ENSG00000175224

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000524625 ENSG00000175224 HEK293_OSMI2_2hA HEK293_TMG_2hB ATG13 protein_coding protein_coding 49.59626 67.90276 39.82256 1.681607 1.426216 -0.7697345 24.210834 38.239309 15.5275567 0.6454142 0.2172581 -1.29967404 0.47315417 0.56360000 0.39063333 -0.17296667 1.603225e-09 1.603225e-09 FALSE TRUE
ENST00000529655 ENSG00000175224 HEK293_OSMI2_2hA HEK293_TMG_2hB ATG13 protein_coding protein_coding 49.59626 67.90276 39.82256 1.681607 1.426216 -0.7697345 2.806457 2.831630 4.2848508 1.0203177 0.4355928 0.59588916 0.05874583 0.04146667 0.10856667 0.06710000 6.527274e-02 1.603225e-09 FALSE TRUE
ENST00000531933 ENSG00000175224 HEK293_OSMI2_2hA HEK293_TMG_2hB ATG13 protein_coding protein_coding 49.59626 67.90276 39.82256 1.681607 1.426216 -0.7697345 2.169540 6.173987 0.1961921 3.3079281 0.1961921 -4.90647630 0.03486667 0.09263333 0.00510000 -0.08753333 4.180189e-01 1.603225e-09 FALSE FALSE
MSTRG.5457.1 ENSG00000175224 HEK293_OSMI2_2hA HEK293_TMG_2hB ATG13 protein_coding   49.59626 67.90276 39.82256 1.681607 1.426216 -0.7697345 6.699727 8.801418 5.9637604 1.8796722 0.5910505 -0.56073481 0.13797083 0.12883333 0.15026667 0.02143333 7.769964e-01 1.603225e-09 FALSE TRUE
MSTRG.5457.11 ENSG00000175224 HEK293_OSMI2_2hA HEK293_TMG_2hB ATG13 protein_coding   49.59626 67.90276 39.82256 1.681607 1.426216 -0.7697345 3.489755 4.005609 3.9125624 0.6548834 0.4883205 -0.03382227 0.07407083 0.05860000 0.09766667 0.03906667 9.071566e-02 1.603225e-09 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000175224 E001 22.3204440 0.0031352450 7.256059e-01 8.188367e-01 11 46617360 46617526 167 + 1.290 1.337 0.166
ENSG00000175224 E002 5.0652989 0.0033151287 1.389548e-01 2.466583e-01 11 46617527 46617534 8 + 0.569 0.807 0.999
ENSG00000175224 E003 4.5546411 0.0036910639 1.154865e-01 2.135516e-01 11 46617535 46617535 1 + 0.512 0.773 1.131
ENSG00000175224 E004 4.5546411 0.0036910639 1.154865e-01 2.135516e-01 11 46617536 46617540 5 + 0.512 0.773 1.131
ENSG00000175224 E005 5.3619870 0.0031247511 3.734677e-01 5.179170e-01 11 46617541 46617544 4 + 0.663 0.807 0.584
ENSG00000175224 E006 5.1083637 0.0070323475 7.985881e-01 8.714819e-01 11 46617545 46617548 4 + 0.704 0.757 0.216
ENSG00000175224 E007 5.4113945 0.0101062146 8.083702e-01 8.782714e-01 11 46617549 46617552 4 + 0.775 0.757 -0.072
ENSG00000175224 E008 7.0313587 0.0030485422 1.664986e-01 2.836595e-01 11 46617553 46617554 2 + 0.960 0.807 -0.584
ENSG00000175224 E009 8.1320687 0.0020200844 2.325544e-01 3.654856e-01 11 46617555 46617556 2 + 1.001 0.880 -0.454
ENSG00000175224 E010 8.3535139 0.0020242066 2.781186e-01 4.177501e-01 11 46617557 46617558 2 + 1.001 0.893 -0.403
ENSG00000175224 E011 11.7794367 0.0037933230 9.145073e-02 1.774001e-01 11 46617559 46617562 4 + 1.162 1.008 -0.558
ENSG00000175224 E012 13.9413909 0.0166873328 1.782423e-01 2.989462e-01 11 46617563 46617567 5 + 1.213 1.086 -0.454
ENSG00000175224 E013 15.6990392 0.0192453503 7.904993e-02 1.579906e-01 11 46617568 46617570 3 + 1.289 1.119 -0.603
ENSG00000175224 E014 28.1178830 0.0165771701 1.814506e-05 1.136786e-04 11 46617571 46617576 6 + 1.641 1.276 -1.258
ENSG00000175224 E015 46.6405105 0.0004987070 1.376872e-13 3.837073e-12 11 46617577 46617577 1 + 1.856 1.493 -1.234
ENSG00000175224 E016 57.5099226 0.0003986188 3.714389e-10 5.955817e-09 11 46617578 46617581 4 + 1.900 1.625 -0.931
ENSG00000175224 E017 62.3604696 0.0005866251 3.446615e-09 4.625608e-08 11 46617582 46617584 3 + 1.919 1.666 -0.854
ENSG00000175224 E018 91.0298172 0.0005799451 3.128261e-12 7.085600e-11 11 46617585 46617595 11 + 2.081 1.830 -0.843
ENSG00000175224 E019 109.7609017 0.0014042605 1.780415e-09 2.518814e-08 11 46617596 46617599 4 + 2.139 1.927 -0.710
ENSG00000175224 E020 271.1711129 0.0050262902 6.745819e-05 3.678685e-04 11 46617600 46617790 191 + 2.487 2.349 -0.459
ENSG00000175224 E021 234.1310548 0.0033383767 1.160366e-02 3.259123e-02 11 46617791 46617890 100 + 2.379 2.309 -0.235
ENSG00000175224 E022 53.4992758 0.0039147214 8.592243e-02 1.688580e-01 11 46618260 46618324 65 + 1.752 1.672 -0.271
ENSG00000175224 E023 66.4302711 0.0093259428 2.721902e-01 4.110452e-01 11 46618325 46618375 51 + 1.825 1.774 -0.170
ENSG00000175224 E024 1.2115396 0.0115775945 7.916351e-01 8.667319e-01 11 46621042 46621059 18 + 0.279 0.338 0.383
ENSG00000175224 E025 5.8683784 0.0075695378 4.068653e-01 5.504925e-01 11 46621060 46621157 98 + 0.704 0.838 0.536
ENSG00000175224 E026 6.1772970 0.0383870956 7.575469e-04 3.106452e-03 11 46625301 46625320 20 + 1.105 0.629 -1.850
ENSG00000175224 E027 11.5615108 0.0034698431 4.497639e-04 1.965749e-03 11 46625321 46625417 97 + 1.269 0.942 -1.182
ENSG00000175224 E028 5.0351125 0.0033061589 6.987567e-01 7.986471e-01 11 46629907 46630044 138 + 0.775 0.738 -0.151
ENSG00000175224 E029 154.6032576 0.0059910455 1.591112e-01 2.739239e-01 11 46630045 46630100 56 + 2.183 2.140 -0.145
ENSG00000175224 E030 2.1057410 0.0190157256 9.999499e-01 1.000000e+00 11 46630897 46630991 95 + 0.448 0.460 0.063
ENSG00000175224 E031 3.6033727 0.0052316019 6.493710e-01 7.606638e-01 11 46632323 46632459 137 + 0.663 0.608 -0.238
ENSG00000175224 E032 0.0000000       11 46638499 46638610 112 +      
ENSG00000175224 E033 224.5969738 0.0070503361 1.252105e-01 2.274357e-01 11 46644279 46644336 58 + 2.350 2.300 -0.168
ENSG00000175224 E034 173.9626630 0.0113621646 2.585066e-01 3.957791e-01 11 46644337 46644360 24 + 2.234 2.192 -0.140
ENSG00000175224 E035 305.3073276 0.0054843951 1.149216e-02 3.233271e-02 11 46645339 46645419 81 + 2.503 2.423 -0.267
ENSG00000175224 E036 375.1976284 0.0040710946 3.975093e-02 9.056213e-02 11 46645870 46645989 120 + 2.572 2.522 -0.166
ENSG00000175224 E037 0.0000000       11 46648727 46648867 141 +      
ENSG00000175224 E038 262.9050778 0.0030261430 2.820352e-01 4.219903e-01 11 46649137 46649183 47 + 2.393 2.378 -0.050
ENSG00000175224 E039 383.6519414 0.0023193324 4.923836e-01 6.295724e-01 11 46650177 46650317 141 + 2.546 2.547 0.006
ENSG00000175224 E040 216.3762978 0.0002736198 2.896925e-02 6.994747e-02 11 46656233 46656273 41 + 2.324 2.287 -0.126
ENSG00000175224 E041 5.4688082 0.1530957143 2.349030e-02 5.875506e-02 11 46656274 46656398 125 + 1.036 0.570 -1.862
ENSG00000175224 E042 2.6323105 0.0086291957 2.130270e-03 7.628160e-03 11 46656951 46656952 2 + 0.807 0.337 -2.205
ENSG00000175224 E043 4.7412763 0.0073336683 7.254489e-05 3.923999e-04 11 46656953 46657059 107 + 1.020 0.493 -2.163
ENSG00000175224 E044 3.0603359 0.0052078215 3.328429e-01 4.765172e-01 11 46657060 46657094 35 + 0.663 0.525 -0.617
ENSG00000175224 E045 308.7488348 0.0004840598 7.137213e-01 8.101254e-01 11 46657095 46657191 97 + 2.444 2.455 0.038
ENSG00000175224 E046 1.9510164 0.0075752282 2.680565e-01 4.064714e-01 11 46657192 46657523 332 + 0.279 0.494 1.231
ENSG00000175224 E047 331.2720132 0.0001812619 4.123602e-01 5.559300e-01 11 46657524 46657622 99 + 2.481 2.483 0.007
ENSG00000175224 E048 0.3697384 0.0249890589 4.622024e-01 6.020631e-01 11 46659335 46659391 57 + 0.000 0.167 10.824
ENSG00000175224 E049 224.0935963 0.0005371575 6.439697e-01 7.563946e-01 11 46659392 46659421 30 + 2.308 2.315 0.024
ENSG00000175224 E050 284.7230487 0.0012211578 2.087107e-03 7.493814e-03 11 46659422 46659485 64 + 2.462 2.398 -0.213
ENSG00000175224 E051 0.5964967 0.0237257668 9.267779e-02 1.793145e-01 11 46659486 46660029 544 + 0.372 0.092 -2.527
ENSG00000175224 E052 0.1482932 0.0418432784 1.000000e+00   11 46663997 46663999 3 + 0.000 0.091 9.611
ENSG00000175224 E053 0.6266857 0.0172671820 4.945545e-01 6.314908e-01 11 46664000 46664095 96 + 0.279 0.167 -0.941
ENSG00000175224 E054 0.2966881 0.0270620348 7.087206e-02   11 46664096 46664149 54 + 0.279 0.000 -12.689
ENSG00000175224 E055 1.1781034 0.1190117210 2.655489e-01 4.036252e-01 11 46664849 46664959 111 + 0.447 0.233 -1.340
ENSG00000175224 E056 391.0252727 0.0010159676 1.145682e-02 3.225053e-02 11 46665383 46665508 126 + 2.581 2.541 -0.133
ENSG00000175224 E057 215.1792819 0.0003755971 6.733531e-03 2.053124e-02 11 46665509 46665519 11 + 2.329 2.276 -0.177
ENSG00000175224 E058 410.9376961 0.0006005499 2.531829e-02 6.252612e-02 11 46667773 46667871 99 + 2.594 2.566 -0.093
ENSG00000175224 E059 236.7413939 0.0037403959 9.242695e-01 9.563033e-01 11 46667872 46667887 16 + 2.320 2.345 0.082
ENSG00000175224 E060 368.8987631 0.0026258980 5.479769e-01 6.779022e-01 11 46668499 46668576 78 + 2.501 2.541 0.134
ENSG00000175224 E061 2.2163577 0.0301872005 3.684547e-01 5.128700e-01 11 46668577 46668690 114 + 0.569 0.423 -0.713
ENSG00000175224 E062 1.4307842 0.0389900823 5.426100e-02 1.167007e-01 11 46668691 46668793 103 + 0.569 0.232 -1.938
ENSG00000175224 E063 409.7501837 0.0010006564 9.674844e-01 9.836583e-01 11 46668794 46668910 117 + 2.560 2.580 0.065
ENSG00000175224 E064 462.7641452 0.0001260785 2.705154e-01 4.091776e-01 11 46669404 46669532 129 + 2.598 2.638 0.132
ENSG00000175224 E065 1153.0299546 0.0008283181 3.164830e-07 2.913917e-06 11 46672255 46672794 540 + 2.947 3.054 0.358
ENSG00000175224 E066 752.0702031 0.0011033922 5.095620e-08 5.484008e-07 11 46672795 46673242 448 + 2.740 2.875 0.449
ENSG00000175224 E067 1244.4068399 0.0028479582 2.941571e-12 6.687530e-11 11 46673243 46674324 1082 + 2.905 3.110 0.684
ENSG00000175224 E068 239.4956235 0.0079439351 1.641884e-07 1.599969e-06 11 46674325 46674818 494 + 2.120 2.414 0.983