452893601 1.000000e+00   18 70128054 70128098 45 - 0.090 0.000 -10.877
ENSG00000176225 E059 23.8309634 0.0013112951 9.422386e-02 1.817337e-01 18 70128358 70128546 189 - 1.422 1.306 -0.401
ENSG00000176225 E060 0.5181333 0.0210315845 1.000000e+00 1.000000e+00 18 70128547 70131932 3386 - 0.165 0.164 -0.010
ENSG00000176225 E061 15.9044612 0.0161080747 3.054559e-01 4.475633e-01 18 70134473 70134541 69 - 1.252 1.142 -0.388
ENSG00000176225 E062 15.9272648 0.0207992810 2.422710e-01 3.768604e-01 18 70135184 70135280 97 - 1.263 1.127 -0.481
ENSG00000176225 E063 0.0000000       18 70135281 70135290 10 -      
ENSG00000176225 E064 0.0000000       18 70138263 70138955 693 -      
ENSG00000176225 E065 17.5443219 0.0016388169 5.277680e-01 6.607685e-01 18 70139599 70139716 118 - 1.274 1.231 -0.150
ENSG00000176225 E066 0.1472490 0.0448824371 1.000000e+00   18 70139717 70139932 216 - 0.090 0.000 -10.877
ENSG00000176225 E067 12.5862299 0.0014652403 8.745070e-01 9.233073e-01 18 70140100 70140188 89 - 1.115 1.141 0.094
ENSG00000176225 E068 10.8476494 0.0399263603 1.988088e-01 3.247069e-01 18 70142288 70142387 100 - 1.129 0.959 -0.620
ENSG00000176225 E069 16.6174289 0.0162972669 3.138904e-02 7.466237e-02 18 70145612 70145783 172 - 1.309 1.079 -0.818
ENSG00000176225 E070 17.1784021 0.0248327234 2.359176e-03 8.336077e-03 18 70148901 70149037 137 - 1.351 0.989 -1.295
ENSG00000176225 E071 16.2657763 0.0309592222 6.942056e-03 2.107277e-02 18 70149971 70150087 117 - 1.324 0.988 -1.200
ENSG00000176225 E072 1.0695787 0.0116547701 2.410188e-01 3.753692e-01 18 70150088 70150152 65 - 0.378 0.164 -1.597
ENSG00000176225 E073 16.8944220 0.0063100209 1.197271e-02 3.346605e-02 18 70150608 70150733 126 - 1.315 1.080 -0.835
ENSG00000176225 E074 17.7957086 0.0010886116 4.047499e-02 9.189236e-02 18 70166062 70166188 127 - 1.320 1.155 -0.581
ENSG00000176225 E075 0.5244761 0.3435657512 9.488129e-01 9.719232e-01 18 70166434 70166918 485 - 0.166 0.167 0.014
ENSG00000176225 E076 15.2014178 0.0019713075 5.602863e-03 1.756053e-02 18 70166919 70167031 113 - 1.279 1.026 -0.906
ENSG00000176225 E077 14.0211323 0.0016030161 1.321463e-01 2.370913e-01 18 70168855 70168973 119 - 1.211 1.079 -0.472
ENSG00000176225 E078 9.9216327 0.0017947998 6.559885e-02 1.360428e-01 18 70168974 70169067 94 - 1.091 0.896 -0.720
ENSG00000176225 E079 16.1900246 0.0014131638 2.282829e-01 3.603780e-01 18 70176675 70176845 171 - 1.263 1.169 -0.335
ENSG00000176225 E080 20.0962734 0.0112261646 9.139414e-03 2.663131e-02 18 70188108 70188223 116 - 1.394 1.153 -0.846
ENSG00000176225 E081 23.2615061 0.0031490519 1.066616e-04 5.527004e-04 18 70190538 70190719 182 - 1.469 1.155 -1.097
ENSG00000176225 E082 0.8168978 0.0144282452 4.984920e-01 6.349529e-01 18 70193011 70193287 277 - 0.284 0.164 -1.011
ENSG00000176225 E083 18.2874730 0.0035878081 3.289254e-06 2.441385e-05 18 70193288 70193453 166 - 1.390 0.944 -1.595
ENSG00000176225 E084 0.1482932 0.0407034542 2.537905e-01   18 70194146 70194736 591 - 0.000 0.164 12.574
ENSG00000176225 E085 14.6543902 0.0360305387 3.109936e-02 7.409986e-02 18 70196501 70196648 148 - 1.268 0.971 -1.069
ENSG00000176225 E086 12.1586965 0.0015633020 2.544298e-03 8.895627e-03 18 70197624 70197738 115 - 1.205 0.896 -1.128
ENSG00000176225 E087 12.6937963 0.0013488317 9.828801e-04 3.901106e-03 18 70199414 70199504 91 - 1.229 0.896 -1.215
ENSG00000176225 E088 12.3306266 0.0014503765 8.008956e-04 3.262952e-03 18 70201894 70201983 90 - 1.217 0.870 -1.271
ENSG00000176225 E089 15.9951860 0.0011383582 1.483223e-02 4.011194e-02 18 70204086 70204263 178 - 1.290 1.079 -0.750
ENSG00000176225 E090 14.4934238 0.0083854043 7.551456e-02 1.523309e-01 18 70205128 70205315 188 - 1.235 1.063 -0.617
ENSG00000176225 E091 5.5119888 0.0033701037 9.882871e-01 9.967474e-01 18 70205628 70205726 99 - 0.800 0.813 0.048